Wall clock time and date at job start Mon Mar 30 2020 02:01:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31589 * 1
3 3 Si 1.86801 * 119.99826 * 2 1
4 4 H 1.48500 * 109.47405 * 270.00118 * 3 2 1
5 5 H 1.48500 * 109.46963 * 30.00552 * 3 2 1
6 6 H 1.48499 * 109.46830 * 150.00240 * 3 2 1
7 7 C 1.38636 * 119.99721 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00264 * 359.97438 * 7 2 1
9 9 O 1.34930 * 119.99370 * 179.97438 * 7 2 1
10 10 C 1.42905 * 116.99586 * 180.02562 * 9 7 2
11 11 C 1.52999 * 109.46735 * 180.02562 * 10 9 7
12 12 C 1.53006 * 109.46626 * 179.97438 * 11 10 9
13 13 H 1.08995 * 109.46327 * 54.97942 * 12 11 10
14 14 C 1.53038 * 109.46062 * 174.94439 * 12 11 10
15 15 C 1.53116 * 109.27947 * 179.19425 * 14 12 11
16 16 C 1.53120 * 109.16170 * 302.34595 * 15 14 12
17 17 C 1.53040 * 109.27454 * 57.65193 * 16 15 14
18 18 N 1.46843 * 109.52677 * 300.81915 * 17 16 15
19 19 H 0.97004 * 119.99870 * 0.02562 * 1 2 3
20 20 H 1.08993 * 109.47057 * 59.99503 * 10 9 7
21 21 H 1.09000 * 109.46838 * 299.99741 * 10 9 7
22 22 H 1.08993 * 109.47839 * 59.99877 * 11 10 9
23 23 H 1.09000 * 109.47160 * 299.99439 * 11 10 9
24 24 H 1.09000 * 109.50363 * 299.13521 * 14 12 11
25 25 H 1.09001 * 109.50521 * 59.24957 * 14 12 11
26 26 H 1.08995 * 109.52250 * 182.43889 * 15 14 12
27 27 H 1.09000 * 109.52063 * 62.24968 * 15 14 12
28 28 H 1.08998 * 109.50272 * 297.71274 * 16 15 14
29 29 H 1.09000 * 109.53836 * 177.61331 * 16 15 14
30 30 H 1.09000 * 109.45682 * 180.80327 * 17 16 15
31 31 H 1.08998 * 109.45781 * 60.83715 * 17 16 15
32 32 H 1.00899 * 111.00306 * 297.64756 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3159 0.0000 0.0000
3 14 2.2498 1.6178 0.0000
4 1 2.4973 2.0465 -1.4001
5 1 1.4473 2.6526 0.7002
6 1 3.5474 1.4402 0.7000
7 6 2.0090 -1.2007 -0.0005
8 1 1.4690 -2.1359 -0.0005
9 8 3.3583 -1.2006 -0.0011
10 6 4.0071 -2.4739 -0.0022
11 6 5.5239 -2.2733 -0.0020
12 6 6.2184 -3.6366 -0.0025
13 1 5.8579 -4.2276 -0.8444
14 6 7.7306 -3.4384 -0.1295
15 6 8.4230 -4.8039 -0.1093
16 6 8.0562 -5.5344 1.1854
17 6 6.5345 -5.6718 1.2742
18 7 5.9192 -4.3387 1.2520
19 1 -0.4850 0.8401 -0.0004
20 1 3.7138 -3.0303 -0.8923
21 1 3.7145 -3.0314 0.8876
22 1 5.8168 -1.7171 0.8884
23 1 5.8167 -1.7156 -0.8915
24 1 7.9536 -2.9311 -1.0681
25 1 8.0900 -2.8358 0.7047
26 1 9.5031 -4.6654 -0.1560
27 1 8.0930 -5.3923 -0.9655
28 1 8.4206 -4.9648 2.0403
29 1 8.5117 -6.5246 1.1869
30 1 6.2693 -6.1789 2.2019
31 1 6.1724 -6.2532 0.4263
32 1 6.2092 -3.7932 2.0498
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000051862192.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:01:40
Heat of formation + Delta-G solvation = -78.756849 kcal
Electronic energy + Delta-G solvation = -12837.526747 eV
Core-core repulsion = 10603.617625 eV
Total energy + Delta-G solvation = -2233.909122 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-40.04596 -38.39863 -34.56954 -33.70171 -32.52924 -29.80546 -26.55893 -24.71936
-23.68441 -21.96465 -21.25440 -19.72128 -17.55635 -16.72444 -16.39657 -15.94656
-15.51990 -15.41562 -15.05167 -14.75691 -14.11121 -13.88862 -13.40934 -13.02343
-12.94889 -12.57557 -12.46889 -12.06421 -12.01540 -11.78817 -11.54536 -11.43388
-11.33273 -11.30677 -10.34670 -9.17439 -8.26765 -5.97267 1.38244 1.42887
1.61584 2.45304 3.05470 3.28469 3.33542 3.89161 4.00590 4.08588
4.15863 4.23552 4.45901 4.49499 4.60281 4.67128 4.74163 4.92629
4.94717 5.03710 5.10486 5.14394 5.18350 5.23887 5.25987 5.42790
5.61913 6.14768 6.18939 6.52447 7.12022 7.83401 8.89551
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.070410 B = 0.006890 C = 0.006494
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 397.577628 B = 4063.015898 C = 4310.569361
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.956 5.956
2 C -0.018 4.018
3 Si 0.982 3.018
4 H -0.271 1.271
5 H -0.278 1.278
6 H -0.262 1.262
7 C -0.360 4.360
8 H 0.043 0.957
9 O -0.353 6.353
10 C 0.086 3.914
11 C -0.099 4.099
12 C 0.100 3.900
13 H 0.074 0.926
14 C -0.146 4.146
15 C -0.117 4.117
16 C -0.152 4.152
17 C 0.057 3.943
18 N -0.698 5.698
19 H 0.275 0.725
20 H 0.018 0.982
21 H 0.034 0.966
22 H 0.065 0.935
23 H 0.073 0.927
24 H 0.072 0.928
25 H 0.065 0.935
26 H 0.073 0.927
27 H 0.062 0.938
28 H 0.063 0.937
29 H 0.079 0.921
30 H 0.081 0.919
31 H 0.066 0.934
32 H 0.343 0.657
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.256 -8.802 1.322 21.214
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.603 5.603
2 C -0.211 4.211
3 Si 0.805 3.195
4 H -0.196 1.196
5 H -0.203 1.203
6 H -0.187 1.187
7 C -0.439 4.439
8 H 0.061 0.939
9 O -0.270 6.270
10 C 0.009 3.991
11 C -0.137 4.137
12 C -0.010 4.010
13 H 0.092 0.908
14 C -0.185 4.185
15 C -0.155 4.155
16 C -0.191 4.191
17 C -0.073 4.073
18 N -0.328 5.328
19 H 0.084 0.916
20 H 0.036 0.964
21 H 0.053 0.947
22 H 0.084 0.916
23 H 0.091 0.909
24 H 0.091 0.909
25 H 0.084 0.916
26 H 0.092 0.908
27 H 0.081 0.919
28 H 0.082 0.918
29 H 0.098 0.902
30 H 0.099 0.901
31 H 0.085 0.915
32 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges 18.631 -8.790 1.110 20.631
hybrid contribution 0.449 0.480 0.070 0.661
sum 19.080 -8.311 1.179 20.845
Atomic orbital electron populations
1.69815 1.07022 1.28509 1.54950 1.25295 0.95887 1.02207 0.97661
0.85035 0.78478 0.77296 0.78679 1.19638 1.20313 1.18665 1.20370
0.80211 0.94104 1.49171 0.93886 1.85111 1.18486 1.29205 1.94186
1.22223 0.93164 0.85183 0.98503 1.21494 0.92036 0.97432 1.02754
1.21385 0.93556 0.93030 0.93053 0.90819 1.22207 0.95084 0.98280
1.02959 1.21553 1.00497 0.95366 0.98043 1.22217 0.97375 1.01569
0.97955 1.22054 0.92140 0.90423 1.02656 1.60609 1.62817 1.05027
1.04315 0.91647 0.96369 0.94729 0.91590 0.90876 0.90889 0.91629
0.90832 0.91925 0.91841 0.90237 0.90102 0.91539 0.83835
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -61.88 13.97 21.61 0.30 -61.58 16
2 C -0.02 -1.11 5.49 84.82 0.47 -0.65 16
3 Si 0.98 49.05 28.62 68.60 1.96 51.02 16
4 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16
5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16
6 H -0.26 -12.86 7.11 99.48 0.71 -12.15 16
7 C -0.36 -22.75 10.35 67.91 0.70 -22.04 16
8 H 0.04 2.92 8.00 -2.91 -0.02 2.90 16
9 O -0.35 -19.65 8.61 -81.99 -0.71 -20.36 16
10 C 0.09 3.81 5.90 71.98 0.43 4.23 16
11 C -0.10 -3.27 5.21 30.60 0.16 -3.11 16
12 C 0.10 2.57 2.42 44.94 0.11 2.68 16
13 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16
14 C -0.15 -2.89 5.36 30.65 0.16 -2.73 16
15 C -0.12 -1.91 6.00 30.67 0.18 -1.73 16
16 C -0.15 -2.36 6.08 30.65 0.19 -2.18 16
17 C 0.06 1.10 6.55 86.33 0.57 1.67 16
18 N -0.70 -17.57 5.95 -491.68 -2.93 -20.50 16
19 H 0.27 16.41 8.31 -92.71 -0.77 15.64 16
20 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16
21 H 0.03 1.58 7.75 -2.39 -0.02 1.56 16
22 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16
23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16
24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16
26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16
27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16
30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
31 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16
32 H 0.34 8.16 8.79 -89.69 -0.79 7.37 16
Total: -1.00 -69.92 262.40 1.88 -68.04
By element:
Atomic # 1 Polarization: 6.94 SS G_CDS: 0.29 Total: 7.23 kcal
Atomic # 6 Polarization: -26.82 SS G_CDS: 2.96 Total: -23.85 kcal
Atomic # 7 Polarization: -79.45 SS G_CDS: -2.63 Total: -82.08 kcal
Atomic # 8 Polarization: -19.65 SS G_CDS: -0.71 Total: -20.36 kcal
Atomic # 14 Polarization: 49.05 SS G_CDS: 1.96 Total: 51.02 kcal
Total: -69.92 1.88 -68.04 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000051862192.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.713 kcal
(2) G-P(sol) polarization free energy of solvation -69.924 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.637 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.044 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.757 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds