Wall clock time and date at job start Mon Mar 30 2020 02:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86798 * 120.00005 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99907 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99657 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99368 * 3 2 1 7 7 C 1.38637 * 119.99487 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00309 * 0.02562 * 7 2 1 9 9 O 1.34924 * 119.99722 * 180.02562 * 7 2 1 10 10 C 1.42893 * 117.00075 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47283 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47118 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.50035 * 305.00164 * 12 11 10 14 14 C 1.53112 * 109.49972 * 184.92296 * 12 11 10 15 15 C 1.53120 * 109.15996 * 182.40188 * 14 12 11 16 16 C 1.53046 * 109.27588 * 57.65482 * 15 14 12 17 17 N 1.46844 * 109.52441 * 300.82448 * 16 15 14 18 18 C 1.46842 * 111.23433 * 61.71658 * 17 16 15 19 19 H 0.97005 * 119.99693 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47761 * 299.99848 * 10 9 7 21 21 H 1.09004 * 109.47101 * 60.00242 * 10 9 7 22 22 H 1.08996 * 109.46877 * 300.00243 * 11 10 9 23 23 H 1.09004 * 109.46588 * 60.00253 * 11 10 9 24 24 H 1.08996 * 109.52539 * 302.30690 * 14 12 11 25 25 H 1.09003 * 109.52419 * 62.50306 * 14 12 11 26 26 H 1.09001 * 109.50943 * 177.59131 * 15 14 12 27 27 H 1.08997 * 109.50620 * 297.68039 * 15 14 12 28 28 H 1.09004 * 109.46149 * 60.84014 * 16 15 14 29 29 H 1.08994 * 109.46149 * 180.81660 * 16 15 14 30 30 H 1.00906 * 110.99624 * 297.64470 * 17 16 15 31 31 H 1.09006 * 109.50100 * 178.28512 * 18 17 16 32 32 H 1.09003 * 109.42910 * 58.31779 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 1.4000 5 1 3.5474 1.4400 -0.7000 6 1 1.4474 2.6526 -0.7002 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3582 -1.2007 0.0011 10 6 4.0068 -2.4739 0.0010 11 6 5.5237 -2.2736 0.0010 12 6 6.2183 -3.6369 0.0003 13 1 5.8584 -4.2290 0.8417 14 6 7.7316 -3.4396 0.1242 15 6 8.4231 -4.8044 0.0624 16 6 8.0502 -5.5008 -1.2485 17 7 6.5929 -5.6666 -1.3188 18 6 5.9086 -4.3675 -1.3082 19 1 -0.4850 0.8401 -0.0004 20 1 3.7137 -3.0312 0.8908 21 1 3.7143 -3.0307 -0.8892 22 1 5.8166 -1.7165 -0.8889 23 1 5.8166 -1.7166 0.8911 24 1 8.0857 -2.8144 -0.6954 25 1 7.9596 -2.9586 1.0754 26 1 9.5035 -4.6674 0.1070 27 1 8.0985 -5.4153 0.9047 28 1 8.3879 -4.8957 -2.0900 29 1 8.5293 -6.4789 -1.2891 30 1 6.2596 -6.2563 -0.5709 31 1 4.8328 -4.5221 -1.3919 32 1 6.2557 -3.7679 -2.1498 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051917886.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:12 Heat of formation + Delta-G solvation = -57.422715 kcal Electronic energy + Delta-G solvation = -12842.624403 eV Core-core repulsion = 10609.640398 eV Total energy + Delta-G solvation = -2232.984004 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.09664 -36.52180 -33.44663 -31.79240 -31.47790 -28.08346 -24.45900 -23.69928 -22.76347 -20.76548 -20.10131 -17.49372 -16.07823 -15.54037 -15.29953 -14.75671 -14.09112 -13.88774 -13.73707 -13.18203 -12.53375 -12.26791 -12.12174 -11.81500 -11.51990 -11.30451 -11.07894 -10.97019 -10.71683 -10.54113 -10.20078 -9.85784 -9.44965 -9.24497 -8.35748 -8.12869 -5.96662 -3.63796 3.43891 3.46459 3.63587 4.25581 4.58680 4.61811 4.81738 4.84679 5.01146 5.17284 5.35235 5.38754 5.48755 5.52405 5.67388 5.71979 5.81298 5.93961 5.98124 6.03896 6.15523 6.20929 6.35232 6.40364 6.69525 6.71673 6.98484 7.32337 7.95685 8.39794 9.43582 10.00300 11.16324 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.070325 B = 0.006866 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.054386 B = 4076.902388 C = 4323.657923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.042 3.958 3 Si 0.908 3.092 4 H -0.282 1.282 5 H -0.265 1.265 6 H -0.291 1.291 7 C -0.356 4.356 8 H 0.078 0.922 9 O -0.336 6.336 10 C 0.084 3.916 11 C -0.110 4.110 12 C -0.119 4.119 13 H 0.069 0.931 14 C -0.114 4.114 15 C -0.157 4.157 16 C 0.056 3.944 17 N -0.688 5.688 18 C 0.057 3.943 19 H 0.269 0.731 20 H 0.026 0.974 21 H 0.031 0.969 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.339 0.661 31 H 0.082 0.918 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.204 -8.859 -0.472 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.155 4.155 3 Si 0.736 3.264 4 H -0.208 1.208 5 H -0.190 1.190 6 H -0.217 1.217 7 C -0.434 4.434 8 H 0.095 0.905 9 O -0.252 6.252 10 C 0.006 3.994 11 C -0.148 4.148 12 C -0.140 4.140 13 H 0.087 0.913 14 C -0.152 4.152 15 C -0.197 4.197 16 C -0.074 4.074 17 N -0.315 5.315 18 C -0.072 4.072 19 H 0.078 0.922 20 H 0.044 0.956 21 H 0.049 0.951 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.156 0.844 31 H 0.100 0.900 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.187 -8.656 -1.192 18.394 hybrid contribution 0.274 0.863 1.078 1.407 sum 16.460 -7.794 -0.114 18.212 Atomic orbital electron populations 1.69695 1.05344 1.27142 1.53885 1.24330 0.94873 0.98249 0.98043 0.86138 0.79962 0.82237 0.78099 1.20824 1.18972 1.21744 1.20386 0.78595 0.95057 1.49354 0.90463 1.85193 1.20440 1.25563 1.94026 1.22073 0.90929 0.87792 0.98574 1.21479 0.94982 0.95683 1.02685 1.21796 0.95126 0.97645 0.99389 0.91281 1.21606 0.94800 0.96673 1.02107 1.22272 1.00640 0.97500 0.99251 1.22024 0.88815 1.00133 0.96454 1.60697 1.04497 1.14739 1.51574 1.22207 0.99569 0.89101 0.96345 0.92170 0.95568 0.95074 0.91564 0.91702 0.91789 0.91936 0.91706 0.92130 0.91038 0.91089 0.84404 0.89961 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.93 13.96 55.48 0.77 -28.16 16 2 C 0.04 1.28 5.49 -17.51 -0.10 1.18 16 3 Si 0.91 23.72 28.62 -169.99 -4.86 18.85 16 4 H -0.28 -7.23 7.11 56.52 0.40 -6.82 16 5 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 7 C -0.36 -10.80 10.35 30.88 0.32 -10.48 16 8 H 0.08 2.44 8.00 -52.49 -0.42 2.02 16 9 O -0.34 -9.13 8.61 -16.49 -0.14 -9.27 16 10 C 0.08 1.76 5.77 37.16 0.21 1.98 16 11 C -0.11 -1.84 5.06 -26.72 -0.14 -1.97 16 12 C -0.12 -1.56 2.33 -90.54 -0.21 -1.77 16 13 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 14 C -0.11 -1.28 5.29 -26.61 -0.14 -1.42 16 15 C -0.16 -1.48 6.08 -26.65 -0.16 -1.64 16 16 C 0.06 0.54 6.56 -3.83 -0.03 0.52 16 17 N -0.69 -7.83 6.87 -113.82 -0.78 -8.62 16 18 C 0.06 0.74 5.57 -3.84 -0.02 0.72 16 19 H 0.27 7.92 8.31 -40.82 -0.34 7.58 16 20 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 21 H 0.03 0.64 6.59 -51.93 -0.34 0.30 16 22 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.34 3.51 8.86 -39.29 -0.35 3.16 16 31 H 0.08 1.16 6.61 -51.93 -0.34 0.81 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 259.81 15.07 3.92 3.92 Total: -1.00 -32.18 259.81 -6.59 -38.77 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.24 Total: -2.60 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -0.26 Total: -12.90 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.01 Total: -36.78 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.14 Total: -9.27 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -4.86 Total: 18.85 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.18 -6.59 -38.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051917886.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.648 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds