Wall clock time and date at job start Mon Mar 30 2020 02:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48492 * 109.47485 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46497 * 119.99850 * 3 2 1 6 6 H 1.48500 * 109.47264 * 239.99668 * 3 2 1 7 7 C 1.38633 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99749 * 180.02562 * 7 2 1 9 9 O 1.34924 * 120.00265 * 359.97438 * 7 2 1 10 10 C 1.42900 * 116.99778 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46786 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47061 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.45816 * 305.02344 * 12 11 10 14 14 C 1.53038 * 109.46200 * 185.05787 * 12 11 10 15 15 C 1.53122 * 109.27706 * 180.80308 * 14 12 11 16 16 C 1.53120 * 109.15979 * 57.64989 * 15 14 12 17 17 C 1.53035 * 109.28231 * 302.34912 * 16 15 14 18 18 N 1.46840 * 109.46384 * 65.00076 * 12 11 10 19 19 H 0.97001 * 119.99805 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47652 * 300.00253 * 10 9 7 21 21 H 1.08999 * 109.46855 * 60.00794 * 10 9 7 22 22 H 1.08997 * 109.47282 * 300.00042 * 11 10 9 23 23 H 1.09002 * 109.47256 * 60.00815 * 11 10 9 24 24 H 1.09000 * 109.49986 * 300.73955 * 14 12 11 25 25 H 1.08995 * 109.50765 * 60.86304 * 14 12 11 26 26 H 1.08998 * 109.52467 * 297.74864 * 15 14 12 27 27 H 1.09003 * 109.52143 * 177.55617 * 15 14 12 28 28 H 1.09004 * 109.50125 * 182.39966 * 16 15 14 29 29 H 1.09002 * 109.53456 * 62.30822 * 16 15 14 30 30 H 1.09004 * 109.45780 * 299.16010 * 17 16 15 31 31 H 1.08999 * 109.46243 * 179.19898 * 17 16 15 32 32 H 1.00907 * 111.00128 * 57.66259 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1035 1.6963 1.2126 6 1 3.1037 1.6964 -1.2124 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2007 -0.0001 9 8 1.3343 -2.3691 -0.0005 10 6 2.1127 -3.5675 -0.0017 11 6 1.1806 -4.7809 -0.0009 12 6 2.0139 -6.0641 -0.0014 13 1 2.7056 -6.0475 -0.8436 14 6 1.0860 -7.2746 -0.1278 15 6 1.9225 -8.5570 -0.1078 16 6 2.7391 -8.6042 1.1866 17 6 3.6189 -7.3552 1.2749 18 7 2.7721 -6.1557 1.2528 19 1 -0.4850 -0.8401 -0.0004 20 1 2.7409 -3.5921 -0.8921 21 1 2.7420 -3.5928 0.8879 22 1 0.5528 -4.7562 0.8898 23 1 0.5508 -4.7559 -0.8902 24 1 0.3850 -7.2843 0.7068 25 1 0.5349 -7.2143 -1.0662 26 1 2.5967 -8.5656 -0.9642 27 1 1.2624 -9.4232 -0.1539 28 1 3.3688 -9.4939 1.1874 29 1 2.0644 -8.6352 2.0422 30 1 4.3032 -7.3324 0.4268 31 1 4.1911 -7.3788 2.2024 32 1 2.1549 -6.1340 2.0508 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051862190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:38 Heat of formation + Delta-G solvation = -62.684858 kcal Electronic energy + Delta-G solvation = -12824.161323 eV Core-core repulsion = 10590.949134 eV Total energy + Delta-G solvation = -2233.212188 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.02052 -36.25945 -33.10586 -31.64743 -31.31685 -28.20435 -24.15993 -23.51709 -22.54165 -20.57331 -20.37051 -17.77799 -15.56691 -15.35153 -15.00309 -14.47684 -14.15870 -13.95560 -13.72358 -13.49070 -12.96300 -12.26972 -12.07926 -11.48050 -11.41355 -11.07064 -10.69759 -10.67473 -10.58122 -10.46232 -10.03805 -9.87930 -9.33898 -9.05515 -8.20975 -7.82217 -6.18448 -3.47912 3.46723 3.52202 3.69669 4.30570 4.49505 4.66347 4.75652 4.90018 5.02019 5.29919 5.33493 5.45068 5.55519 5.64606 5.68256 5.80530 5.87048 5.88605 5.98972 6.02411 6.11871 6.25018 6.42838 6.66762 6.83546 6.95146 7.18725 7.49762 7.82735 8.96172 9.57445 10.24334 11.29942 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.081265 B = 0.006322 C = 0.006024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.468083 B = 4427.727846 C = 4646.623542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 1.091 2.909 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.441 4.441 8 H 0.051 0.949 9 O -0.328 6.328 10 C 0.089 3.911 11 C -0.107 4.107 12 C 0.093 3.907 13 H 0.079 0.921 14 C -0.152 4.152 15 C -0.119 4.119 16 C -0.158 4.158 17 C 0.057 3.943 18 N -0.678 5.678 19 H 0.274 0.726 20 H 0.016 0.984 21 H 0.036 0.964 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.983 -16.143 1.218 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.211 4.211 3 Si 0.918 3.082 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.520 4.520 8 H 0.068 0.932 9 O -0.244 6.244 10 C 0.012 3.988 11 C -0.145 4.145 12 C -0.017 4.017 13 H 0.097 0.903 14 C -0.191 4.191 15 C -0.156 4.156 16 C -0.198 4.198 17 C -0.073 4.073 18 N -0.307 5.307 19 H 0.083 0.917 20 H 0.034 0.966 21 H 0.054 0.946 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.129 -14.070 1.001 15.010 hybrid contribution -0.144 -2.624 0.109 2.630 sum 4.985 -16.694 1.110 17.458 Atomic orbital electron populations 1.70569 1.06219 1.30569 1.48451 1.26047 0.97155 1.00357 0.97534 0.83166 0.74201 0.74509 0.76279 1.20392 1.21616 1.21649 1.21677 0.91192 0.84211 1.54970 0.93156 1.85272 1.33549 1.11502 1.94062 1.21907 0.92830 0.85646 0.98450 1.21492 0.97989 0.92685 1.02354 1.21533 0.94066 0.93348 0.92794 0.90280 1.22284 0.98728 0.95507 1.02613 1.21556 0.98648 0.97655 0.97789 1.22284 0.99560 0.99854 0.98090 1.22010 0.95614 0.87310 1.02337 1.60641 1.26953 1.38600 1.04495 0.91663 0.96595 0.94576 0.91886 0.91470 0.91936 0.91318 0.91969 0.92265 0.91807 0.92134 0.91118 0.90914 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -30.34 13.70 55.48 0.76 -29.58 16 2 C -0.01 -0.36 5.49 -17.51 -0.10 -0.46 16 3 Si 1.09 26.56 29.92 -169.99 -5.09 21.48 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.44 -13.85 9.89 30.88 0.31 -13.55 16 8 H 0.05 1.52 7.77 -52.48 -0.41 1.12 16 9 O -0.33 -9.87 9.18 -16.49 -0.15 -10.02 16 10 C 0.09 2.10 5.90 37.16 0.22 2.32 16 11 C -0.11 -1.98 5.21 -26.73 -0.14 -2.12 16 12 C 0.09 1.34 2.42 -67.72 -0.16 1.18 16 13 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.15 -1.81 5.36 -26.65 -0.14 -1.96 16 15 C -0.12 -1.21 6.00 -26.61 -0.16 -1.37 16 16 C -0.16 -1.53 6.08 -26.65 -0.16 -1.69 16 17 C 0.06 0.64 6.55 -3.84 -0.03 0.61 16 18 N -0.68 -9.42 5.95 -106.77 -0.64 -10.06 16 19 H 0.27 9.25 7.97 -40.82 -0.33 8.92 16 20 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 21 H 0.04 0.86 7.75 -51.93 -0.40 0.46 16 22 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 23 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.34 4.55 8.79 -39.29 -0.35 4.20 16 LS Contribution 262.97 15.07 3.96 3.96 Total: -1.00 -34.22 262.97 -6.86 -41.08 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.35 Total: 0.17 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -0.36 Total: -17.02 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.12 Total: -39.64 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.15 Total: -10.02 kcal Atomic # 14 Polarization: 26.56 SS G_CDS: -5.09 Total: 21.48 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -34.22 -6.86 -41.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051862190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.606 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds