Wall clock time and date at job start Mon Mar 30 2020 02:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86794 * 120.00247 * 2 1 4 4 H 1.48500 * 109.47133 * 269.99944 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00130 * 3 2 1 6 6 H 1.48507 * 109.47056 * 149.99994 * 3 2 1 7 7 C 1.38641 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00138 * 0.02562 * 7 2 1 9 9 O 1.34932 * 119.99864 * 179.97438 * 7 2 1 10 10 C 1.42893 * 116.99977 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47223 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47203 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.50309 * 55.07509 * 12 11 10 14 14 C 1.53118 * 109.53413 * 175.17619 * 12 11 10 15 15 C 1.53121 * 109.15998 * 177.61708 * 14 12 11 16 16 C 1.53044 * 109.27467 * 302.34543 * 15 14 12 17 17 N 1.46847 * 109.52516 * 59.18169 * 16 15 14 18 18 C 1.46848 * 111.19556 * 298.25761 * 17 16 15 19 19 H 0.97005 * 119.99965 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47320 * 59.99784 * 10 9 7 21 21 H 1.09002 * 109.47165 * 300.00535 * 10 9 7 22 22 H 1.08995 * 109.46867 * 59.99997 * 11 10 9 23 23 H 1.09002 * 109.46794 * 299.99895 * 11 10 9 24 24 H 1.09004 * 109.52160 * 297.51381 * 14 12 11 25 25 H 1.08992 * 109.52149 * 57.64796 * 14 12 11 26 26 H 1.08996 * 109.50720 * 62.28327 * 15 14 12 27 27 H 1.08999 * 109.50475 * 182.36454 * 15 14 12 28 28 H 1.08999 * 109.45943 * 299.16193 * 16 15 14 29 29 H 1.09003 * 109.46209 * 179.19733 * 16 15 14 30 30 H 1.00901 * 110.99839 * 174.16251 * 17 16 15 31 31 H 1.09000 * 109.46085 * 181.75720 * 18 17 16 32 32 H 1.09003 * 109.46298 * 301.73642 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4473 2.6526 0.7001 6 1 3.5474 1.4400 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3582 -1.2007 0.0000 10 6 4.0069 -2.4740 0.0000 11 6 5.5237 -2.2736 0.0001 12 6 6.2183 -3.6368 -0.0005 13 1 5.8593 -4.2278 -0.8432 14 6 7.7319 -3.4402 -0.1219 15 6 8.4225 -4.8055 -0.0618 16 6 8.0473 -5.5042 1.2472 17 7 6.5898 -5.6695 1.3151 18 6 5.9071 -4.3694 1.3065 19 1 -0.4850 0.8401 0.0004 20 1 3.7137 -3.0312 -0.8897 21 1 3.7143 -3.0308 0.8902 22 1 5.8166 -1.7166 0.8900 23 1 5.8166 -1.7166 -0.8900 24 1 7.9615 -2.9575 -1.0719 25 1 8.0851 -2.8159 0.6988 26 1 8.0983 -5.4149 -0.9053 27 1 9.5030 -4.6691 -0.1054 28 1 8.3842 -4.9010 2.0903 29 1 8.5260 -6.4827 1.2867 30 1 6.3247 -6.2118 2.1236 31 1 4.8312 -4.5236 1.3891 32 1 6.2540 -3.7714 2.1493 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051917884.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:10 Heat of formation + Delta-G solvation = -78.688642 kcal Electronic energy + Delta-G solvation = -12826.855407 eV Core-core repulsion = 10592.949242 eV Total energy + Delta-G solvation = -2233.906164 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.93814 -38.42553 -34.87459 -33.91610 -32.61927 -29.45853 -26.46098 -24.85040 -24.15724 -21.93619 -20.61062 -19.73729 -17.78068 -17.17484 -16.59350 -15.87822 -15.44082 -15.37075 -14.86558 -14.71799 -14.32565 -13.79608 -13.76444 -13.40094 -12.97060 -12.62069 -12.57092 -11.98615 -11.92451 -11.65704 -11.53472 -11.38096 -11.26485 -11.02975 -10.37274 -9.40808 -8.29521 -6.00663 1.37043 1.41246 1.59817 2.43023 3.02766 3.18634 3.37411 3.83364 3.90246 4.06212 4.16937 4.34652 4.44078 4.50901 4.55265 4.64495 4.69382 4.80191 4.91496 4.99361 5.00645 5.11251 5.16759 5.25473 5.35515 5.50540 5.58132 6.06537 6.12446 6.49272 7.09119 7.79001 8.86498 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.069753 B = 0.006861 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.322346 B = 4079.784872 C = 4328.324809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.016 4.016 3 Si 0.979 3.021 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.364 4.364 8 H 0.046 0.954 9 O -0.351 6.351 10 C 0.076 3.924 11 C -0.101 4.101 12 C -0.074 4.074 13 H 0.070 0.930 14 C -0.114 4.114 15 C -0.115 4.115 16 C 0.054 3.946 17 N -0.699 5.699 18 C 0.061 3.939 19 H 0.275 0.725 20 H 0.026 0.974 21 H 0.031 0.969 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.031 0.969 29 H 0.088 0.912 30 H 0.350 0.650 31 H 0.063 0.937 32 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.561 -8.448 2.111 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.209 4.209 3 Si 0.803 3.197 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.442 4.442 8 H 0.064 0.936 9 O -0.268 6.268 10 C -0.001 4.001 11 C -0.139 4.139 12 C -0.093 4.093 13 H 0.089 0.911 14 C -0.151 4.151 15 C -0.153 4.153 16 C -0.075 4.075 17 N -0.331 5.331 18 C -0.068 4.068 19 H 0.084 0.916 20 H 0.044 0.956 21 H 0.049 0.951 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.049 0.951 29 H 0.107 0.893 30 H 0.169 0.831 31 H 0.082 0.918 32 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 18.502 -8.297 1.446 20.328 hybrid contribution -0.408 0.594 0.879 1.137 sum 18.093 -7.703 2.325 19.802 Atomic orbital electron populations 1.69802 1.06989 1.28579 1.54672 1.25275 0.95869 1.02182 0.97540 0.85068 0.78506 0.77412 0.78731 1.19630 1.20241 1.18692 1.20384 0.80103 0.94229 1.49519 0.93588 1.85131 1.18598 1.28857 1.94171 1.22413 0.93418 0.85700 0.98526 1.21485 0.91660 0.97971 1.02829 1.21035 0.96233 0.93916 0.98153 0.91138 1.21617 0.93125 0.97968 1.02439 1.21592 1.00513 0.95380 0.97781 1.22023 0.87497 1.00894 0.97067 1.60254 1.07736 1.17027 1.48034 1.21961 0.98535 0.89921 0.96430 0.91578 0.95627 0.95091 0.91666 0.91137 0.91092 0.91927 0.91739 0.89666 0.95080 0.89346 0.83098 0.91822 0.95091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.07 13.96 21.61 0.30 -60.77 16 2 C -0.02 -0.96 5.49 84.83 0.47 -0.49 16 3 Si 0.98 48.61 28.61 68.60 1.96 50.57 16 4 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.36 -22.64 10.35 67.92 0.70 -21.93 16 8 H 0.05 3.05 8.00 -2.91 -0.02 3.03 16 9 O -0.35 -19.26 8.61 -82.01 -0.71 -19.96 16 10 C 0.08 3.28 5.77 71.98 0.42 3.69 16 11 C -0.10 -3.36 5.06 30.59 0.15 -3.20 16 12 C -0.07 -1.99 2.35 -10.74 -0.03 -2.01 16 13 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 14 C -0.11 -2.41 5.29 30.67 0.16 -2.25 16 15 C -0.11 -2.03 6.09 30.65 0.19 -1.84 16 16 C 0.05 0.95 6.55 86.33 0.57 1.52 16 17 N -0.70 -15.06 6.85 -513.99 -3.52 -18.58 16 18 C 0.06 1.57 5.57 86.32 0.48 2.05 16 19 H 0.28 16.28 8.31 -92.70 -0.77 15.51 16 20 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.03 1.32 6.59 -2.39 -0.02 1.30 16 22 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 23 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 24 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.35 6.35 8.90 -89.69 -0.80 5.55 16 31 H 0.06 1.84 6.61 -2.39 -0.02 1.82 16 32 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -68.99 259.85 1.43 -67.56 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 0.28 Total: 5.66 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 3.11 Total: -24.48 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -3.22 Total: -79.35 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.71 Total: -19.96 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 1.96 Total: 50.57 kcal Total: -68.99 1.43 -67.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051917884.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.132 kcal (2) G-P(sol) polarization free energy of solvation -68.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds