Wall clock time and date at job start Mon Mar 30 2020 02:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46902 * 109.47094 * 239.99725 * 2 1 3 5 5 C 1.47014 * 110.99483 * 66.05238 * 4 2 1 6 6 C 1.53101 * 109.25553 * 177.60778 * 5 4 2 7 7 O 1.43016 * 109.26251 * 56.84403 * 6 5 4 8 8 C 1.43017 * 113.73985 * 301.33304 * 7 6 5 9 9 H 1.08998 * 109.50400 * 298.69226 * 8 7 6 10 10 C 1.50693 * 109.51059 * 178.60057 * 8 7 6 11 11 H 1.07998 * 120.00233 * 240.00022 * 10 8 7 12 12 C 1.37880 * 119.99833 * 59.99688 * 10 8 7 13 13 N 1.31517 * 120.00005 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00105 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.46819 * 60.00072 * 14 12 10 16 16 H 1.48494 * 109.47195 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46828 * 300.00245 * 14 12 10 18 18 C 1.47014 * 111.00401 * 302.41352 * 4 2 1 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 1.09008 * 109.50665 * 297.53428 * 5 4 2 27 27 H 1.08994 * 109.51386 * 57.67335 * 5 4 2 28 28 H 1.09000 * 109.50446 * 176.77741 * 6 5 4 29 29 H 1.08994 * 109.51093 * 296.86448 * 6 5 4 30 30 H 0.97005 * 119.99938 * 179.97438 * 13 12 10 31 31 H 1.08993 * 109.50443 * 302.32907 * 18 4 2 32 32 H 1.09001 * 109.50466 * 62.45366 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 1.6700 0.0526 -2.4175 6 6 2.2493 -0.6712 -3.6359 7 8 1.7595 -2.0147 -3.6636 8 6 2.0827 -2.7695 -2.4926 9 1 3.1657 -2.8417 -2.3936 10 6 1.4945 -4.1522 -2.6070 11 1 0.7806 -4.4977 -1.8740 12 6 1.8679 -4.9763 -3.6474 13 7 2.7369 -4.5554 -4.5404 14 14 1.1383 -6.6900 -3.7897 15 1 -0.3373 -6.5903 -3.9228 16 1 1.6989 -7.3690 -4.9854 17 1 1.4739 -7.4733 -2.5734 18 6 1.5017 -2.0670 -1.2627 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 0.5854 0.1102 -2.5102 27 1 2.0851 1.0587 -2.3606 28 1 1.9443 -0.1539 -4.5456 29 1 3.3372 -0.6811 -3.5702 30 1 2.9998 -5.1353 -5.2722 31 1 1.7939 -2.6078 -0.3626 32 1 0.4145 -2.0431 -1.3368 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070834760.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:13 Heat of formation + Delta-G solvation = -43.485671 kcal Electronic energy + Delta-G solvation = -13558.827685 eV Core-core repulsion = 11326.448036 eV Total energy + Delta-G solvation = -2232.379649 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.90472 -35.75249 -32.68632 -31.07055 -30.10759 -27.13561 -26.37395 -24.14546 -22.50900 -20.39424 -18.70507 -16.70850 -15.51313 -14.99649 -14.56785 -14.38062 -14.02775 -13.64244 -13.41958 -12.97467 -12.54747 -11.91467 -11.78219 -11.54637 -11.14205 -11.03219 -10.88606 -10.72756 -10.43754 -10.34109 -9.92062 -9.60242 -8.91428 -8.51969 -8.08395 -7.55646 -5.99556 -4.12658 3.33775 3.38005 3.40293 4.36627 4.51762 5.10790 5.12509 5.30819 5.49631 5.59930 5.72087 5.78434 5.86590 5.86820 6.05289 6.05479 6.15160 6.29373 6.33874 6.44408 6.51987 6.62145 6.73811 6.79183 7.43184 7.69299 7.69735 7.92898 8.30104 8.77867 9.13493 9.57755 11.08489 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.057957 B = 0.009833 C = 0.008909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.000112 B = 2846.960728 C = 3142.170713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.072 3.928 3 C -0.145 4.145 4 N -0.533 5.533 5 C 0.018 3.982 6 C 0.058 3.942 7 O -0.362 6.362 8 C 0.224 3.776 9 H 0.022 0.978 10 C -0.531 4.531 11 H 0.063 0.937 12 C 0.079 3.921 13 N -0.860 5.860 14 Si 0.894 3.106 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.030 3.970 19 H 0.054 0.946 20 H 0.053 0.947 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.033 0.967 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.261 0.739 31 H 0.068 0.932 32 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.041 8.735 6.210 10.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.036 4.036 3 C -0.202 4.202 4 N -0.257 5.257 5 C -0.110 4.110 6 C -0.020 4.020 7 O -0.281 6.281 8 C 0.168 3.832 9 H 0.040 0.960 10 C -0.569 4.569 11 H 0.081 0.919 12 C -0.127 4.127 13 N -0.495 5.495 14 Si 0.721 3.279 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.097 4.097 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.080 0.920 22 H 0.096 0.904 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.518 8.583 5.918 10.535 hybrid contribution -1.185 -0.648 0.066 1.352 sum -2.703 7.935 5.984 10.299 Atomic orbital electron populations 1.22470 0.98157 1.02359 1.01490 1.21706 0.92463 0.94944 0.94516 1.21894 1.01685 0.95473 1.01171 1.62549 1.58867 1.03144 1.01174 1.22849 0.98525 0.97697 0.91957 1.22352 0.97656 0.87062 0.94951 1.88407 1.76993 1.19490 1.43172 1.19750 0.95210 0.88751 0.79496 0.95989 1.20901 1.27925 0.96059 1.11974 0.91907 1.25051 0.94256 0.98230 0.95212 1.70042 1.30453 1.36131 1.12906 0.86647 0.79616 0.84053 0.77558 1.20106 1.21127 1.20062 1.22989 0.97612 0.87238 1.01905 0.92686 0.92807 0.92040 0.90422 0.92826 0.92026 0.92619 0.94841 0.91102 0.91043 0.94183 0.92873 0.91367 0.94832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 8.48 37.16 0.32 -2.37 16 2 C 0.07 1.11 3.08 -67.72 -0.21 0.91 16 3 C -0.14 -1.84 8.76 37.15 0.33 -1.52 16 4 N -0.53 -10.21 4.77 -226.33 -1.08 -11.29 16 5 C 0.02 0.33 4.85 -3.71 -0.02 0.31 16 6 C 0.06 1.25 7.01 37.21 0.26 1.51 16 7 O -0.36 -9.82 9.86 -35.23 -0.35 -10.17 16 8 C 0.22 6.01 2.66 -27.84 -0.07 5.93 16 9 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 10 C -0.53 -15.21 8.80 -34.44 -0.30 -15.52 16 11 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 12 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 13 N -0.86 -25.88 12.84 55.43 0.71 -25.17 16 14 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.03 0.66 4.35 -3.71 -0.02 0.65 16 19 H 0.05 0.81 6.61 -51.93 -0.34 0.47 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 0.97 6.42 -51.93 -0.33 0.64 16 22 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.70 6.28 -51.93 -0.33 0.37 16 26 H 0.03 0.63 6.59 -51.92 -0.34 0.28 16 27 H 0.07 1.12 6.08 -51.93 -0.32 0.80 16 28 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.03 0.75 6.40 -51.93 -0.33 0.42 16 LS Contribution 251.29 15.07 3.79 3.79 Total: -1.00 -30.64 251.29 -6.68 -37.32 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -4.92 Total: -3.10 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 0.19 Total: -7.92 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.37 Total: -36.46 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.35 Total: -10.17 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.64 -6.68 -37.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070834760.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.165 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds