Wall clock time and date at job start Mon Mar 30 2020 02:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99775 * 2 1 4 4 H 1.48497 * 109.46973 * 240.00033 * 3 2 1 5 5 H 1.48501 * 109.46869 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46987 * 119.99736 * 3 2 1 7 7 C 1.37872 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00196 * 180.02562 * 7 2 1 9 9 C 1.50711 * 119.99994 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47089 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99883 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46970 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46986 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.82434 * 305.70169 * 13 12 11 15 15 C 1.54386 * 109.90472 * 184.76566 * 13 12 11 16 16 C 1.55306 * 102.25271 * 219.08621 * 15 13 12 17 17 C 1.54950 * 100.94218 * 34.13402 * 16 15 13 18 18 O 1.43241 * 109.83035 * 66.58642 * 13 12 11 19 19 H 0.96999 * 120.00746 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.46682 * 59.99704 * 9 7 2 21 21 H 1.08998 * 109.46627 * 299.99971 * 9 7 2 22 22 H 1.00897 * 111.00345 * 56.04162 * 10 9 7 23 23 H 1.09002 * 109.47451 * 60.00171 * 11 10 9 24 24 H 1.09004 * 109.47333 * 299.99415 * 11 10 9 25 25 H 1.09002 * 109.47270 * 60.00161 * 12 11 10 26 26 H 1.09003 * 109.47157 * 299.99649 * 12 11 10 27 27 H 1.09000 * 110.84933 * 337.27932 * 15 13 12 28 28 H 1.09001 * 110.84623 * 100.89979 * 15 13 12 29 29 H 1.09002 * 111.12884 * 276.21730 * 16 15 13 30 30 H 1.08997 * 111.16217 * 152.06820 * 16 15 13 31 31 H 1.08992 * 110.31012 * 204.63970 * 17 16 15 32 32 H 1.08997 * 110.30842 * 82.46698 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5054 -4.9070 0.0012 12 6 2.5304 -6.0430 0.0019 13 6 1.8011 -7.3880 0.0019 14 1 1.0985 -7.4275 0.8344 15 6 2.8221 -8.5396 0.1232 16 6 2.2310 -9.6067 -0.8379 17 6 1.6132 -8.7041 -1.9354 18 8 1.0992 -7.5602 -1.2348 19 1 -0.4851 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8903 22 1 2.8400 -3.5483 0.7835 23 1 0.8815 -4.9817 -0.8895 24 1 0.8796 -4.9814 0.8906 25 1 3.1547 -5.9686 0.8923 26 1 3.1559 -5.9685 -0.8877 27 1 3.8090 -8.2200 -0.2117 28 1 2.8615 -8.9171 1.1450 29 1 1.4646 -10.2015 -0.3410 30 1 3.0145 -10.2438 -1.2483 31 1 0.8061 -9.2287 -2.4466 32 1 2.3784 -8.3984 -2.6489 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038097234.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:59 Heat of formation + Delta-G solvation = -63.610052 kcal Electronic energy + Delta-G solvation = -12514.578938 eV Core-core repulsion = 10281.326630 eV Total energy + Delta-G solvation = -2233.252308 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.46838 -35.55118 -32.84783 -32.16232 -31.15611 -27.73399 -25.53504 -22.70835 -21.71682 -20.98609 -20.48679 -16.97982 -16.29937 -15.99504 -14.84432 -14.66260 -14.21979 -13.64685 -13.51435 -13.04582 -12.65531 -12.05154 -11.81502 -11.76878 -11.34555 -11.21205 -10.96346 -10.87276 -10.68182 -10.42941 -10.35529 -9.79909 -9.40588 -9.10326 -8.42181 -7.19708 -5.97373 -3.99485 3.37193 3.40640 3.44037 3.86129 4.41853 4.47023 4.67986 4.79082 5.09684 5.16296 5.37952 5.44910 5.49529 5.54184 5.59492 5.65936 5.78810 5.87981 6.00184 6.15203 6.17879 6.61291 6.68924 7.13386 7.35441 7.50703 7.84551 8.20258 8.48988 8.70478 9.09863 9.65077 11.13818 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.093525 B = 0.005384 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 299.313132 B = 5199.385460 C = 5314.978992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.193 3.807 10 N -0.692 5.692 11 C 0.063 3.937 12 C -0.125 4.125 13 C 0.081 3.919 14 H 0.077 0.923 15 C -0.151 4.151 16 C -0.157 4.157 17 C 0.049 3.951 18 O -0.373 6.373 19 H 0.262 0.738 20 H 0.028 0.972 21 H -0.015 1.015 22 H 0.325 0.675 23 H 0.069 0.931 24 H 0.014 0.986 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.597 -17.500 0.092 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.322 5.322 11 C -0.067 4.067 12 C -0.163 4.163 13 C 0.023 3.977 14 H 0.095 0.905 15 C -0.189 4.189 16 C -0.195 4.195 17 C -0.028 4.028 18 O -0.293 6.293 19 H 0.071 0.929 20 H 0.046 0.954 21 H 0.003 0.997 22 H 0.141 0.859 23 H 0.088 0.912 24 H 0.032 0.968 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.345 -17.217 -0.672 17.769 hybrid contribution 0.210 0.746 0.989 1.256 sum 4.555 -16.471 0.317 17.092 Atomic orbital electron populations 1.69960 1.06094 1.26839 1.50935 1.24999 0.94876 0.99348 0.95397 0.86534 0.79401 0.82671 0.78613 1.20162 1.21344 1.20292 1.21177 0.93465 0.90338 1.50320 0.92045 1.19544 0.90636 0.87387 0.95765 1.60654 1.21407 1.01572 1.48616 1.21823 0.95176 0.89736 0.99976 1.21961 0.98520 0.93284 1.02496 1.22796 0.93111 0.94638 0.87154 0.90501 1.23191 0.99793 0.95296 1.00587 1.23264 1.00817 0.98229 0.97195 1.23347 0.98352 0.86378 0.94676 1.88500 1.59687 1.47738 1.33359 0.92886 0.95407 0.99700 0.85892 0.91205 0.96791 0.91560 0.90904 0.90269 0.90235 0.90591 0.90196 0.90068 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -15.19 9.32 -34.44 -0.32 -15.51 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.39 5.44 -4.97 -0.03 5.36 16 10 N -0.69 -15.95 6.49 -115.05 -0.75 -16.69 16 11 C 0.06 1.23 5.60 -3.82 -0.02 1.21 16 12 C -0.12 -1.89 5.05 -26.73 -0.14 -2.03 16 13 C 0.08 1.07 3.51 -26.00 -0.09 0.98 16 14 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 15 C -0.15 -1.48 6.55 -24.78 -0.16 -1.64 16 16 C -0.16 -1.37 7.16 -24.48 -0.18 -1.55 16 17 C 0.05 0.54 7.78 38.19 0.30 0.83 16 18 O -0.37 -5.58 10.64 -35.23 -0.37 -5.95 16 19 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 20 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 21 H -0.01 -0.43 8.14 -51.93 -0.42 -0.86 16 22 H 0.33 7.01 8.72 -39.29 -0.34 6.67 16 23 H 0.07 1.48 7.89 -51.93 -0.41 1.07 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.08 0.75 7.85 -51.93 -0.41 0.35 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 267.27 15.07 4.03 4.03 Total: -1.00 -31.96 267.27 -7.47 -39.43 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.36 Total: -0.18 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.73 Total: -10.83 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.01 Total: -43.69 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.37 Total: -5.95 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.96 -7.47 -39.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038097234.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.184 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds