Wall clock time and date at job start Mon Mar 30 2020 02:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47648 * 2 1 4 4 N 1.46903 * 109.46728 * 239.99701 * 2 1 3 5 5 C 1.46897 * 111.00241 * 279.59952 * 4 2 1 6 6 C 1.50694 * 109.47366 * 288.25087 * 5 4 2 7 7 H 1.08000 * 119.99849 * 354.95464 * 6 5 4 8 8 C 1.37875 * 120.00414 * 174.95836 * 6 5 4 9 9 N 1.31517 * 119.99730 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00329 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47025 * 59.99851 * 10 8 6 12 12 H 1.48508 * 109.47357 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47023 * 299.99648 * 10 8 6 14 14 C 1.46899 * 110.99790 * 43.55851 * 4 2 1 15 15 C 1.52998 * 109.47592 * 66.04509 * 14 4 2 16 16 H 1.08997 * 115.71492 * 33.05319 * 15 14 4 17 17 C 1.52998 * 117.77253 * 180.02562 * 15 14 4 18 18 O 1.42900 * 57.63419 * 106.84094 * 17 15 14 19 19 H 1.09003 * 109.47339 * 53.62955 * 1 2 3 20 20 H 1.08991 * 109.47394 * 173.63564 * 1 2 3 21 21 H 1.09010 * 109.46757 * 293.63617 * 1 2 3 22 22 H 1.09008 * 109.47260 * 120.00429 * 2 1 3 23 23 H 1.08993 * 109.47205 * 60.00197 * 3 2 1 24 24 H 1.08997 * 109.47398 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.46763 * 300.00341 * 3 2 1 26 26 H 1.08997 * 109.47147 * 48.25287 * 5 4 2 27 27 H 1.09003 * 109.47258 * 168.24935 * 5 4 2 28 28 H 0.96999 * 120.00068 * 179.97438 * 9 8 6 29 29 H 1.09009 * 109.47129 * 186.04426 * 14 4 2 30 30 H 1.09005 * 109.47123 * 306.03903 * 14 4 2 31 31 H 1.09007 * 117.77007 * 213.67528 * 17 15 14 32 32 H 1.09001 * 117.77560 * 359.94475 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0195 -0.6926 -1.1994 5 6 1.9794 -2.1499 -1.0192 6 6 3.0565 -2.5662 -0.0509 7 1 3.7576 -1.8352 0.3239 8 6 3.1470 -3.8803 0.3564 9 7 2.2936 -4.7706 -0.1005 10 14 4.4826 -4.3964 1.5560 11 1 4.3297 -3.6377 2.8234 12 1 4.3643 -5.8507 1.8329 13 1 5.8152 -4.1112 0.9659 14 6 1.2579 -0.2880 -2.3886 15 6 1.5243 1.1888 -2.6869 16 1 2.5234 1.5483 -2.4406 17 6 0.8202 1.8105 -3.8946 18 8 0.4344 2.1029 -2.5500 19 1 -0.3634 0.6094 -0.8275 20 1 -0.3634 -1.0212 -0.1139 21 1 -0.3633 0.4121 0.9416 22 1 1.8934 -0.5139 0.8900 23 1 1.6769 1.9563 0.8899 24 1 3.1301 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.0053 -2.4407 -0.6260 27 1 2.1446 -2.6394 -1.9790 28 1 2.3575 -5.6952 0.1858 29 1 1.5675 -0.8924 -3.2414 30 1 0.1935 -0.4356 -2.2060 31 1 1.3516 2.5835 -4.4499 32 1 0.1636 1.1710 -4.4845 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042528634.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:00 Heat of formation + Delta-G solvation = -0.303745 kcal Electronic energy + Delta-G solvation = -13365.218020 eV Core-core repulsion = 11134.710880 eV Total energy + Delta-G solvation = -2230.507140 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.30066 -37.30535 -32.80673 -30.97467 -28.77967 -26.73027 -26.04421 -24.64485 -22.01572 -21.14971 -19.00621 -16.26419 -16.21961 -15.63563 -14.98133 -14.68595 -14.15379 -14.01470 -12.96491 -12.64107 -12.24355 -11.98144 -11.54849 -11.47448 -11.34861 -10.93174 -10.78025 -10.63368 -10.44407 -10.16870 -10.11613 -9.73879 -9.53099 -9.18791 -8.42118 -7.23331 -6.01521 -4.02736 3.34432 3.38279 3.41332 3.73025 4.36199 4.44577 4.83311 5.09066 5.25419 5.33519 5.47566 5.72413 5.75955 5.78923 5.88059 6.09050 6.16684 6.20072 6.29068 6.42865 6.49072 6.62048 6.85837 6.94916 7.29403 7.40906 7.83870 8.11134 8.21127 8.55314 9.05601 9.61396 11.08918 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.054556 B = 0.008922 C = 0.008550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.113107 B = 3137.384195 C = 3273.929237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.082 3.918 3 C -0.154 4.154 4 N -0.528 5.528 5 C 0.192 3.808 6 C -0.505 4.505 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.898 3.102 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.058 3.942 15 C 0.016 3.984 16 H 0.131 0.869 17 C -0.054 4.054 18 O -0.363 6.363 19 H 0.058 0.942 20 H 0.054 0.946 21 H 0.047 0.953 22 H 0.089 0.911 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.000 1.000 27 H 0.026 0.974 28 H 0.261 0.739 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.104 0.896 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.810 9.707 -4.472 10.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.027 4.027 3 C -0.212 4.212 4 N -0.252 5.252 5 C 0.067 3.933 6 C -0.543 4.543 7 H 0.081 0.919 8 C -0.147 4.147 9 N -0.539 5.539 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.070 4.070 15 C -0.041 4.041 16 H 0.148 0.852 17 C -0.130 4.130 18 O -0.284 6.284 19 H 0.077 0.923 20 H 0.073 0.927 21 H 0.066 0.934 22 H 0.107 0.893 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.017 0.983 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.122 0.878 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.578 9.805 -4.302 10.822 hybrid contribution -0.305 -0.577 0.838 1.062 sum -1.883 9.228 -3.464 10.035 Atomic orbital electron populations 1.22447 0.98749 1.01575 1.01270 1.21556 0.91707 0.94321 0.95147 1.22218 1.01129 0.96489 1.01351 1.62314 1.51722 1.10471 1.00738 1.19743 0.96466 0.80033 0.97085 1.21119 1.13917 0.93718 1.25593 0.91868 1.24990 0.96305 0.96624 0.96735 1.69949 1.36604 1.02749 1.44648 0.86564 0.82235 0.77232 0.81390 1.20316 1.21407 1.20173 1.22050 0.97502 0.91375 0.96117 1.23924 0.91349 0.91372 0.97478 0.85210 1.24346 1.02602 1.02534 0.83543 1.91635 1.51642 1.64041 1.21052 0.92293 0.92717 0.93386 0.89310 0.93807 0.92575 0.91512 0.98263 0.95620 0.92906 0.89738 0.93910 0.87757 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.39 7.95 37.16 0.30 -3.10 16 2 C 0.08 1.63 2.73 -67.71 -0.18 1.44 16 3 C -0.15 -2.65 8.55 37.16 0.32 -2.33 16 4 N -0.53 -11.22 4.42 -228.08 -1.01 -12.23 16 5 C 0.19 4.91 4.65 -4.98 -0.02 4.89 16 6 C -0.50 -14.07 8.28 -34.44 -0.29 -14.36 16 7 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 10 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.06 1.04 4.85 -3.83 -0.02 1.02 16 15 C 0.02 0.24 4.04 -26.73 -0.11 0.13 16 16 H 0.13 1.92 7.18 -51.93 -0.37 1.55 16 17 C -0.05 -0.65 11.41 37.16 0.42 -0.23 16 18 O -0.36 -5.86 12.26 -35.23 -0.43 -6.30 16 19 H 0.06 1.07 5.38 -51.93 -0.28 0.79 16 20 H 0.05 1.10 6.92 -51.93 -0.36 0.74 16 21 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 22 H 0.09 1.99 7.10 -51.92 -0.37 1.62 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.11 3.58 -51.93 -0.19 0.93 16 26 H 0.00 -0.01 6.84 -51.93 -0.36 -0.37 16 27 H 0.03 0.69 7.81 -51.93 -0.41 0.29 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.08 1.43 7.86 -51.92 -0.41 1.02 16 30 H 0.04 0.79 5.94 -51.93 -0.31 0.48 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 254.20 15.07 3.83 3.83 Total: -1.00 -29.75 254.20 -6.28 -36.02 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.70 Total: -0.98 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 0.32 Total: -11.10 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.27 Total: -38.09 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.43 Total: -6.30 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.75 -6.28 -36.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042528634.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.719 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds