Wall clock time and date at job start Mon Mar 30 2020 02:01:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31589 * 1
3 3 Si 1.86801 * 119.99826 * 2 1
4 4 H 1.48500 * 109.47405 * 270.00118 * 3 2 1
5 5 H 1.48500 * 109.46963 * 30.00552 * 3 2 1
6 6 H 1.48499 * 109.46830 * 150.00240 * 3 2 1
7 7 C 1.38636 * 119.99721 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00264 * 359.97438 * 7 2 1
9 9 O 1.34930 * 119.99370 * 179.97438 * 7 2 1
10 10 C 1.42905 * 116.99586 * 180.02562 * 9 7 2
11 11 C 1.52999 * 109.46735 * 180.02562 * 10 9 7
12 12 C 1.53006 * 109.46626 * 179.97438 * 11 10 9
13 13 H 1.08995 * 109.46327 * 54.97942 * 12 11 10
14 14 C 1.53038 * 109.46062 * 174.94439 * 12 11 10
15 15 C 1.53116 * 109.27947 * 179.19425 * 14 12 11
16 16 C 1.53120 * 109.16170 * 302.34595 * 15 14 12
17 17 C 1.53040 * 109.27454 * 57.65193 * 16 15 14
18 18 N 1.46843 * 109.52677 * 300.81915 * 17 16 15
19 19 H 0.97004 * 119.99870 * 0.02562 * 1 2 3
20 20 H 1.08993 * 109.47057 * 59.99503 * 10 9 7
21 21 H 1.09000 * 109.46838 * 299.99741 * 10 9 7
22 22 H 1.08993 * 109.47839 * 59.99877 * 11 10 9
23 23 H 1.09000 * 109.47160 * 299.99439 * 11 10 9
24 24 H 1.09000 * 109.50363 * 299.13521 * 14 12 11
25 25 H 1.09001 * 109.50521 * 59.24957 * 14 12 11
26 26 H 1.08995 * 109.52250 * 182.43889 * 15 14 12
27 27 H 1.09000 * 109.52063 * 62.24968 * 15 14 12
28 28 H 1.08998 * 109.50272 * 297.71274 * 16 15 14
29 29 H 1.09000 * 109.53836 * 177.61331 * 16 15 14
30 30 H 1.09000 * 109.45682 * 180.80327 * 17 16 15
31 31 H 1.08998 * 109.45781 * 60.83715 * 17 16 15
32 32 H 1.00899 * 111.00306 * 297.64756 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3159 0.0000 0.0000
3 14 2.2498 1.6178 0.0000
4 1 2.4973 2.0465 -1.4001
5 1 1.4473 2.6526 0.7002
6 1 3.5474 1.4402 0.7000
7 6 2.0090 -1.2007 -0.0005
8 1 1.4690 -2.1359 -0.0005
9 8 3.3583 -1.2006 -0.0011
10 6 4.0071 -2.4739 -0.0022
11 6 5.5239 -2.2733 -0.0020
12 6 6.2184 -3.6366 -0.0025
13 1 5.8579 -4.2276 -0.8444
14 6 7.7306 -3.4384 -0.1295
15 6 8.4230 -4.8039 -0.1093
16 6 8.0562 -5.5344 1.1854
17 6 6.5345 -5.6718 1.2742
18 7 5.9192 -4.3387 1.2520
19 1 -0.4850 0.8401 -0.0004
20 1 3.7138 -3.0303 -0.8923
21 1 3.7145 -3.0314 0.8876
22 1 5.8168 -1.7171 0.8884
23 1 5.8167 -1.7156 -0.8915
24 1 7.9536 -2.9311 -1.0681
25 1 8.0900 -2.8358 0.7047
26 1 9.5031 -4.6654 -0.1560
27 1 8.0930 -5.3923 -0.9655
28 1 8.4206 -4.9648 2.0403
29 1 8.5117 -6.5246 1.1869
30 1 6.2693 -6.1789 2.2019
31 1 6.1724 -6.2532 0.4263
32 1 6.2092 -3.7932 2.0498
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000051862192.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:01:40
Heat of formation + Delta-G solvation = -55.668375 kcal
Electronic energy + Delta-G solvation = -12836.525555 eV
Core-core repulsion = 10603.617625 eV
Total energy + Delta-G solvation = -2232.907931 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-39.04112 -36.38147 -33.08579 -31.69653 -31.56071 -28.44550 -24.56463 -23.51722
-22.41292 -20.63078 -20.37281 -17.43320 -15.65862 -15.39185 -15.25802 -14.75486
-14.19999 -13.86700 -13.78294 -13.19451 -12.50075 -12.30640 -12.04952 -11.73737
-11.49781 -11.27437 -11.09913 -10.71383 -10.62243 -10.53363 -10.38095 -9.85200
-9.35804 -9.14853 -8.23134 -8.03077 -5.89373 -3.55214 3.48287 3.50598
3.68065 4.29149 4.59284 4.65724 4.72206 4.88633 4.98455 5.25143
5.31829 5.41580 5.45469 5.60218 5.63912 5.77491 5.85097 5.87287
5.95316 5.99588 6.06600 6.21041 6.37668 6.53572 6.79440 6.92054
7.16645 7.48756 8.05394 8.47841 9.51357 10.10352 11.23980
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.070410 B = 0.006890 C = 0.006494
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 397.577628 B = 4063.015898 C = 4310.569361
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.918 5.918
2 C 0.039 3.961
3 Si 0.908 3.092
4 H -0.283 1.283
5 H -0.292 1.292
6 H -0.266 1.266
7 C -0.349 4.349
8 H 0.077 0.923
9 O -0.341 6.341
10 C 0.091 3.909
11 C -0.110 4.110
12 C 0.092 3.908
13 H 0.081 0.919
14 C -0.152 4.152
15 C -0.119 4.119
16 C -0.159 4.159
17 C 0.057 3.943
18 N -0.677 5.677
19 H 0.267 0.733
20 H 0.023 0.977
21 H 0.043 0.957
22 H 0.063 0.937
23 H 0.068 0.932
24 H 0.068 0.932
25 H 0.062 0.938
26 H 0.058 0.942
27 H 0.062 0.938
28 H 0.060 0.940
29 H 0.063 0.937
30 H 0.073 0.927
31 H 0.071 0.929
32 H 0.340 0.660
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.000 -9.264 1.232 19.399
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.564 5.564
2 C -0.157 4.157
3 Si 0.736 3.264
4 H -0.209 1.209
5 H -0.219 1.219
6 H -0.190 1.190
7 C -0.427 4.427
8 H 0.095 0.905
9 O -0.257 6.257
10 C 0.013 3.987
11 C -0.148 4.148
12 C -0.018 4.018
13 H 0.099 0.901
14 C -0.191 4.191
15 C -0.157 4.157
16 C -0.198 4.198
17 C -0.073 4.073
18 N -0.306 5.306
19 H 0.077 0.923
20 H 0.041 0.959
21 H 0.061 0.939
22 H 0.082 0.918
23 H 0.086 0.914
24 H 0.087 0.913
25 H 0.080 0.920
26 H 0.077 0.923
27 H 0.081 0.919
28 H 0.078 0.922
29 H 0.082 0.918
30 H 0.091 0.909
31 H 0.089 0.911
32 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 16.365 -9.224 1.021 18.813
hybrid contribution 1.200 0.748 0.089 1.417
sum 17.564 -8.476 1.109 19.534
Atomic orbital electron populations
1.69701 1.05327 1.26984 1.54389 1.24331 0.94867 0.98174 0.98340
0.86134 0.79927 0.82328 0.78001 1.20913 1.21877 1.19041 1.20395
0.78711 0.94982 1.48638 0.90495 1.85165 1.20343 1.26132 1.94092
1.21933 0.90288 0.87220 0.99214 1.21528 0.95860 0.94970 1.02438
1.21535 0.92105 0.95231 0.92925 0.90124 1.22287 0.97252 0.97036
1.02575 1.21552 0.99832 0.96445 0.97828 1.22284 0.98802 1.00655
0.98051 1.22011 0.90955 0.91890 1.02415 1.60639 1.61627 1.03930
1.04449 0.92296 0.95860 0.93930 0.91788 0.91365 0.91332 0.91962
0.92307 0.91938 0.92162 0.91808 0.90880 0.91057 0.84140
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -29.41 13.97 55.48 0.77 -28.64 16
2 C 0.04 1.21 5.49 -17.51 -0.10 1.11 16
3 Si 0.91 24.00 28.62 -169.99 -4.86 19.14 16
4 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16
5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16
6 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16
7 C -0.35 -10.78 10.35 30.88 0.32 -10.46 16
8 H 0.08 2.48 8.00 -52.49 -0.42 2.06 16
9 O -0.34 -9.44 8.61 -16.51 -0.14 -9.58 16
10 C 0.09 1.99 5.90 37.16 0.22 2.21 16
11 C -0.11 -1.87 5.21 -26.73 -0.14 -2.01 16
12 C 0.09 1.24 2.42 -67.72 -0.16 1.08 16
13 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
14 C -0.15 -1.69 5.36 -26.65 -0.14 -1.83 16
15 C -0.12 -1.14 6.00 -26.61 -0.16 -1.30 16
16 C -0.16 -1.45 6.08 -26.65 -0.16 -1.61 16
17 C 0.06 0.61 6.55 -3.83 -0.03 0.58 16
18 N -0.68 -8.88 5.95 -106.76 -0.64 -9.52 16
19 H 0.27 7.99 8.31 -40.82 -0.34 7.65 16
20 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
21 H 0.04 0.95 7.75 -51.93 -0.40 0.55 16
22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16
28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
32 H 0.34 4.25 8.79 -39.29 -0.35 3.90 16
LS Contribution 262.40 15.07 3.95 3.95
Total: -1.00 -32.79 262.40 -6.64 -39.43
By element:
Atomic # 1 Polarization: 2.82 SS G_CDS: -5.38 Total: -2.56 kcal
Atomic # 6 Polarization: -11.88 SS G_CDS: -0.35 Total: -12.23 kcal
Atomic # 7 Polarization: -38.29 SS G_CDS: 0.14 Total: -38.16 kcal
Atomic # 8 Polarization: -9.44 SS G_CDS: -0.14 Total: -9.58 kcal
Atomic # 14 Polarization: 24.00 SS G_CDS: -4.86 Total: 19.14 kcal
Total LS contribution 3.95 Total: 3.95 kcal
Total: -32.79 -6.64 -39.43 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000051862192.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.235 kcal
(2) G-P(sol) polarization free energy of solvation -32.794 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.029 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds