Wall clock time and date at job start Mon Mar 30 2020 02:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 O 1.42902 * 109.47288 * 179.97438 * 10 9 7 12 12 C 1.42901 * 114.00184 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47275 * 180.02562 * 12 11 10 14 14 H 1.09006 * 109.87718 * 305.41742 * 13 12 11 15 15 C 1.54319 * 109.88920 * 184.22486 * 13 12 11 16 16 C 1.55148 * 103.01688 * 218.30736 * 15 13 12 17 17 C 1.54908 * 101.65088 * 35.65209 * 16 15 13 18 18 N 1.47440 * 109.89391 * 66.44983 * 13 12 11 19 19 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 20 20 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 21 21 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 22 22 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 23 23 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 24 24 H 1.08997 * 109.46757 * 300.00089 * 12 11 10 25 25 H 1.08998 * 109.47198 * 59.99757 * 12 11 10 26 26 H 1.08996 * 110.70302 * 336.68742 * 15 13 12 27 27 H 1.08999 * 110.70749 * 99.92379 * 15 13 12 28 28 H 1.09004 * 110.98764 * 277.55781 * 16 15 13 29 29 H 1.09001 * 111.02091 * 153.75756 * 16 15 13 30 30 H 1.09005 * 110.36963 * 204.09877 * 17 16 15 31 31 H 1.08996 * 110.47014 * 81.80803 * 17 16 15 32 32 H 1.00899 * 111.00504 * 240.68712 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2452 -3.6621 -0.0122 11 8 1.5306 -4.8997 -0.0116 12 6 2.3705 -6.0558 -0.0167 13 6 1.5033 -7.3162 -0.0163 14 1 0.8066 -7.2864 0.8216 15 6 2.3983 -8.5692 0.0852 16 6 1.6908 -9.5810 -0.8544 17 6 1.1695 -8.6519 -1.9790 18 7 0.7583 -7.4130 -1.2849 19 1 -0.4849 0.8401 0.0041 20 1 0.6280 -2.5591 0.8866 21 1 0.6206 -2.5548 -0.8933 22 1 2.8685 -3.6025 -0.9044 23 1 2.8753 -3.6063 0.8756 24 1 2.9964 -6.0462 -0.9090 25 1 3.0031 -6.0493 0.8709 26 1 3.4058 -8.3529 -0.2701 27 1 2.4215 -8.9445 1.1082 28 1 0.8654 -10.0769 -0.3436 29 1 2.3988 -10.3106 -1.2475 30 1 0.3158 -9.1066 -2.4816 31 1 1.9623 -8.4397 -2.6963 32 1 -0.2373 -7.4037 -1.1212 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051816465.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:55 Heat of formation + Delta-G solvation = -84.773924 kcal Electronic energy + Delta-G solvation = -12519.336912 eV Core-core repulsion = 10285.166871 eV Total energy + Delta-G solvation = -2234.170042 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.87235 -38.25112 -35.33971 -32.39878 -31.00684 -30.71649 -26.84443 -25.52762 -22.89634 -22.03792 -21.05070 -18.68546 -18.09542 -16.92901 -16.65643 -16.54862 -16.19157 -15.13288 -14.50345 -14.37262 -14.25993 -13.58018 -13.32663 -12.86646 -12.76477 -12.49683 -12.28217 -12.16013 -12.06761 -11.89408 -11.61654 -11.40386 -11.35868 -10.63272 -10.35291 -9.38328 -8.22719 -6.36441 1.41185 1.45944 1.53955 2.38815 2.92506 3.10650 3.25521 3.74531 3.94445 4.11319 4.26820 4.35744 4.44420 4.51131 4.58609 4.62461 4.76942 4.82121 4.94038 4.95651 5.04244 5.07958 5.34640 5.37465 5.58786 5.73396 6.00285 6.13373 6.48864 6.52852 6.79219 7.33274 8.90340 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.093080 B = 0.005464 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.745605 B = 5122.944126 C = 5249.417859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.030 3.970 10 C 0.086 3.914 11 O -0.406 6.406 12 C 0.070 3.930 13 C 0.078 3.922 14 H 0.063 0.937 15 C -0.128 4.128 16 C -0.144 4.144 17 C 0.043 3.957 18 N -0.700 5.700 19 H 0.266 0.734 20 H -0.007 1.007 21 H -0.009 1.009 22 H 0.038 0.962 23 H 0.044 0.956 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 -17.721 -0.595 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.085 0.915 9 C -0.007 4.007 10 C 0.010 3.990 11 O -0.326 6.326 12 C -0.008 4.008 13 C -0.032 4.032 14 H 0.081 0.919 15 C -0.167 4.167 16 C -0.183 4.183 17 C -0.085 4.085 18 N -0.329 5.329 19 H 0.075 0.925 20 H 0.012 0.988 21 H 0.010 0.990 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.237 -17.182 -0.976 17.989 hybrid contribution -0.174 0.397 0.495 0.658 sum 5.063 -16.785 -0.481 17.538 Atomic orbital electron populations 1.70132 1.08094 1.28166 1.50816 1.26075 0.95837 1.03721 0.94182 0.85333 0.78121 0.77161 0.79393 1.18934 1.20614 1.18779 1.21461 0.93716 0.91518 1.51953 0.91484 1.18909 0.94589 0.91957 0.95289 1.22420 0.94741 0.83185 0.98661 1.87888 1.35197 1.14217 1.95335 1.22728 0.93074 0.85428 0.99525 1.22189 0.95794 0.93516 0.91699 0.91904 1.22757 0.99133 0.93216 1.01556 1.23119 1.00905 0.97797 0.96447 1.22973 1.00940 0.87917 0.96704 1.61395 1.10570 1.39224 1.21749 0.92518 0.98830 0.99048 0.94365 0.93816 0.93965 0.92680 0.90485 0.89195 0.90579 0.88890 0.90167 0.91319 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.75 13.29 21.45 0.28 -58.47 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.98 44.87 29.54 68.60 2.03 46.90 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.55 -32.62 9.11 25.60 0.23 -32.38 16 8 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 9 C 0.03 1.73 5.34 29.85 0.16 1.89 16 10 C 0.09 4.06 5.88 71.98 0.42 4.48 16 11 O -0.41 -17.86 10.32 -148.98 -1.54 -19.40 16 12 C 0.07 2.28 5.44 71.98 0.39 2.67 16 13 C 0.08 2.07 3.63 45.26 0.16 2.24 16 14 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 15 C -0.13 -2.36 6.47 31.78 0.21 -2.15 16 16 C -0.14 -2.20 7.08 31.98 0.23 -1.97 16 17 C 0.04 0.85 7.57 86.77 0.66 1.51 16 18 N -0.70 -19.02 6.99 -482.38 -3.37 -22.40 16 19 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 20 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 21 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 22 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 24 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.08 1.39 7.85 -2.39 -0.02 1.37 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.34 8.91 8.91 -89.69 -0.80 8.11 16 Total: -1.00 -69.30 267.95 0.60 -68.70 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.28 Total: 7.92 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 2.92 Total: -23.26 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -3.09 Total: -80.86 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -1.54 Total: -19.40 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -69.30 0.60 -68.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051816465.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.074 kcal (2) G-P(sol) polarization free energy of solvation -69.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds