Wall clock time and date at job start Mon Mar 30 2020 02:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99713 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46778 * 179.97438 * 11 10 9 13 13 H 1.08991 * 109.48182 * 304.98259 * 12 11 10 14 14 C 1.53096 * 109.47767 * 184.94170 * 12 11 10 15 15 C 1.53177 * 109.15813 * 182.40842 * 14 12 11 16 16 C 1.53178 * 109.03608 * 56.98621 * 15 14 12 17 17 C 1.53090 * 109.16214 * 303.01703 * 16 15 14 18 18 O 1.42893 * 109.41728 * 57.60851 * 17 16 15 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 21 21 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 22 22 H 1.00902 * 111.00007 * 56.04449 * 10 9 7 23 23 H 1.09001 * 109.47650 * 299.99732 * 11 10 9 24 24 H 1.09003 * 109.47150 * 60.00131 * 11 10 9 25 25 H 1.08998 * 109.52374 * 302.31755 * 14 12 11 26 26 H 1.09003 * 109.51861 * 62.50700 * 14 12 11 27 27 H 1.08994 * 109.54902 * 297.11585 * 15 14 12 28 28 H 1.09004 * 109.61375 * 176.89297 * 15 14 12 29 29 H 1.08998 * 109.52241 * 183.10908 * 16 15 14 30 30 H 1.09007 * 109.57521 * 62.95228 * 16 15 14 31 31 H 1.08999 * 109.47806 * 297.62006 * 17 16 15 32 32 H 1.09001 * 109.48062 * 177.59245 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 5.4697 -2.6183 -0.0001 12 6 5.9410 -4.0739 0.0004 13 1 5.4925 -4.6009 0.8425 14 6 7.4663 -4.1166 0.1247 15 6 7.9350 -5.5736 0.0639 16 6 7.4404 -6.2036 -1.2418 17 6 5.9161 -6.0802 -1.3133 18 8 5.5461 -4.7031 -1.2204 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6797 -0.8895 21 1 3.8746 -0.6808 0.8905 22 1 3.6259 -3.0952 -0.7817 23 1 5.8466 -2.1143 -0.8901 24 1 5.8466 -2.1144 0.8899 25 1 7.9144 -3.5552 -0.6951 26 1 7.7667 -3.6767 1.0757 27 1 7.5268 -6.1237 0.9117 28 1 9.0240 -5.6093 0.0963 29 1 7.7223 -7.2561 -1.2681 30 1 7.8880 -5.6853 -2.0899 31 1 5.4675 -6.6337 -0.4884 32 1 5.5624 -6.4886 -2.2601 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049855562.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:01 Heat of formation + Delta-G solvation = -63.045090 kcal Electronic energy + Delta-G solvation = -12824.385152 eV Core-core repulsion = 10591.157343 eV Total energy + Delta-G solvation = -2233.227809 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.31561 -35.36016 -33.57758 -32.59373 -31.15757 -27.82173 -25.39411 -23.78037 -21.59991 -20.98218 -20.15061 -16.79907 -16.28130 -15.90604 -14.97677 -14.68731 -14.26946 -14.04158 -13.64860 -13.16426 -12.66388 -12.40987 -12.32813 -11.72127 -11.40148 -11.24603 -11.11654 -10.85330 -10.56594 -10.44760 -10.14698 -9.75570 -9.31089 -9.19785 -8.54555 -7.39367 -6.01447 -3.98885 3.31949 3.38694 3.41967 3.93790 4.46034 4.65835 4.75103 4.82809 4.93320 5.26419 5.31203 5.33804 5.48200 5.55191 5.67042 5.72759 5.79077 5.88608 5.92656 5.98118 6.12308 6.23584 6.36632 6.82757 7.08971 7.42641 7.65746 7.95751 8.44984 8.71045 9.07339 9.60709 11.12000 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.071529 B = 0.006751 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.356122 B = 4146.648926 C = 4397.399405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.268 1.268 6 H -0.286 1.286 7 C -0.514 4.514 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.680 5.680 11 C 0.065 3.935 12 C 0.093 3.907 13 H 0.066 0.934 14 C -0.150 4.150 15 C -0.121 4.121 16 C -0.156 4.156 17 C 0.062 3.938 18 O -0.376 6.376 19 H 0.263 0.737 20 H -0.016 1.016 21 H 0.021 0.979 22 H 0.343 0.657 23 H 0.026 0.974 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.001 -9.887 -1.037 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.193 1.193 6 H -0.212 1.212 7 C -0.553 4.553 8 H 0.097 0.903 9 C 0.035 3.965 10 N -0.311 5.311 11 C -0.065 4.065 12 C 0.035 3.965 13 H 0.084 0.916 14 C -0.189 4.189 15 C -0.159 4.159 16 C -0.194 4.194 17 C -0.016 4.016 18 O -0.295 6.295 19 H 0.073 0.927 20 H 0.002 0.998 21 H 0.039 0.961 22 H 0.161 0.839 23 H 0.044 0.956 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.684 -9.721 -0.498 18.459 hybrid contribution 0.781 1.044 -0.675 1.468 sum 16.465 -8.677 -1.173 18.648 Atomic orbital electron populations 1.69907 1.06155 1.26813 1.51200 1.24914 0.94758 0.98942 0.94789 0.86810 0.80280 0.83817 0.78534 1.20168 1.19266 1.21217 1.21083 0.88995 0.94832 1.50343 0.90279 1.20004 0.96657 0.85192 0.94649 1.60498 1.04007 1.16594 1.50006 1.21942 0.91547 0.92799 1.00255 1.22232 0.92447 0.94630 0.87226 0.91591 1.22193 0.96984 0.96918 1.02758 1.21569 1.00601 0.96044 0.97639 1.22201 0.97554 1.01077 0.98582 1.22502 0.93481 0.83668 1.01905 1.87956 1.79410 1.23282 1.38839 0.92696 0.99828 0.96137 0.83859 0.95576 0.90572 0.91247 0.90868 0.91846 0.91797 0.91268 0.91268 0.93306 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.51 -15.29 9.87 -34.44 -0.34 -15.63 16 8 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.16 4.15 4.51 -4.98 -0.02 4.13 16 10 N -0.68 -15.10 6.49 -115.05 -0.75 -15.85 16 11 C 0.06 1.16 5.39 -3.82 -0.02 1.14 16 12 C 0.09 1.39 2.88 -26.68 -0.08 1.31 16 13 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 14 C -0.15 -1.77 5.42 -26.59 -0.14 -1.92 16 15 C -0.12 -1.20 6.03 -26.55 -0.16 -1.36 16 16 C -0.16 -1.54 6.14 -26.59 -0.16 -1.70 16 17 C 0.06 0.73 6.84 37.20 0.25 0.98 16 18 O -0.38 -5.93 9.93 -35.23 -0.35 -6.28 16 19 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 20 H -0.02 -0.41 7.20 -51.93 -0.37 -0.78 16 21 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 22 H 0.34 7.71 8.28 -39.29 -0.33 7.39 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 260.12 15.07 3.92 3.92 Total: -1.00 -31.67 260.12 -7.17 -38.84 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.33 Total: 0.62 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -0.77 Total: -11.13 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.03 Total: -43.41 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.35 Total: -6.28 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.67 -7.17 -38.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049855562.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.201 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds