Wall clock time and date at job start Mon Mar 30 2020 01:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48501 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47264 * 300.00448 * 3 2 1 6 6 H 1.48500 * 109.46969 * 60.00053 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46577 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99800 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46881 * 35.00094 * 11 10 9 13 13 C 1.53006 * 109.47010 * 275.00400 * 11 10 9 14 14 C 1.52995 * 109.46709 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47350 * 59.99805 * 14 13 11 16 16 C 1.52996 * 109.47011 * 299.99740 * 15 14 13 17 17 C 1.52995 * 109.47260 * 60.00311 * 16 15 14 18 18 H 1.08998 * 109.47465 * 180.02562 * 17 16 15 19 19 O 1.42901 * 109.47449 * 59.99342 * 17 16 15 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 22 22 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 23 23 H 1.00896 * 111.00594 * 303.95433 * 10 9 7 24 24 H 1.08998 * 109.47049 * 299.99591 * 13 11 10 25 25 H 1.08993 * 109.47294 * 59.99657 * 13 11 10 26 26 H 1.09001 * 109.47551 * 299.99611 * 14 13 11 27 27 H 1.09009 * 109.46855 * 179.97438 * 14 13 11 28 28 H 1.09001 * 109.47100 * 179.97438 * 15 14 13 29 29 H 1.09003 * 109.46873 * 60.00214 * 15 14 13 30 30 H 1.09001 * 109.47016 * 299.99659 * 16 15 14 31 31 H 1.09002 * 109.46819 * 179.97438 * 16 15 14 32 32 H 0.96708 * 113.99260 * 60.00445 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 1 0.5915 -4.8250 -0.5896 13 6 1.1533 -5.2956 1.4362 14 6 0.4234 -6.6402 1.4367 15 6 1.3283 -7.7120 0.8257 16 6 1.6803 -7.3234 -0.6116 17 6 2.4103 -5.9789 -0.6122 18 1 2.6607 -5.7017 -1.6362 19 8 3.6084 -6.0869 0.1592 20 1 -0.4849 0.8400 0.0004 21 1 0.6248 -2.5571 0.8897 22 1 0.6240 -2.5567 -0.8903 23 1 2.8400 -3.5483 -0.7835 24 1 2.0671 -5.3776 2.0246 25 1 0.5083 -4.5323 1.8713 26 1 -0.4906 -6.5579 0.8484 27 1 0.1729 -6.9173 2.4608 28 1 0.8084 -8.6701 0.8264 29 1 2.2421 -7.7945 1.4141 30 1 0.7664 -7.2410 -1.1999 31 1 2.3254 -8.0868 -1.0467 32 1 4.2305 -6.7494 -0.1714 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052013542.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:06 Heat of formation + Delta-G solvation = -95.991461 kcal Electronic energy + Delta-G solvation = -13150.770675 eV Core-core repulsion = 10916.114204 eV Total energy + Delta-G solvation = -2234.656471 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.29178 -36.61260 -35.71868 -34.34237 -30.97609 -30.31713 -27.57821 -24.29827 -23.28239 -22.27851 -20.65826 -18.62478 -17.69614 -16.80574 -16.70351 -16.00168 -15.46575 -15.26287 -14.65548 -14.37413 -13.82312 -13.68322 -13.46672 -12.98324 -12.82118 -12.63719 -12.47686 -12.11538 -12.06438 -11.81097 -11.43101 -11.28353 -10.86284 -10.68817 -10.57997 -9.07022 -8.24532 -6.36125 1.39115 1.40548 1.54827 2.38785 3.08149 3.31046 3.58181 3.81326 3.94368 4.12596 4.28900 4.36892 4.50829 4.55897 4.60223 4.87662 4.92303 5.03012 5.07775 5.19090 5.26767 5.30288 5.31898 5.40408 5.55823 5.64615 6.02795 6.47030 6.73572 6.89143 7.08073 7.35123 8.87433 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.063711 B = 0.007698 C = 0.007254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.377693 B = 3636.566380 C = 3858.902678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.211 3.789 10 N -0.680 5.680 11 C 0.087 3.913 12 H 0.030 0.970 13 C -0.098 4.098 14 C -0.116 4.116 15 C -0.108 4.108 16 C -0.143 4.143 17 C 0.112 3.888 18 H 0.053 0.947 19 O -0.563 6.563 20 H 0.266 0.734 21 H -0.003 1.003 22 H -0.042 1.042 23 H 0.332 0.668 24 H 0.060 0.940 25 H 0.026 0.974 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.656 -15.268 -1.495 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.083 3.917 10 N -0.311 5.311 11 C -0.023 4.023 12 H 0.048 0.952 13 C -0.136 4.136 14 C -0.154 4.154 15 C -0.145 4.145 16 C -0.182 4.182 17 C 0.053 3.947 18 H 0.071 0.929 19 O -0.370 6.370 20 H 0.074 0.926 21 H 0.015 0.985 22 H -0.025 1.025 23 H 0.150 0.850 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.303 -14.679 -0.466 15.053 hybrid contribution -0.162 0.768 -1.173 1.411 sum 3.141 -13.910 -1.639 14.354 Atomic orbital electron populations 1.70103 1.07833 1.27991 1.51537 1.25999 0.95852 1.03504 0.94469 0.85236 0.78828 0.78024 0.77895 1.18760 1.19963 1.20270 1.21588 0.93750 0.91545 1.50636 0.91970 1.19232 0.90573 0.89109 0.92792 1.60464 1.20138 1.01209 1.49253 1.21644 0.94477 0.89206 0.96996 0.95218 1.21358 0.99649 0.96649 0.95943 1.21547 0.98324 0.93978 1.01503 1.21414 0.99739 0.97898 0.95473 1.22212 1.01438 0.96302 0.98200 1.21815 0.85386 0.94560 0.92949 0.92924 1.86654 1.30299 1.63663 1.56401 0.92555 0.98505 1.02480 0.85046 0.92159 0.95472 0.92393 0.91045 0.90051 0.91543 0.91046 0.88859 0.76507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.98 45.71 29.54 68.60 2.03 47.73 16 4 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.54 -32.28 9.32 25.60 0.24 -32.04 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 9 C 0.21 12.04 5.24 85.56 0.45 12.49 16 10 N -0.68 -32.01 6.16 -495.54 -3.05 -35.07 16 11 C 0.09 3.31 2.27 44.92 0.10 3.42 16 12 H 0.03 1.21 7.80 -2.39 -0.02 1.19 16 13 C -0.10 -3.59 5.28 30.59 0.16 -3.43 16 14 C -0.12 -3.11 5.92 30.59 0.18 -2.93 16 15 C -0.11 -2.28 5.78 30.59 0.18 -2.10 16 16 C -0.14 -2.96 5.64 30.59 0.17 -2.79 16 17 C 0.11 3.16 3.09 30.59 0.09 3.25 16 18 H 0.05 1.42 8.12 -2.39 -0.02 1.40 16 19 O -0.56 -15.73 11.84 -148.98 -1.76 -17.50 16 20 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 21 H 0.00 -0.20 7.44 -2.39 -0.02 -0.21 16 22 H -0.04 -2.57 8.06 -2.39 -0.02 -2.59 16 23 H 0.33 14.96 8.34 -89.70 -0.75 14.21 16 24 H 0.06 2.34 7.68 -2.39 -0.02 2.32 16 25 H 0.03 1.14 7.45 -2.39 -0.02 1.12 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.46 7.68 -2.39 -0.02 1.44 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.39 6.61 9.08 -74.05 -0.67 5.94 16 Total: -1.00 -69.91 258.63 -0.79 -70.70 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -0.32 Total: 15.74 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 2.04 Total: -23.69 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -2.77 Total: -92.98 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -1.76 Total: -17.50 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -69.91 -0.79 -70.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052013542.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.294 kcal (2) G-P(sol) polarization free energy of solvation -69.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds