Wall clock time and date at job start Mon Mar 30 2020 02:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47234 * 2 1 4 4 H 1.09000 * 109.47269 * 303.44537 * 3 2 1 5 5 C 1.50698 * 109.47085 * 183.44117 * 3 2 1 6 6 H 1.08000 * 120.00178 * 240.00069 * 5 3 2 7 7 C 1.37876 * 119.99699 * 60.00261 * 5 3 2 8 8 N 1.31522 * 120.00278 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00042 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47331 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47446 * 300.00060 * 9 7 5 12 12 H 1.48495 * 109.47052 * 60.00140 * 9 7 5 13 13 N 1.46906 * 109.46714 * 63.44399 * 3 2 1 14 14 C 1.47902 * 110.99643 * 181.79098 * 13 3 2 15 15 C 1.53993 * 107.06073 * 214.15913 * 14 13 3 16 16 C 1.54596 * 105.13529 * 1.22075 * 15 14 13 17 17 H 1.09004 * 110.73036 * 263.60057 * 16 15 14 18 18 O 1.42911 * 110.72362 * 140.49672 * 16 15 14 19 19 C 1.48528 * 110.99898 * 64.39819 * 13 3 2 20 20 H 1.08997 * 109.46882 * 294.76109 * 1 2 3 21 21 H 1.09001 * 109.46723 * 54.76421 * 1 2 3 22 22 H 1.09001 * 109.47048 * 174.76189 * 1 2 3 23 23 H 1.08999 * 109.46680 * 239.99798 * 2 1 3 24 24 H 1.08999 * 109.46610 * 120.00549 * 2 1 3 25 25 H 0.96997 * 119.99914 * 180.02562 * 8 7 5 26 26 H 1.09013 * 109.91871 * 333.50894 * 14 13 3 27 27 H 1.08998 * 109.92206 * 94.80290 * 14 13 3 28 28 H 1.08999 * 110.31126 * 120.13726 * 15 14 13 29 29 H 1.09002 * 110.30612 * 242.21390 * 15 14 13 30 30 H 0.96699 * 113.99443 * 61.45155 * 18 16 15 31 31 H 1.09007 * 110.66736 * 278.14726 * 19 13 3 32 32 H 1.08998 * 110.66946 * 41.28257 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6272 1.9738 -0.8575 5 6 3.5446 1.4433 -0.0853 6 1 4.1299 1.8949 0.7020 7 6 4.1740 0.8675 -1.1685 8 7 3.4612 0.3180 -2.1276 9 14 6.0389 0.8691 -1.2747 10 1 6.4641 0.1942 -2.5273 11 1 6.5336 2.2692 -1.2750 12 1 6.6018 0.1455 -0.1064 13 7 1.6195 2.1105 1.2389 14 6 2.0590 3.5226 1.2552 15 6 2.3892 3.8762 2.7171 16 6 2.1403 2.5747 3.5133 17 1 1.1454 2.5791 3.9587 18 8 3.1411 2.3971 4.5180 19 6 2.2492 1.4768 2.4255 20 1 -0.3633 0.4304 0.9332 21 1 -0.3633 0.5929 -0.8394 22 1 -0.3633 -1.0234 -0.0938 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.9040 -0.0874 -2.8894 26 1 2.9471 3.6423 0.6345 27 1 1.2580 4.1651 0.8896 28 1 3.4320 4.1808 2.8064 29 1 1.7320 4.6701 3.0720 30 1 3.1631 3.1017 5.1799 31 1 1.6981 0.5845 2.7230 32 1 3.2932 1.2364 2.2247 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061708483.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:35 Heat of formation + Delta-G solvation = -73.772493 kcal Electronic energy + Delta-G solvation = -13600.139816 eV Core-core repulsion = 11366.446832 eV Total energy + Delta-G solvation = -2233.692984 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.22997 -37.43356 -35.20356 -33.49306 -30.71089 -29.33409 -27.89008 -24.92750 -22.68908 -21.78261 -20.87642 -18.43874 -18.19214 -17.14166 -16.37885 -15.88721 -14.99211 -14.82215 -14.56895 -14.30601 -13.98956 -13.34580 -13.18650 -13.04304 -12.72984 -12.51224 -12.31789 -12.22890 -11.96907 -11.59614 -11.39654 -11.33770 -10.98075 -10.82392 -10.45651 -9.06909 -8.06758 -6.27257 1.35946 1.37092 1.44454 2.38220 3.12464 3.16672 3.65170 3.86985 4.05776 4.20877 4.51985 4.56676 4.71100 4.81347 4.88313 4.93385 5.01000 5.09206 5.18363 5.23818 5.30086 5.42368 5.46528 5.59390 5.75636 6.00021 6.13765 6.32412 6.46839 6.90508 6.98795 7.42022 8.89684 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.029247 B = 0.014019 C = 0.010950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.147248 B = 1996.874017 C = 2556.523196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C 0.211 3.789 4 H 0.007 0.993 5 C -0.551 4.551 6 H 0.049 0.951 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.945 3.055 10 H -0.281 1.281 11 H -0.274 1.274 12 H -0.276 1.276 13 N -0.510 5.510 14 C 0.032 3.968 15 C -0.149 4.149 16 C 0.105 3.895 17 H 0.086 0.914 18 O -0.581 6.581 19 C 0.045 3.955 20 H 0.056 0.944 21 H 0.035 0.965 22 H 0.046 0.954 23 H 0.063 0.937 24 H 0.027 0.973 25 H 0.262 0.738 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.395 0.605 31 H 0.070 0.930 32 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 4.943 9.141 10.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.145 4.145 3 C 0.103 3.897 4 H 0.025 0.975 5 C -0.590 4.590 6 H 0.067 0.933 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.771 3.229 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.202 1.202 13 N -0.234 5.234 14 C -0.096 4.096 15 C -0.187 4.187 16 C 0.046 3.954 17 H 0.104 0.896 18 O -0.389 6.389 19 C -0.083 4.083 20 H 0.075 0.925 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.245 0.755 31 H 0.089 0.911 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.457 4.281 8.627 10.232 hybrid contribution 1.931 0.364 -0.375 2.001 sum -1.526 4.645 8.252 9.591 Atomic orbital electron populations 1.21566 0.95982 0.99796 1.00898 1.21423 0.94733 0.98011 1.00289 1.19197 0.91780 0.91685 0.87017 0.97460 1.21890 0.93875 1.37488 1.05756 0.93324 1.25600 1.01922 0.94908 0.95408 1.69988 1.36438 1.38379 1.10046 0.85814 0.81435 0.78272 0.77363 1.20597 1.19932 1.20187 1.65052 1.53367 1.01998 1.03002 1.22740 0.99056 0.91040 0.96763 1.23043 1.02268 0.98642 0.94743 1.22686 0.91180 0.93881 0.87656 0.89632 1.86482 1.58076 1.52599 1.41701 1.22948 0.98213 0.96960 0.90227 0.92463 0.94555 0.93504 0.91865 0.95437 0.92832 0.95105 0.90680 0.91441 0.88331 0.75486 0.91131 0.94759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.72 71.98 0.70 -4.36 16 2 C -0.11 -5.18 5.14 30.60 0.16 -5.02 16 3 C 0.21 10.74 1.79 44.17 0.08 10.82 16 4 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 5 C -0.55 -30.41 6.37 25.60 0.16 -30.25 16 6 H 0.05 2.73 6.02 -2.91 -0.02 2.71 16 7 C 0.02 1.21 5.30 84.65 0.45 1.66 16 8 N -0.91 -52.45 11.30 21.45 0.24 -52.21 16 9 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 N -0.51 -21.82 4.77 -862.21 -4.11 -25.94 16 14 C 0.03 1.24 6.35 86.45 0.55 1.79 16 15 C -0.15 -4.39 6.69 31.47 0.21 -4.18 16 16 C 0.11 3.26 4.43 31.80 0.14 3.40 16 17 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 18 O -0.58 -16.95 13.41 -148.98 -2.00 -18.95 16 19 C 0.04 1.83 5.08 86.65 0.44 2.27 16 20 H 0.06 2.16 7.86 -2.39 -0.02 2.15 16 21 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.06 3.47 5.99 -2.39 -0.01 3.45 16 24 H 0.03 1.32 6.89 -2.39 -0.02 1.31 16 25 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 26 H 0.03 1.37 6.42 -2.38 -0.02 1.35 16 27 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 29 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.40 6.97 9.11 -74.06 -0.67 6.30 16 31 H 0.07 2.81 7.60 -2.38 -0.02 2.79 16 32 H 0.03 1.64 5.93 -2.39 -0.01 1.63 16 Total: -1.00 -62.26 252.27 -0.53 -62.79 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.43 Total: 11.79 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 2.89 Total: -23.87 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -3.87 Total: -78.15 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -2.00 Total: -18.95 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -62.26 -0.53 -62.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061708483.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.983 kcal (2) G-P(sol) polarization free energy of solvation -62.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds