Wall clock time and date at job start Mon Mar 30 2020 02:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86794 * 120.00247 * 2 1 4 4 H 1.48500 * 109.47133 * 269.99944 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00130 * 3 2 1 6 6 H 1.48507 * 109.47056 * 149.99994 * 3 2 1 7 7 C 1.38641 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00138 * 0.02562 * 7 2 1 9 9 O 1.34932 * 119.99864 * 179.97438 * 7 2 1 10 10 C 1.42893 * 116.99977 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47223 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47203 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.50309 * 55.07509 * 12 11 10 14 14 C 1.53118 * 109.53413 * 175.17619 * 12 11 10 15 15 C 1.53121 * 109.15998 * 177.61708 * 14 12 11 16 16 C 1.53044 * 109.27467 * 302.34543 * 15 14 12 17 17 N 1.46847 * 109.52516 * 59.18169 * 16 15 14 18 18 C 1.46848 * 111.19556 * 298.25761 * 17 16 15 19 19 H 0.97005 * 119.99965 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47320 * 59.99784 * 10 9 7 21 21 H 1.09002 * 109.47165 * 300.00535 * 10 9 7 22 22 H 1.08995 * 109.46867 * 59.99997 * 11 10 9 23 23 H 1.09002 * 109.46794 * 299.99895 * 11 10 9 24 24 H 1.09004 * 109.52160 * 297.51381 * 14 12 11 25 25 H 1.08992 * 109.52149 * 57.64796 * 14 12 11 26 26 H 1.08996 * 109.50720 * 62.28327 * 15 14 12 27 27 H 1.08999 * 109.50475 * 182.36454 * 15 14 12 28 28 H 1.08999 * 109.45943 * 299.16193 * 16 15 14 29 29 H 1.09003 * 109.46209 * 179.19733 * 16 15 14 30 30 H 1.00901 * 110.99839 * 174.16251 * 17 16 15 31 31 H 1.09000 * 109.46085 * 181.75720 * 18 17 16 32 32 H 1.09003 * 109.46298 * 301.73642 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4473 2.6526 0.7001 6 1 3.5474 1.4400 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3582 -1.2007 0.0000 10 6 4.0069 -2.4740 0.0000 11 6 5.5237 -2.2736 0.0001 12 6 6.2183 -3.6368 -0.0005 13 1 5.8593 -4.2278 -0.8432 14 6 7.7319 -3.4402 -0.1219 15 6 8.4225 -4.8055 -0.0618 16 6 8.0473 -5.5042 1.2472 17 7 6.5898 -5.6695 1.3151 18 6 5.9071 -4.3694 1.3065 19 1 -0.4850 0.8401 0.0004 20 1 3.7137 -3.0312 -0.8897 21 1 3.7143 -3.0308 0.8902 22 1 5.8166 -1.7166 0.8900 23 1 5.8166 -1.7166 -0.8900 24 1 7.9615 -2.9575 -1.0719 25 1 8.0851 -2.8159 0.6988 26 1 8.0983 -5.4149 -0.9053 27 1 9.5030 -4.6691 -0.1054 28 1 8.3842 -4.9010 2.0903 29 1 8.5260 -6.4827 1.2867 30 1 6.3247 -6.2118 2.1236 31 1 4.8312 -4.5236 1.3891 32 1 6.2540 -3.7714 2.1493 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051917884.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:10 Heat of formation + Delta-G solvation = -55.438484 kcal Electronic energy + Delta-G solvation = -12825.847204 eV Core-core repulsion = 10592.949242 eV Total energy + Delta-G solvation = -2232.897962 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.86281 -36.48286 -33.49021 -31.88310 -31.52118 -28.04291 -24.44888 -23.79706 -22.74561 -20.65231 -19.57572 -17.51476 -16.49181 -15.35934 -15.19025 -14.49854 -14.12167 -13.89747 -13.67816 -13.14646 -12.97724 -12.48004 -12.14129 -11.78234 -11.48922 -11.04363 -10.99923 -10.77514 -10.49541 -10.29658 -10.15764 -9.80936 -9.40577 -9.21664 -8.50097 -8.11283 -5.95280 -3.62167 3.44799 3.47487 3.64551 4.16079 4.60441 4.70165 4.87211 4.90485 5.12655 5.23893 5.36695 5.40319 5.54841 5.61317 5.72820 5.79470 5.85591 5.94416 6.00965 6.04863 6.22703 6.29249 6.40619 6.50061 6.72055 6.77327 7.00526 7.32391 7.97601 8.41302 9.45088 10.02300 11.17771 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.069753 B = 0.006861 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.322346 B = 4079.784872 C = 4328.324809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.041 3.959 3 Si 0.908 3.092 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.355 4.355 8 H 0.078 0.922 9 O -0.337 6.337 10 C 0.084 3.916 11 C -0.113 4.113 12 C -0.080 4.080 13 H 0.078 0.922 14 C -0.116 4.116 15 C -0.117 4.117 16 C 0.057 3.943 17 N -0.692 5.692 18 C 0.059 3.941 19 H 0.268 0.732 20 H 0.029 0.971 21 H 0.029 0.971 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.341 0.659 31 H 0.081 0.919 32 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.302 -8.846 1.985 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.155 4.155 3 Si 0.736 3.264 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.433 4.433 8 H 0.095 0.905 9 O -0.253 6.253 10 C 0.007 3.993 11 C -0.151 4.151 12 C -0.099 4.099 13 H 0.097 0.903 14 C -0.154 4.154 15 C -0.155 4.155 16 C -0.072 4.072 17 N -0.323 5.323 18 C -0.070 4.070 19 H 0.078 0.922 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.158 0.842 31 H 0.099 0.901 32 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 16.233 -8.666 1.317 18.448 hybrid contribution 0.312 0.850 0.916 1.288 sum 16.545 -7.816 2.233 18.434 Atomic orbital electron populations 1.69692 1.05346 1.27117 1.53971 1.24329 0.94871 0.98240 0.98092 0.86139 0.79936 0.82238 0.78125 1.20786 1.21790 1.18996 1.20395 0.78631 0.95048 1.49236 0.90461 1.85193 1.20409 1.25658 1.94029 1.22073 0.90940 0.87684 0.98637 1.21533 0.95037 0.95884 1.02676 1.21102 0.94717 0.95966 0.98123 0.90321 1.21629 0.95138 0.96682 1.01932 1.21583 0.99342 0.96632 0.97949 1.21915 0.88620 0.99710 0.96999 1.60273 1.06634 1.18094 1.47277 1.22089 0.99268 0.88896 0.96779 0.92192 0.95307 0.95283 0.91808 0.91387 0.91688 0.92305 0.91200 0.91897 0.95491 0.91193 0.84183 0.90071 0.95135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.03 13.96 55.48 0.77 -28.25 16 2 C 0.04 1.27 5.49 -17.51 -0.10 1.17 16 3 Si 0.91 23.78 28.61 -169.99 -4.86 18.91 16 4 H -0.28 -7.24 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.35 -10.82 10.35 30.88 0.32 -10.50 16 8 H 0.08 2.45 8.00 -52.49 -0.42 2.03 16 9 O -0.34 -9.20 8.61 -16.52 -0.14 -9.35 16 10 C 0.08 1.80 5.77 37.16 0.21 2.01 16 11 C -0.11 -1.93 5.06 -26.73 -0.14 -2.06 16 12 C -0.08 -1.12 2.35 -90.54 -0.21 -1.33 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.12 -1.37 5.29 -26.61 -0.14 -1.51 16 15 C -0.12 -1.20 6.09 -26.65 -0.16 -1.37 16 16 C 0.06 0.58 6.55 -3.83 -0.03 0.55 16 17 N -0.69 -8.05 6.85 -113.81 -0.78 -8.83 16 18 C 0.06 0.78 5.57 -3.83 -0.02 0.76 16 19 H 0.27 7.93 8.31 -40.82 -0.34 7.59 16 20 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.03 0.61 6.59 -51.93 -0.34 0.26 16 22 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.34 3.36 8.90 -39.29 -0.35 3.01 16 31 H 0.08 1.16 6.61 -51.93 -0.34 0.82 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 259.85 15.07 3.92 3.92 Total: -1.00 -32.53 259.85 -6.59 -39.13 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.24 Total: -3.26 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -0.26 Total: -12.28 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.00 Total: -37.08 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.14 Total: -9.35 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -4.86 Total: 18.91 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.53 -6.59 -39.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051917884.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.310 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds