Wall clock time and date at job start Mon Mar 30 2020 02:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.47079 * 180.02562 * 10 9 7 12 12 C 1.42899 * 113.99778 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47262 * 179.97438 * 12 11 10 14 14 H 1.09000 * 110.27235 * 305.70564 * 13 12 11 15 15 C 1.54592 * 110.31107 * 183.60975 * 13 12 11 16 16 C 1.55104 * 102.84622 * 219.18816 * 15 13 12 17 17 N 1.48536 * 103.28628 * 37.30228 * 16 15 13 18 18 C 1.47901 * 105.81743 * 320.85327 * 17 16 15 19 19 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 21 21 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 22 22 H 1.09004 * 109.46930 * 299.99899 * 10 9 7 23 23 H 1.09000 * 109.47312 * 59.99955 * 10 9 7 24 24 H 1.08997 * 109.47171 * 299.99768 * 12 11 10 25 25 H 1.08999 * 109.47156 * 59.99524 * 12 11 10 26 26 H 1.08995 * 110.72436 * 337.48713 * 15 13 12 27 27 H 1.08996 * 110.72258 * 100.77126 * 15 13 12 28 28 H 1.09007 * 110.59272 * 278.87712 * 16 15 13 29 29 H 1.08993 * 110.69191 * 155.78460 * 16 15 13 30 30 H 1.00895 * 110.99234 * 81.36015 * 17 16 15 31 31 H 1.09000 * 109.91471 * 265.97045 * 18 17 16 32 32 H 1.09003 * 110.07681 * 144.77416 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 8 1.5304 -4.8997 0.0128 12 6 2.3703 -6.0558 0.0191 13 6 1.5030 -7.3162 0.0185 14 1 0.7939 -7.2871 0.8457 15 6 2.3905 -8.5783 0.1165 16 6 1.6845 -9.5716 -0.8430 17 7 1.2229 -8.7022 -1.9554 18 6 0.7559 -7.4503 -1.3214 19 1 -0.4851 -0.8400 -0.0004 20 1 0.6205 -2.5547 0.8933 21 1 0.6280 -2.5591 -0.8867 22 1 2.8757 -3.6068 -0.8739 23 1 2.8676 -3.6021 0.9061 24 1 3.0035 -6.0497 -0.8681 25 1 2.9955 -6.0458 0.9118 26 1 3.4030 -8.3653 -0.2260 27 1 2.4001 -8.9648 1.1355 28 1 0.8367 -10.0457 -0.3482 29 1 2.3873 -10.3211 -1.2067 30 1 1.9718 -8.5202 -2.6065 31 1 -0.3183 -7.5022 -1.1439 32 1 0.9855 -6.5984 -1.9615 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051888402.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:47 Heat of formation + Delta-G solvation = -91.074353 kcal Electronic energy + Delta-G solvation = -12559.465226 eV Core-core repulsion = 10325.021977 eV Total energy + Delta-G solvation = -2234.443249 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.10602 -38.45656 -35.76616 -32.67267 -31.19438 -29.93127 -26.55290 -25.54939 -23.34985 -22.62228 -21.00637 -19.03236 -17.68220 -17.51838 -16.99351 -16.20169 -15.78367 -15.52766 -14.90343 -14.49298 -14.41286 -13.74083 -13.20875 -13.08988 -12.80511 -12.55294 -12.40600 -12.07940 -11.97000 -11.93063 -11.72347 -11.57244 -10.86322 -10.69337 -10.53717 -9.64067 -8.76841 -6.48624 1.52802 1.62064 1.81646 2.50525 2.73410 3.10528 3.26486 3.61496 3.85959 3.95617 4.20689 4.24521 4.28835 4.31735 4.41605 4.54418 4.61429 4.72202 4.76538 4.91914 5.00629 5.04161 5.13146 5.22094 5.28250 5.72396 5.83233 6.08447 6.28304 6.39375 6.45593 7.35792 8.64507 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.093106 B = 0.005464 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.661123 B = 5123.555858 C = 5240.189544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.037 4.037 3 Si 1.125 2.875 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.624 4.624 8 H 0.059 0.941 9 C 0.011 3.989 10 C 0.092 3.908 11 O -0.413 6.413 12 C 0.065 3.935 13 C -0.116 4.116 14 H 0.075 0.925 15 C -0.142 4.142 16 C 0.044 3.956 17 N -0.684 5.684 18 C 0.051 3.949 19 H 0.254 0.746 20 H -0.009 1.009 21 H -0.009 1.009 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.343 0.657 31 H 0.066 0.934 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.376 -16.528 -0.712 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.235 4.235 3 Si 0.944 3.056 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.661 4.661 8 H 0.078 0.922 9 C -0.026 4.026 10 C 0.016 3.984 11 O -0.333 6.333 12 C -0.012 4.012 13 C -0.137 4.137 14 H 0.094 0.906 15 C -0.181 4.181 16 C -0.085 4.085 17 N -0.311 5.311 18 C -0.079 4.079 19 H 0.064 0.936 20 H 0.009 0.991 21 H 0.009 0.991 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.159 0.841 31 H 0.084 0.916 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.311 -15.248 -0.843 16.524 hybrid contribution 0.818 -1.084 0.363 1.406 sum 7.130 -16.332 -0.480 17.827 Atomic orbital electron populations 1.70904 1.08109 1.29896 1.48105 1.27639 0.96524 1.07111 0.92207 0.82862 0.74051 0.70385 0.78281 1.19029 1.20775 1.19048 1.22307 0.94966 0.92562 1.56283 0.92245 1.19117 0.95340 0.93356 0.94770 1.22303 0.94419 0.82527 0.99166 1.87871 1.35550 1.14466 1.95457 1.22703 0.93037 0.85029 1.00384 1.22428 0.98115 0.93520 0.99603 0.90647 1.23126 0.98910 0.93610 1.02421 1.23219 0.99162 0.95518 0.90596 1.62718 1.39745 1.12727 1.15914 1.22641 0.99740 0.91903 0.93663 0.93633 0.99095 0.99057 0.93699 0.93687 0.93062 0.92841 0.90362 0.89171 0.90146 0.88380 0.84072 0.91557 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.53 13.65 21.45 0.29 -59.24 16 2 C -0.04 -2.21 5.46 84.66 0.46 -1.74 16 3 Si 1.12 50.15 29.90 68.60 2.05 52.20 16 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.62 -36.57 9.11 25.60 0.23 -36.34 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.01 0.63 4.65 29.85 0.14 0.77 16 10 C 0.09 4.12 5.88 71.98 0.42 4.55 16 11 O -0.41 -16.90 10.15 -148.98 -1.51 -18.41 16 12 C 0.06 1.92 4.98 71.98 0.36 2.28 16 13 C -0.12 -2.90 3.27 -9.92 -0.03 -2.93 16 14 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 15 C -0.14 -2.44 6.62 31.86 0.21 -2.23 16 16 C 0.04 0.72 7.55 86.71 0.65 1.37 16 17 N -0.68 -14.49 7.51 -501.88 -3.77 -18.26 16 18 C 0.05 1.32 7.05 86.45 0.61 1.93 16 19 H 0.25 16.63 7.22 -92.71 -0.67 15.96 16 20 H -0.01 -0.56 8.00 -2.39 -0.02 -0.58 16 21 H -0.01 -0.53 8.01 -2.39 -0.02 -0.55 16 22 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 23 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 26 H 0.08 1.23 7.86 -2.39 -0.02 1.21 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.34 6.33 8.92 -89.70 -0.80 5.54 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 32 H 0.06 1.66 7.63 -2.39 -0.02 1.64 16 Total: -1.00 -68.00 265.78 0.50 -67.50 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.38 Total: 8.55 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: 3.06 Total: -32.33 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -3.48 Total: -77.50 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -1.51 Total: -18.41 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 2.05 Total: 52.20 kcal Total: -68.00 0.50 -67.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051888402.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.576 kcal (2) G-P(sol) polarization free energy of solvation -67.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds