Wall clock time and date at job start Mon Mar 30 2020 02:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.47079 * 180.02562 * 10 9 7 12 12 C 1.42899 * 113.99778 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47262 * 179.97438 * 12 11 10 14 14 H 1.09000 * 110.27235 * 305.70564 * 13 12 11 15 15 C 1.54592 * 110.31107 * 183.60975 * 13 12 11 16 16 C 1.55104 * 102.84622 * 219.18816 * 15 13 12 17 17 N 1.48536 * 103.28628 * 37.30228 * 16 15 13 18 18 C 1.47901 * 105.81743 * 320.85327 * 17 16 15 19 19 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 21 21 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 22 22 H 1.09004 * 109.46930 * 299.99899 * 10 9 7 23 23 H 1.09000 * 109.47312 * 59.99955 * 10 9 7 24 24 H 1.08997 * 109.47171 * 299.99768 * 12 11 10 25 25 H 1.08999 * 109.47156 * 59.99524 * 12 11 10 26 26 H 1.08995 * 110.72436 * 337.48713 * 15 13 12 27 27 H 1.08996 * 110.72258 * 100.77126 * 15 13 12 28 28 H 1.09007 * 110.59272 * 278.87712 * 16 15 13 29 29 H 1.08993 * 110.69191 * 155.78460 * 16 15 13 30 30 H 1.00895 * 110.99234 * 81.36015 * 17 16 15 31 31 H 1.09000 * 109.91471 * 265.97045 * 18 17 16 32 32 H 1.09003 * 110.07681 * 144.77416 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 8 1.5304 -4.8997 0.0128 12 6 2.3703 -6.0558 0.0191 13 6 1.5030 -7.3162 0.0185 14 1 0.7939 -7.2871 0.8457 15 6 2.3905 -8.5783 0.1165 16 6 1.6845 -9.5716 -0.8430 17 7 1.2229 -8.7022 -1.9554 18 6 0.7559 -7.4503 -1.3214 19 1 -0.4851 -0.8400 -0.0004 20 1 0.6205 -2.5547 0.8933 21 1 0.6280 -2.5591 -0.8867 22 1 2.8757 -3.6068 -0.8739 23 1 2.8676 -3.6021 0.9061 24 1 3.0035 -6.0497 -0.8681 25 1 2.9955 -6.0458 0.9118 26 1 3.4030 -8.3653 -0.2260 27 1 2.4001 -8.9648 1.1355 28 1 0.8367 -10.0457 -0.3482 29 1 2.3873 -10.3211 -1.2067 30 1 1.9718 -8.5202 -2.6065 31 1 -0.3183 -7.5022 -1.1439 32 1 0.9855 -6.5984 -1.9615 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051888402.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:47 Heat of formation + Delta-G solvation = -68.470770 kcal Electronic energy + Delta-G solvation = -12558.485061 eV Core-core repulsion = 10325.021977 eV Total energy + Delta-G solvation = -2233.463084 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.01610 -36.99159 -33.60160 -31.30751 -29.56790 -28.85090 -24.92182 -23.84001 -21.83599 -21.25890 -19.93665 -16.92299 -16.58933 -16.12694 -15.54677 -14.87781 -14.18022 -13.96539 -13.70272 -12.93799 -12.65991 -12.12902 -12.02509 -11.58551 -11.39521 -11.24703 -11.10906 -10.84827 -10.52254 -10.35949 -10.12825 -9.75726 -9.04324 -8.72569 -8.66504 -8.34451 -6.39951 -4.09777 3.42410 3.44860 3.63746 4.03748 4.16108 4.53939 4.62103 4.79119 4.99076 5.23403 5.33310 5.38628 5.38904 5.53828 5.60101 5.73511 5.74256 5.89146 6.11276 6.14669 6.15156 6.19186 6.63720 6.70206 7.21969 7.24912 7.48760 7.81844 8.17237 8.41246 8.83470 9.63263 11.01482 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.093106 B = 0.005464 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.661123 B = 5123.555858 C = 5240.189544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.017 3.983 3 Si 1.072 2.928 4 H -0.287 1.287 5 H -0.281 1.281 6 H -0.287 1.287 7 C -0.607 4.607 8 H 0.049 0.951 9 C 0.012 3.988 10 C 0.076 3.924 11 O -0.393 6.393 12 C 0.070 3.930 13 C -0.117 4.117 14 H 0.085 0.915 15 C -0.152 4.152 16 C 0.043 3.957 17 N -0.678 5.678 18 C 0.049 3.951 19 H 0.271 0.729 20 H 0.015 0.985 21 H 0.015 0.985 22 H 0.036 0.964 23 H 0.036 0.964 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.335 0.665 31 H 0.078 0.922 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -15.779 -0.782 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.187 4.187 3 Si 0.900 3.100 4 H -0.214 1.214 5 H -0.206 1.206 6 H -0.214 1.214 7 C -0.645 4.645 8 H 0.068 0.932 9 C -0.025 4.025 10 C 0.000 4.000 11 O -0.312 6.312 12 C -0.007 4.007 13 C -0.137 4.137 14 H 0.103 0.897 15 C -0.191 4.191 16 C -0.087 4.087 17 N -0.304 5.304 18 C -0.081 4.081 19 H 0.081 0.919 20 H 0.034 0.966 21 H 0.034 0.966 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.150 0.850 31 H 0.096 0.904 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.325 -14.449 -0.910 15.110 hybrid contribution 1.465 -1.207 0.394 1.939 sum 5.790 -15.655 -0.515 16.700 Atomic orbital electron populations 1.70758 1.06875 1.30843 1.45978 1.25884 0.96534 1.02700 0.93596 0.83503 0.74847 0.75129 0.76521 1.21387 1.20626 1.21394 1.21887 0.94251 0.91599 1.56751 0.93235 1.19197 0.94897 0.91218 0.97147 1.22706 0.96014 0.82862 0.98376 1.87909 1.34180 1.13886 1.95270 1.22402 0.92769 0.86193 0.99328 1.22408 0.97930 0.93187 1.00195 0.89674 1.23153 0.99204 0.95469 1.01269 1.23130 0.98621 0.95571 0.91367 1.62750 1.38910 1.13626 1.15154 1.22762 1.00201 0.91495 0.93600 0.91882 0.96649 0.96622 0.94602 0.94577 0.94204 0.94043 0.91351 0.90642 0.90193 0.90830 0.84964 0.90390 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.42 13.65 55.43 0.76 -27.66 16 2 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 3 Si 1.07 25.44 29.90 -169.99 -5.08 20.36 16 4 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.61 -17.75 9.11 -34.44 -0.31 -18.06 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.01 0.34 4.65 -27.88 -0.13 0.21 16 10 C 0.08 1.72 5.88 37.16 0.22 1.93 16 11 O -0.39 -8.03 10.15 -35.23 -0.36 -8.38 16 12 C 0.07 1.09 4.98 37.16 0.19 1.28 16 13 C -0.12 -1.53 3.27 -89.27 -0.29 -1.82 16 14 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 15 C -0.15 -1.52 6.62 -24.78 -0.16 -1.68 16 16 C 0.04 0.41 7.55 -1.81 -0.01 0.39 16 17 N -0.68 -7.72 7.51 -109.98 -0.83 -8.55 16 18 C 0.05 0.65 7.05 -2.76 -0.02 0.63 16 19 H 0.27 8.50 7.22 -40.82 -0.29 8.20 16 20 H 0.02 0.44 8.00 -51.93 -0.42 0.02 16 21 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.65 7.86 -51.93 -0.41 0.24 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.34 3.40 8.92 -39.29 -0.35 3.05 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.08 7.63 -51.93 -0.40 0.69 16 LS Contribution 265.78 15.07 4.01 4.01 Total: -1.00 -31.50 265.78 -7.42 -38.92 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.29 Total: -1.98 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -0.63 Total: -16.71 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.07 Total: -36.21 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.36 Total: -8.38 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.36 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.50 -7.42 -38.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051888402.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.552 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds