Wall clock time and date at job start Mon Mar 30 2020 01:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48501 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47264 * 300.00448 * 3 2 1 6 6 H 1.48500 * 109.46969 * 60.00053 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46577 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99800 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46881 * 35.00094 * 11 10 9 13 13 C 1.53006 * 109.47010 * 275.00400 * 11 10 9 14 14 C 1.52995 * 109.46709 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47350 * 59.99805 * 14 13 11 16 16 C 1.52996 * 109.47011 * 299.99740 * 15 14 13 17 17 C 1.52995 * 109.47260 * 60.00311 * 16 15 14 18 18 H 1.08998 * 109.47465 * 180.02562 * 17 16 15 19 19 O 1.42901 * 109.47449 * 59.99342 * 17 16 15 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 22 22 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 23 23 H 1.00896 * 111.00594 * 303.95433 * 10 9 7 24 24 H 1.08998 * 109.47049 * 299.99591 * 13 11 10 25 25 H 1.08993 * 109.47294 * 59.99657 * 13 11 10 26 26 H 1.09001 * 109.47551 * 299.99611 * 14 13 11 27 27 H 1.09009 * 109.46855 * 179.97438 * 14 13 11 28 28 H 1.09001 * 109.47100 * 179.97438 * 15 14 13 29 29 H 1.09003 * 109.46873 * 60.00214 * 15 14 13 30 30 H 1.09001 * 109.47016 * 299.99659 * 16 15 14 31 31 H 1.09002 * 109.46819 * 179.97438 * 16 15 14 32 32 H 0.96708 * 113.99260 * 60.00445 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 1 0.5915 -4.8250 -0.5896 13 6 1.1533 -5.2956 1.4362 14 6 0.4234 -6.6402 1.4367 15 6 1.3283 -7.7120 0.8257 16 6 1.6803 -7.3234 -0.6116 17 6 2.4103 -5.9789 -0.6122 18 1 2.6607 -5.7017 -1.6362 19 8 3.6084 -6.0869 0.1592 20 1 -0.4849 0.8400 0.0004 21 1 0.6248 -2.5571 0.8897 22 1 0.6240 -2.5567 -0.8903 23 1 2.8400 -3.5483 -0.7835 24 1 2.0671 -5.3776 2.0246 25 1 0.5083 -4.5323 1.8713 26 1 -0.4906 -6.5579 0.8484 27 1 0.1729 -6.9173 2.4608 28 1 0.8084 -8.6701 0.8264 29 1 2.2421 -7.7945 1.4141 30 1 0.7664 -7.2410 -1.1999 31 1 2.3254 -8.0868 -1.0467 32 1 4.2305 -6.7494 -0.1714 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052013542.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:06 Heat of formation + Delta-G solvation = -71.309384 kcal Electronic energy + Delta-G solvation = -13149.700379 eV Core-core repulsion = 10916.114204 eV Total energy + Delta-G solvation = -2233.586176 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.02052 -35.02000 -34.28718 -32.27628 -29.76675 -28.65266 -25.64004 -22.61924 -21.88200 -20.72188 -19.35140 -16.57842 -16.45863 -15.39209 -14.81203 -14.45624 -14.05100 -13.86311 -13.00869 -12.68644 -12.36742 -12.18436 -11.84860 -11.46571 -11.26349 -10.94258 -10.76805 -10.63802 -10.51763 -10.23778 -10.01037 -9.51251 -9.47004 -9.06254 -8.43691 -7.15190 -5.98815 -4.00023 3.34001 3.40990 3.46990 4.46314 4.51534 4.89715 4.91911 5.06983 5.36997 5.40161 5.46980 5.62932 5.66655 5.80030 5.82925 5.93016 6.09625 6.20980 6.37139 6.40125 6.52141 6.74370 6.97368 7.34341 7.47999 7.85420 7.95895 8.20649 8.51110 8.71439 9.10484 9.64759 11.12446 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.063711 B = 0.007698 C = 0.007254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.377693 B = 3636.566380 C = 3858.902678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.678 5.678 11 C 0.097 3.903 12 H 0.042 0.958 13 C -0.102 4.102 14 C -0.119 4.119 15 C -0.112 4.112 16 C -0.150 4.150 17 C 0.105 3.895 18 H 0.047 0.953 19 O -0.543 6.543 20 H 0.260 0.740 21 H 0.028 0.972 22 H -0.017 1.017 23 H 0.328 0.672 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.589 -14.196 -1.048 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.308 5.308 11 C -0.014 4.014 12 H 0.060 0.940 13 C -0.140 4.140 14 C -0.158 4.158 15 C -0.150 4.150 16 C -0.188 4.188 17 C 0.046 3.954 18 H 0.065 0.935 19 O -0.347 6.347 20 H 0.070 0.930 21 H 0.046 0.954 22 H 0.001 0.999 23 H 0.146 0.854 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.220 -13.567 -0.012 13.748 hybrid contribution 0.181 0.471 -1.336 1.428 sum 2.401 -13.096 -1.348 13.383 Atomic orbital electron populations 1.69977 1.06072 1.26575 1.51286 1.24999 0.94878 0.99359 0.95459 0.86432 0.80112 0.83369 0.77445 1.19647 1.21148 1.21014 1.21259 0.93606 0.90275 1.49806 0.91898 1.19623 0.90627 0.87580 0.95554 1.60560 1.20707 1.00495 1.49072 1.21467 0.93991 0.89749 0.96191 0.94047 1.21418 1.00535 0.95062 0.96991 1.21562 0.98257 0.95716 1.00221 1.21421 1.00104 0.97715 0.95722 1.22242 1.01045 0.97594 0.97967 1.21984 0.85567 0.94346 0.93515 0.93531 1.86720 1.29780 1.62254 1.55906 0.93047 0.95372 0.99917 0.85449 0.90839 0.92029 0.92596 0.92294 0.92818 0.91412 0.91360 0.92172 0.79243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.51 -15.00 9.32 -34.44 -0.32 -15.32 16 8 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.19 5.25 5.24 -4.97 -0.03 5.23 16 10 N -0.68 -15.46 6.16 -107.98 -0.67 -16.13 16 11 C 0.10 1.81 2.27 -67.71 -0.15 1.66 16 12 H 0.04 0.81 7.80 -51.93 -0.40 0.41 16 13 C -0.10 -1.82 5.28 -26.73 -0.14 -1.97 16 14 C -0.12 -1.68 5.92 -26.73 -0.16 -1.83 16 15 C -0.11 -1.36 5.78 -26.73 -0.15 -1.52 16 16 C -0.15 -1.80 5.64 -26.74 -0.15 -1.95 16 17 C 0.11 1.56 3.09 -26.73 -0.08 1.48 16 18 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 19 O -0.54 -8.10 11.84 -35.23 -0.42 -8.52 16 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 21 H 0.03 0.82 7.44 -51.93 -0.39 0.44 16 22 H -0.02 -0.48 8.06 -51.93 -0.42 -0.90 16 23 H 0.33 7.26 8.34 -39.29 -0.33 6.93 16 24 H 0.07 1.40 7.68 -51.93 -0.40 1.00 16 25 H 0.06 1.22 7.45 -51.93 -0.39 0.83 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.36 3.64 9.08 45.56 0.41 4.05 16 LS Contribution 258.63 15.07 3.90 3.90 Total: -1.00 -31.79 258.63 -7.14 -38.94 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.39 Total: 4.08 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -1.29 Total: -12.72 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.07 Total: -42.86 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.42 Total: -8.52 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.79 -7.14 -38.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052013542.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.374 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds