Wall clock time and date at job start Mon Mar 30 2020 02:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46902 * 109.47094 * 239.99725 * 2 1 3 5 5 C 1.47014 * 110.99483 * 66.05238 * 4 2 1 6 6 C 1.53101 * 109.25553 * 177.60778 * 5 4 2 7 7 O 1.43016 * 109.26251 * 56.84403 * 6 5 4 8 8 C 1.43017 * 113.73985 * 301.33304 * 7 6 5 9 9 H 1.08998 * 109.50400 * 298.69226 * 8 7 6 10 10 C 1.50693 * 109.51059 * 178.60057 * 8 7 6 11 11 H 1.07998 * 120.00233 * 240.00022 * 10 8 7 12 12 C 1.37880 * 119.99833 * 59.99688 * 10 8 7 13 13 N 1.31517 * 120.00005 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00105 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.46819 * 60.00072 * 14 12 10 16 16 H 1.48494 * 109.47195 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46828 * 300.00245 * 14 12 10 18 18 C 1.47014 * 111.00401 * 302.41352 * 4 2 1 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 1.09008 * 109.50665 * 297.53428 * 5 4 2 27 27 H 1.08994 * 109.51386 * 57.67335 * 5 4 2 28 28 H 1.09000 * 109.50446 * 176.77741 * 6 5 4 29 29 H 1.08994 * 109.51093 * 296.86448 * 6 5 4 30 30 H 0.97005 * 119.99938 * 179.97438 * 13 12 10 31 31 H 1.08993 * 109.50443 * 302.32907 * 18 4 2 32 32 H 1.09001 * 109.50466 * 62.45366 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 1.6700 0.0526 -2.4175 6 6 2.2493 -0.6712 -3.6359 7 8 1.7595 -2.0147 -3.6636 8 6 2.0827 -2.7695 -2.4926 9 1 3.1657 -2.8417 -2.3936 10 6 1.4945 -4.1522 -2.6070 11 1 0.7806 -4.4977 -1.8740 12 6 1.8679 -4.9763 -3.6474 13 7 2.7369 -4.5554 -4.5404 14 14 1.1383 -6.6900 -3.7897 15 1 -0.3373 -6.5903 -3.9228 16 1 1.6989 -7.3690 -4.9854 17 1 1.4739 -7.4733 -2.5734 18 6 1.5017 -2.0670 -1.2627 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 0.5854 0.1102 -2.5102 27 1 2.0851 1.0587 -2.3606 28 1 1.9443 -0.1539 -4.5456 29 1 3.3372 -0.6811 -3.5702 30 1 2.9998 -5.1353 -5.2722 31 1 1.7939 -2.6078 -0.3626 32 1 0.4145 -2.0431 -1.3368 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070834760.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:13 Heat of formation + Delta-G solvation = -65.538791 kcal Electronic energy + Delta-G solvation = -13559.783980 eV Core-core repulsion = 11326.448036 eV Total energy + Delta-G solvation = -2233.335944 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.52515 -37.44361 -34.80564 -32.58078 -31.90865 -28.52002 -27.97743 -25.99007 -24.22316 -22.06280 -20.25347 -18.74330 -17.17142 -16.73447 -16.48618 -15.96892 -15.61904 -15.26276 -14.99734 -14.66421 -13.82114 -13.77607 -13.03171 -12.98875 -12.77667 -12.76872 -12.50718 -12.26764 -12.01888 -11.83176 -11.74639 -11.39089 -10.94880 -10.61727 -9.98141 -9.14747 -8.16937 -6.38845 1.41037 1.44784 1.52480 2.39599 2.98236 3.05840 3.71789 3.95860 4.08116 4.25933 4.31535 4.39050 4.43062 4.54175 4.60713 4.73680 4.79407 4.89064 4.93462 4.98662 5.01856 5.09483 5.30658 5.33671 5.44634 5.70986 6.01072 6.24605 6.27336 6.63047 7.11893 7.37749 8.91909 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.057957 B = 0.009833 C = 0.008909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.000112 B = 2846.960728 C = 3142.170713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 C -0.138 4.138 4 N -0.545 5.545 5 C 0.028 3.972 6 C 0.048 3.952 7 O -0.398 6.398 8 C 0.223 3.777 9 H -0.019 1.019 10 C -0.557 4.557 11 H 0.067 0.933 12 C 0.023 3.977 13 N -0.899 5.899 14 Si 0.968 3.032 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.262 1.262 18 C 0.048 3.952 19 H 0.051 0.949 20 H 0.082 0.918 21 H 0.041 0.959 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.029 0.971 30 H 0.263 0.737 31 H 0.070 0.930 32 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 9.618 7.240 12.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.040 4.040 3 C -0.195 4.195 4 N -0.270 5.270 5 C -0.100 4.100 6 C -0.029 4.029 7 O -0.317 6.317 8 C 0.167 3.833 9 H -0.001 1.001 10 C -0.594 4.594 11 H 0.085 0.915 12 C -0.180 4.180 13 N -0.536 5.536 14 Si 0.791 3.209 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.187 1.187 18 C -0.080 4.080 19 H 0.070 0.930 20 H 0.101 0.899 21 H 0.060 0.940 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.123 0.877 28 H 0.112 0.888 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.470 9.488 6.969 12.028 hybrid contribution -0.844 -0.829 -0.245 1.209 sum -3.314 8.659 6.724 11.453 Atomic orbital electron populations 1.22406 0.97222 1.01505 1.02751 1.21884 0.93275 0.96298 0.92585 1.21854 1.01518 0.93449 1.02723 1.62503 1.59379 1.02114 1.02971 1.22767 0.98474 0.98538 0.90222 1.22636 0.97227 0.85200 0.97870 1.88287 1.77437 1.22242 1.43722 1.19570 0.92915 0.89347 0.81518 1.00087 1.21353 1.28082 0.97627 1.12361 0.91475 1.25999 0.94506 1.02756 0.94694 1.70186 1.31922 1.37870 1.13605 0.85491 0.78781 0.78571 0.78023 1.19447 1.20562 1.18702 1.22588 0.96831 0.89080 0.99518 0.92972 0.89948 0.93953 0.90181 0.90141 0.92284 0.92212 0.94758 0.87652 0.88790 0.95275 0.92799 0.91206 0.95306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.74 8.48 71.98 0.61 -4.13 16 2 C 0.07 1.91 3.08 44.91 0.14 2.05 16 3 C -0.14 -3.01 8.76 71.98 0.63 -2.38 16 4 N -0.54 -20.32 4.77 -869.99 -4.15 -24.47 16 5 C 0.03 0.98 4.85 86.32 0.42 1.40 16 6 C 0.05 2.07 7.01 72.02 0.50 2.58 16 7 O -0.40 -22.11 9.86 -148.98 -1.47 -23.58 16 8 C 0.22 12.33 2.66 29.88 0.08 12.41 16 9 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 10 C -0.56 -32.62 8.80 25.60 0.23 -32.40 16 11 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 12 C 0.02 1.35 5.40 84.66 0.46 1.80 16 13 N -0.90 -55.58 12.84 21.45 0.28 -55.31 16 14 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 17 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 18 C 0.05 2.14 4.35 86.31 0.38 2.51 16 19 H 0.05 1.40 6.61 -2.39 -0.02 1.38 16 20 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 21 H 0.04 1.27 6.42 -2.38 -0.02 1.25 16 22 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.26 6.28 -2.39 -0.01 1.24 16 26 H 0.03 1.22 6.59 -2.38 -0.02 1.20 16 27 H 0.11 3.00 6.08 -2.39 -0.01 2.99 16 28 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 31 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.03 1.30 6.40 -2.39 -0.02 1.29 16 Total: -1.00 -67.34 251.29 1.20 -66.13 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 1.08 Total: 6.71 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 3.44 Total: -16.16 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -3.88 Total: -79.77 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -1.47 Total: -23.58 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -67.34 1.20 -66.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070834760.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.596 kcal (2) G-P(sol) polarization free energy of solvation -67.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds