Wall clock time and date at job start Mon Mar 30 2020 02:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99775 * 2 1 4 4 H 1.48497 * 109.46973 * 240.00033 * 3 2 1 5 5 H 1.48501 * 109.46869 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46987 * 119.99736 * 3 2 1 7 7 C 1.37872 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00196 * 180.02562 * 7 2 1 9 9 C 1.50711 * 119.99994 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47089 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99883 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46970 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46986 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.82434 * 305.70169 * 13 12 11 15 15 C 1.54386 * 109.90472 * 184.76566 * 13 12 11 16 16 C 1.55306 * 102.25271 * 219.08621 * 15 13 12 17 17 C 1.54950 * 100.94218 * 34.13402 * 16 15 13 18 18 O 1.43241 * 109.83035 * 66.58642 * 13 12 11 19 19 H 0.96999 * 120.00746 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.46682 * 59.99704 * 9 7 2 21 21 H 1.08998 * 109.46627 * 299.99971 * 9 7 2 22 22 H 1.00897 * 111.00345 * 56.04162 * 10 9 7 23 23 H 1.09002 * 109.47451 * 60.00171 * 11 10 9 24 24 H 1.09004 * 109.47333 * 299.99415 * 11 10 9 25 25 H 1.09002 * 109.47270 * 60.00161 * 12 11 10 26 26 H 1.09003 * 109.47157 * 299.99649 * 12 11 10 27 27 H 1.09000 * 110.84933 * 337.27932 * 15 13 12 28 28 H 1.09001 * 110.84623 * 100.89979 * 15 13 12 29 29 H 1.09002 * 111.12884 * 276.21730 * 16 15 13 30 30 H 1.08997 * 111.16217 * 152.06820 * 16 15 13 31 31 H 1.08992 * 110.31012 * 204.63970 * 17 16 15 32 32 H 1.08997 * 110.30842 * 82.46698 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5054 -4.9070 0.0012 12 6 2.5304 -6.0430 0.0019 13 6 1.8011 -7.3880 0.0019 14 1 1.0985 -7.4275 0.8344 15 6 2.8221 -8.5396 0.1232 16 6 2.2310 -9.6067 -0.8379 17 6 1.6132 -8.7041 -1.9354 18 8 1.0992 -7.5602 -1.2348 19 1 -0.4851 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8903 22 1 2.8400 -3.5483 0.7835 23 1 0.8815 -4.9817 -0.8895 24 1 0.8796 -4.9814 0.8906 25 1 3.1547 -5.9686 0.8923 26 1 3.1559 -5.9685 -0.8877 27 1 3.8090 -8.2200 -0.2117 28 1 2.8615 -8.9171 1.1450 29 1 1.4646 -10.2015 -0.3410 30 1 3.0145 -10.2438 -1.2483 31 1 0.8061 -9.2287 -2.4466 32 1 2.3784 -8.3984 -2.6489 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038097234.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:58 Heat of formation + Delta-G solvation = -86.666621 kcal Electronic energy + Delta-G solvation = -12515.578746 eV Core-core repulsion = 10281.326630 eV Total energy + Delta-G solvation = -2234.252115 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.43859 -37.36910 -34.86803 -33.18178 -32.58199 -29.34897 -27.21361 -24.23364 -23.27246 -22.25745 -21.65513 -18.58173 -17.92039 -16.95672 -16.76856 -16.30193 -15.56573 -15.12220 -14.71320 -14.44015 -14.16494 -13.75730 -13.53821 -12.80517 -12.77600 -12.65673 -12.54181 -12.25162 -12.14895 -11.83830 -11.68678 -11.59076 -11.20179 -10.67120 -10.43829 -9.16604 -8.23536 -6.36359 1.40876 1.45725 1.53785 2.39880 2.96741 3.09176 3.45976 3.63929 4.00369 4.04408 4.14927 4.28257 4.31921 4.45582 4.64420 4.83887 4.86165 4.88252 4.94689 4.99886 5.05268 5.13957 5.20394 5.26062 5.38225 5.59720 5.99211 6.18957 6.41890 6.70492 6.87707 7.35002 8.88390 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.093525 B = 0.005384 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 299.313132 B = 5199.385460 C = 5314.978992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.980 3.020 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.206 3.794 10 N -0.691 5.691 11 C 0.065 3.935 12 C -0.112 4.112 13 C 0.076 3.924 14 H 0.076 0.924 15 C -0.144 4.144 16 C -0.147 4.147 17 C 0.037 3.963 18 O -0.410 6.410 19 H 0.266 0.734 20 H -0.006 1.006 21 H -0.040 1.040 22 H 0.337 0.663 23 H 0.046 0.954 24 H 0.013 0.987 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.330 -18.145 0.533 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.803 3.197 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.079 3.921 10 N -0.321 5.321 11 C -0.065 4.065 12 C -0.150 4.150 13 C 0.018 3.982 14 H 0.094 0.906 15 C -0.182 4.182 16 C -0.185 4.185 17 C -0.039 4.039 18 O -0.330 6.330 19 H 0.075 0.925 20 H 0.012 0.988 21 H -0.023 1.023 22 H 0.154 0.846 23 H 0.064 0.936 24 H 0.031 0.969 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.094 -17.896 -0.227 18.906 hybrid contribution -0.385 0.894 0.820 1.273 sum 5.708 -17.002 0.593 17.944 Atomic orbital electron populations 1.70104 1.08015 1.28218 1.51314 1.26048 0.95837 1.03689 0.94338 0.85290 0.78025 0.77102 0.79283 1.19251 1.20661 1.18780 1.21532 0.93903 0.91294 1.51044 0.91462 1.19213 0.90739 0.89252 0.92934 1.60533 1.20688 1.01695 1.49215 1.21863 0.96240 0.89672 0.98729 1.21878 0.97392 0.92654 1.03115 1.22855 0.93886 0.94664 0.86753 0.90586 1.23175 0.98816 0.94043 1.02157 1.23254 1.01470 0.97770 0.95974 1.23600 0.98997 0.85967 0.95367 1.88470 1.60681 1.49574 1.34263 0.92516 0.98808 1.02257 0.84631 0.93586 0.96876 0.89503 0.91579 0.89756 0.88235 0.89766 0.87863 0.89024 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.69 13.29 21.45 0.28 -58.41 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.98 45.28 29.54 68.60 2.03 47.30 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.54 -32.22 9.32 25.60 0.24 -31.98 16 8 H 0.07 3.85 7.81 -2.91 -0.02 3.82 16 9 C 0.21 11.93 5.44 85.56 0.47 12.40 16 10 N -0.69 -32.33 6.49 -517.92 -3.36 -35.69 16 11 C 0.06 2.58 5.60 86.31 0.48 3.06 16 12 C -0.11 -3.32 5.05 30.60 0.15 -3.17 16 13 C 0.08 1.92 3.51 31.07 0.11 2.03 16 14 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 15 C -0.14 -2.43 6.55 31.86 0.21 -2.22 16 16 C -0.15 -2.15 7.16 32.05 0.23 -1.92 16 17 C 0.04 0.75 7.78 72.65 0.57 1.32 16 18 O -0.41 -12.16 10.64 -148.98 -1.59 -13.75 16 19 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 20 H -0.01 -0.40 8.14 -2.39 -0.02 -0.41 16 21 H -0.04 -2.47 8.14 -2.39 -0.02 -2.49 16 22 H 0.34 14.45 8.72 -89.70 -0.78 13.66 16 23 H 0.05 2.04 7.89 -2.39 -0.02 2.02 16 24 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.08 1.35 7.85 -2.39 -0.02 1.33 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -69.65 267.27 0.57 -69.08 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.29 Total: 11.55 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 2.92 Total: -20.09 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -3.08 Total: -94.09 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -1.59 Total: -13.75 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -69.65 0.57 -69.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038097234.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.589 kcal (2) G-P(sol) polarization free energy of solvation -69.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds