Wall clock time and date at job start Mon Mar 30 2020 02:01:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31588 * 1
3 3 Si 1.86800 * 119.99873 * 2 1
4 4 H 1.48492 * 109.47485 * 0.02562 * 3 2 1
5 5 H 1.48505 * 109.46497 * 119.99850 * 3 2 1
6 6 H 1.48500 * 109.47264 * 239.99668 * 3 2 1
7 7 C 1.38633 * 119.99667 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99749 * 180.02562 * 7 2 1
9 9 O 1.34924 * 120.00265 * 359.97438 * 7 2 1
10 10 C 1.42900 * 116.99778 * 179.97438 * 9 7 2
11 11 C 1.53003 * 109.46786 * 179.97438 * 10 9 7
12 12 C 1.53004 * 109.47061 * 180.02562 * 11 10 9
13 13 H 1.08999 * 109.45816 * 305.02344 * 12 11 10
14 14 C 1.53038 * 109.46200 * 185.05787 * 12 11 10
15 15 C 1.53122 * 109.27706 * 180.80308 * 14 12 11
16 16 C 1.53120 * 109.15979 * 57.64989 * 15 14 12
17 17 C 1.53035 * 109.28231 * 302.34912 * 16 15 14
18 18 N 1.46840 * 109.46384 * 65.00076 * 12 11 10
19 19 H 0.97001 * 119.99805 * 179.97438 * 1 2 3
20 20 H 1.09002 * 109.47652 * 300.00253 * 10 9 7
21 21 H 1.08999 * 109.46855 * 60.00794 * 10 9 7
22 22 H 1.08997 * 109.47282 * 300.00042 * 11 10 9
23 23 H 1.09002 * 109.47256 * 60.00815 * 11 10 9
24 24 H 1.09000 * 109.49986 * 300.73955 * 14 12 11
25 25 H 1.08995 * 109.50765 * 60.86304 * 14 12 11
26 26 H 1.08998 * 109.52467 * 297.74864 * 15 14 12
27 27 H 1.09003 * 109.52143 * 177.55617 * 15 14 12
28 28 H 1.09004 * 109.50125 * 182.39966 * 16 15 14
29 29 H 1.09002 * 109.53456 * 62.30822 * 16 15 14
30 30 H 1.09004 * 109.45780 * 299.16010 * 17 16 15
31 31 H 1.08999 * 109.46243 * 179.19898 * 17 16 15
32 32 H 1.00907 * 111.00128 * 57.66259 * 18 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3159 0.0000 0.0000
3 14 2.2498 1.6178 0.0000
4 1 1.2850 2.7465 0.0006
5 1 3.1035 1.6963 1.2126
6 1 3.1037 1.6964 -1.2124
7 6 2.0090 -1.2006 -0.0005
8 1 3.0890 -1.2007 -0.0001
9 8 1.3343 -2.3691 -0.0005
10 6 2.1127 -3.5675 -0.0017
11 6 1.1806 -4.7809 -0.0009
12 6 2.0139 -6.0641 -0.0014
13 1 2.7056 -6.0475 -0.8436
14 6 1.0860 -7.2746 -0.1278
15 6 1.9225 -8.5570 -0.1078
16 6 2.7391 -8.6042 1.1866
17 6 3.6189 -7.3552 1.2749
18 7 2.7721 -6.1557 1.2528
19 1 -0.4850 -0.8401 -0.0004
20 1 2.7409 -3.5921 -0.8921
21 1 2.7420 -3.5928 0.8879
22 1 0.5528 -4.7562 0.8898
23 1 0.5508 -4.7559 -0.8902
24 1 0.3850 -7.2843 0.7068
25 1 0.5349 -7.2143 -1.0662
26 1 2.5967 -8.5656 -0.9642
27 1 1.2624 -9.4232 -0.1539
28 1 3.3688 -9.4939 1.1874
29 1 2.0644 -8.6352 2.0422
30 1 4.3032 -7.3324 0.4268
31 1 4.1911 -7.3788 2.2024
32 1 2.1549 -6.1340 2.0508
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000051862190.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:01:38
Heat of formation + Delta-G solvation = -62.684858 kcal
Electronic energy + Delta-G solvation = -12824.161323 eV
Core-core repulsion = 10590.949134 eV
Total energy + Delta-G solvation = -2233.212188 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-39.02052 -36.25945 -33.10586 -31.64743 -31.31685 -28.20435 -24.15993 -23.51709
-22.54165 -20.57331 -20.37051 -17.77799 -15.56691 -15.35153 -15.00309 -14.47684
-14.15870 -13.95560 -13.72358 -13.49070 -12.96300 -12.26972 -12.07926 -11.48050
-11.41355 -11.07064 -10.69759 -10.67473 -10.58122 -10.46232 -10.03805 -9.87930
-9.33898 -9.05515 -8.20975 -7.82217 -6.18448 -3.47912 3.46723 3.52202
3.69669 4.30570 4.49505 4.66347 4.75652 4.90018 5.02019 5.29919
5.33493 5.45068 5.55519 5.64606 5.68256 5.80530 5.87048 5.88605
5.98972 6.02411 6.11871 6.25018 6.42838 6.66762 6.83546 6.95146
7.18725 7.49762 7.82735 8.96172 9.57445 10.24334 11.29942
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.081265 B = 0.006322 C = 0.006024
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 344.468083 B = 4427.727846 C = 4646.623542
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.918 5.918
2 C -0.012 4.012
3 Si 1.091 2.909
4 H -0.279 1.279
5 H -0.289 1.289
6 H -0.290 1.290
7 C -0.441 4.441
8 H 0.051 0.949
9 O -0.328 6.328
10 C 0.089 3.911
11 C -0.107 4.107
12 C 0.093 3.907
13 H 0.079 0.921
14 C -0.152 4.152
15 C -0.119 4.119
16 C -0.158 4.158
17 C 0.057 3.943
18 N -0.678 5.678
19 H 0.274 0.726
20 H 0.016 0.984
21 H 0.036 0.964
22 H 0.062 0.938
23 H 0.067 0.933
24 H 0.062 0.938
25 H 0.068 0.932
26 H 0.062 0.938
27 H 0.059 0.941
28 H 0.063 0.937
29 H 0.060 0.940
30 H 0.070 0.930
31 H 0.072 0.928
32 H 0.340 0.660
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.983 -16.143 1.218 16.938
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.558 5.558
2 C -0.211 4.211
3 Si 0.918 3.082
4 H -0.204 1.204
5 H -0.216 1.216
6 H -0.216 1.216
7 C -0.520 4.520
8 H 0.068 0.932
9 O -0.244 6.244
10 C 0.012 3.988
11 C -0.145 4.145
12 C -0.017 4.017
13 H 0.097 0.903
14 C -0.191 4.191
15 C -0.156 4.156
16 C -0.198 4.198
17 C -0.073 4.073
18 N -0.307 5.307
19 H 0.083 0.917
20 H 0.034 0.966
21 H 0.054 0.946
22 H 0.081 0.919
23 H 0.085 0.915
24 H 0.081 0.919
25 H 0.087 0.913
26 H 0.080 0.920
27 H 0.077 0.923
28 H 0.082 0.918
29 H 0.079 0.921
30 H 0.089 0.911
31 H 0.091 0.909
32 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 5.129 -14.070 1.001 15.010
hybrid contribution -0.144 -2.624 0.109 2.630
sum 4.985 -16.694 1.110 17.458
Atomic orbital electron populations
1.70569 1.06219 1.30569 1.48451 1.26047 0.97155 1.00357 0.97534
0.83166 0.74201 0.74509 0.76279 1.20392 1.21616 1.21649 1.21677
0.91192 0.84211 1.54970 0.93156 1.85272 1.33549 1.11502 1.94062
1.21907 0.92830 0.85646 0.98450 1.21492 0.97989 0.92685 1.02354
1.21533 0.94066 0.93348 0.92794 0.90280 1.22284 0.98728 0.95507
1.02613 1.21556 0.98648 0.97655 0.97789 1.22284 0.99560 0.99854
0.98090 1.22010 0.95614 0.87310 1.02337 1.60641 1.26953 1.38600
1.04495 0.91663 0.96595 0.94576 0.91886 0.91470 0.91936 0.91318
0.91969 0.92265 0.91807 0.92134 0.91118 0.90914 0.84145
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -30.34 13.70 55.48 0.76 -29.58 16
2 C -0.01 -0.36 5.49 -17.51 -0.10 -0.46 16
3 Si 1.09 26.56 29.92 -169.99 -5.09 21.48 16
4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
6 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16
7 C -0.44 -13.85 9.89 30.88 0.31 -13.55 16
8 H 0.05 1.52 7.77 -52.48 -0.41 1.12 16
9 O -0.33 -9.87 9.18 -16.49 -0.15 -10.02 16
10 C 0.09 2.10 5.90 37.16 0.22 2.32 16
11 C -0.11 -1.98 5.21 -26.73 -0.14 -2.12 16
12 C 0.09 1.34 2.42 -67.72 -0.16 1.18 16
13 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16
14 C -0.15 -1.81 5.36 -26.65 -0.14 -1.96 16
15 C -0.12 -1.21 6.00 -26.61 -0.16 -1.37 16
16 C -0.16 -1.53 6.08 -26.65 -0.16 -1.69 16
17 C 0.06 0.64 6.55 -3.84 -0.03 0.61 16
18 N -0.68 -9.42 5.95 -106.77 -0.64 -10.06 16
19 H 0.27 9.25 7.97 -40.82 -0.33 8.92 16
20 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16
21 H 0.04 0.86 7.75 -51.93 -0.40 0.46 16
22 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
23 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16
24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16
31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
32 H 0.34 4.55 8.79 -39.29 -0.35 4.20 16
LS Contribution 262.97 15.07 3.96 3.96
Total: -1.00 -34.22 262.97 -6.86 -41.08
By element:
Atomic # 1 Polarization: 5.52 SS G_CDS: -5.35 Total: 0.17 kcal
Atomic # 6 Polarization: -16.66 SS G_CDS: -0.36 Total: -17.02 kcal
Atomic # 7 Polarization: -39.77 SS G_CDS: 0.12 Total: -39.64 kcal
Atomic # 8 Polarization: -9.87 SS G_CDS: -0.15 Total: -10.02 kcal
Atomic # 14 Polarization: 26.56 SS G_CDS: -5.09 Total: 21.48 kcal
Total LS contribution 3.96 Total: 3.96 kcal
Total: -34.22 -6.86 -41.08 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000051862190.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.606 kcal
(2) G-P(sol) polarization free energy of solvation -34.215 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.821 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.685 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds