Wall clock time and date at job start Mon Mar 30 2020 02:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47648 * 2 1 4 4 N 1.46903 * 109.46728 * 239.99701 * 2 1 3 5 5 C 1.46897 * 111.00241 * 279.59952 * 4 2 1 6 6 C 1.50694 * 109.47366 * 288.25087 * 5 4 2 7 7 H 1.08000 * 119.99849 * 354.95464 * 6 5 4 8 8 C 1.37875 * 120.00414 * 174.95836 * 6 5 4 9 9 N 1.31517 * 119.99730 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00329 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47025 * 59.99851 * 10 8 6 12 12 H 1.48508 * 109.47357 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47023 * 299.99648 * 10 8 6 14 14 C 1.46899 * 110.99790 * 43.55851 * 4 2 1 15 15 C 1.52998 * 109.47592 * 66.04509 * 14 4 2 16 16 H 1.08997 * 115.71492 * 33.05319 * 15 14 4 17 17 C 1.52998 * 117.77253 * 180.02562 * 15 14 4 18 18 O 1.42900 * 57.63419 * 106.84094 * 17 15 14 19 19 H 1.09003 * 109.47339 * 53.62955 * 1 2 3 20 20 H 1.08991 * 109.47394 * 173.63564 * 1 2 3 21 21 H 1.09010 * 109.46757 * 293.63617 * 1 2 3 22 22 H 1.09008 * 109.47260 * 120.00429 * 2 1 3 23 23 H 1.08993 * 109.47205 * 60.00197 * 3 2 1 24 24 H 1.08997 * 109.47398 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.46763 * 300.00341 * 3 2 1 26 26 H 1.08997 * 109.47147 * 48.25287 * 5 4 2 27 27 H 1.09003 * 109.47258 * 168.24935 * 5 4 2 28 28 H 0.96999 * 120.00068 * 179.97438 * 9 8 6 29 29 H 1.09009 * 109.47129 * 186.04426 * 14 4 2 30 30 H 1.09005 * 109.47123 * 306.03903 * 14 4 2 31 31 H 1.09007 * 117.77007 * 213.67528 * 17 15 14 32 32 H 1.09001 * 117.77560 * 359.94475 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0195 -0.6926 -1.1994 5 6 1.9794 -2.1499 -1.0192 6 6 3.0565 -2.5662 -0.0509 7 1 3.7576 -1.8352 0.3239 8 6 3.1470 -3.8803 0.3564 9 7 2.2936 -4.7706 -0.1005 10 14 4.4826 -4.3964 1.5560 11 1 4.3297 -3.6377 2.8234 12 1 4.3643 -5.8507 1.8329 13 1 5.8152 -4.1112 0.9659 14 6 1.2579 -0.2880 -2.3886 15 6 1.5243 1.1888 -2.6869 16 1 2.5234 1.5483 -2.4406 17 6 0.8202 1.8105 -3.8946 18 8 0.4344 2.1029 -2.5500 19 1 -0.3634 0.6094 -0.8275 20 1 -0.3634 -1.0212 -0.1139 21 1 -0.3633 0.4121 0.9416 22 1 1.8934 -0.5139 0.8900 23 1 1.6769 1.9563 0.8899 24 1 3.1301 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.0053 -2.4407 -0.6260 27 1 2.1446 -2.6394 -1.9790 28 1 2.3575 -5.6952 0.1858 29 1 1.5675 -0.8924 -3.2414 30 1 0.1935 -0.4356 -2.2060 31 1 1.3516 2.5835 -4.4499 32 1 0.1636 1.1710 -4.4845 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042528634.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:59 Heat of formation + Delta-G solvation = -21.435467 kcal Electronic energy + Delta-G solvation = -13366.134360 eV Core-core repulsion = 11134.710880 eV Total energy + Delta-G solvation = -2231.423480 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.50786 -38.90297 -34.91404 -32.61595 -30.44816 -28.23293 -27.66414 -26.00803 -23.96562 -22.41395 -20.59867 -18.36823 -17.44129 -17.19367 -16.41237 -16.31176 -15.80226 -15.48779 -14.65156 -14.22257 -14.07444 -13.43898 -13.23775 -12.94394 -12.90444 -12.75178 -12.45870 -12.25584 -12.14635 -11.80945 -11.57579 -11.44859 -11.16397 -10.74053 -10.58446 -8.99031 -8.18110 -6.27860 1.41775 1.44582 1.52489 2.40321 2.62265 3.13868 3.16228 3.43936 3.90640 4.07472 4.15325 4.24389 4.35891 4.55387 4.68591 4.73234 4.77543 4.79078 4.84055 4.99259 5.03926 5.12046 5.21722 5.24745 5.46625 5.51102 5.70020 6.10014 6.37650 6.65140 6.88435 7.41480 8.91979 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.054556 B = 0.008922 C = 0.008550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.113107 B = 3137.384195 C = 3273.929237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.078 3.922 3 C -0.144 4.144 4 N -0.532 5.532 5 C 0.207 3.793 6 C -0.520 4.520 7 H 0.061 0.939 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.967 3.033 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.059 3.941 15 C 0.005 3.995 16 H 0.136 0.864 17 C -0.028 4.028 18 O -0.390 6.390 19 H 0.066 0.934 20 H 0.029 0.971 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.076 0.924 26 H -0.031 1.031 27 H 0.005 0.995 28 H 0.264 0.736 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.138 0.862 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 11.221 -4.745 12.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.030 4.030 3 C -0.201 4.201 4 N -0.256 5.256 5 C 0.080 3.920 6 C -0.558 4.558 7 H 0.079 0.921 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.792 3.208 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.192 1.192 14 C -0.070 4.070 15 C -0.052 4.052 16 H 0.154 0.846 17 C -0.103 4.103 18 O -0.311 6.311 19 H 0.085 0.915 20 H 0.048 0.952 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.095 0.905 26 H -0.013 1.013 27 H 0.023 0.977 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.052 0.948 31 H 0.155 0.845 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.953 11.345 -4.586 12.274 hybrid contribution -0.563 -1.016 0.851 1.440 sum -1.517 10.330 -3.735 11.089 Atomic orbital electron populations 1.22336 0.97869 1.00263 1.02505 1.21579 0.92453 0.95623 0.93373 1.22125 1.01086 0.94245 1.02668 1.62255 1.53056 1.07706 1.02550 1.19386 0.94323 0.82975 0.95275 1.21419 1.14324 0.94027 1.26044 0.92093 1.25885 0.98617 0.96625 0.98509 1.70076 1.38356 1.03108 1.45998 0.85473 0.79375 0.76917 0.79076 1.19535 1.20886 1.19190 1.22086 0.96442 0.93820 0.94611 1.23589 0.91348 0.89281 1.00974 0.84627 1.24830 1.00883 1.02213 0.82409 1.91615 1.51884 1.63921 1.23659 0.91494 0.95176 0.91670 0.92375 0.92178 0.92548 0.90541 1.01325 0.97655 0.92756 0.89369 0.94788 0.84453 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.39 7.95 71.98 0.57 -5.82 16 2 C 0.08 3.14 2.73 44.91 0.12 3.26 16 3 C -0.14 -4.72 8.55 71.98 0.62 -4.10 16 4 N -0.53 -22.88 4.42 -875.52 -3.87 -26.75 16 5 C 0.21 10.99 4.65 85.56 0.40 11.39 16 6 C -0.52 -29.59 8.28 25.60 0.21 -29.38 16 7 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 8 C 0.00 0.08 5.46 84.65 0.46 0.55 16 9 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 10 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 14 C 0.06 2.07 4.85 86.30 0.42 2.49 16 15 C 0.00 0.14 4.04 30.59 0.12 0.26 16 16 H 0.14 3.71 7.18 -2.39 -0.02 3.69 16 17 C -0.03 -0.58 11.41 71.98 0.82 0.24 16 18 O -0.39 -11.55 12.26 -148.98 -1.83 -13.38 16 19 H 0.07 2.38 5.38 -2.39 -0.01 2.37 16 20 H 0.03 1.24 6.92 -2.39 -0.02 1.22 16 21 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 22 H 0.06 2.66 7.10 -2.38 -0.02 2.65 16 23 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.08 2.39 3.58 -2.39 -0.01 2.38 16 26 H -0.03 -1.81 6.84 -2.39 -0.02 -1.83 16 27 H 0.01 0.30 7.81 -2.39 -0.02 0.28 16 28 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.09 2.98 7.86 -2.38 -0.02 2.96 16 30 H 0.03 1.25 5.94 -2.38 -0.01 1.24 16 31 H 0.14 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -64.42 254.20 1.45 -62.97 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.09 Total: 7.86 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 3.75 Total: -21.11 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -3.59 Total: -82.89 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -1.83 Total: -13.38 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -64.42 1.45 -62.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042528634.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.539 kcal (2) G-P(sol) polarization free energy of solvation -64.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds