Wall clock time and date at job start Mon Mar 30 2020 02:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 N 1.46903 * 109.47160 * 119.99819 * 2 1 3 5 5 C 1.47013 * 111.00094 * 51.36577 * 4 2 1 6 6 C 1.53095 * 109.25902 * 182.38821 * 5 4 2 7 7 O 1.43007 * 109.26132 * 303.15231 * 6 5 4 8 8 C 1.43014 * 113.73809 * 58.66826 * 7 6 5 9 9 H 1.09005 * 109.54442 * 61.29179 * 8 7 6 10 10 C 1.50708 * 109.50582 * 181.39403 * 8 7 6 11 11 H 1.07991 * 119.99789 * 119.78777 * 10 8 7 12 12 C 1.37877 * 120.00008 * 299.78088 * 10 8 7 13 13 N 1.31514 * 120.00089 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 119.99938 * 0.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 C 1.47018 * 110.99970 * 174.99768 * 4 2 1 19 19 H 1.08995 * 109.47414 * 60.00225 * 1 2 3 20 20 H 1.09005 * 109.47096 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47100 * 299.99829 * 1 2 3 22 22 H 1.09002 * 109.47389 * 239.99712 * 2 1 3 23 23 H 1.09001 * 109.47601 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.46990 * 299.99918 * 3 2 1 25 25 H 1.09002 * 109.47082 * 59.99524 * 3 2 1 26 26 H 1.09002 * 109.50725 * 302.33005 * 5 4 2 27 27 H 1.09000 * 109.50784 * 62.41357 * 5 4 2 28 28 H 1.09002 * 109.50107 * 63.08914 * 6 5 4 29 29 H 1.09001 * 109.50668 * 183.17218 * 6 5 4 30 30 H 0.96997 * 119.99848 * 180.02562 * 13 12 10 31 31 H 1.09007 * 109.50278 * 57.67490 * 18 4 2 32 32 H 1.08998 * 109.50830 * 297.54548 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.3873 -2.0121 1.3410 6 6 1.8798 -2.6722 2.6316 7 8 3.3072 -2.7560 2.6037 8 6 3.9557 -1.4886 2.4674 9 1 3.7039 -0.8567 3.3191 10 6 5.4483 -1.6902 2.4143 11 1 6.0057 -1.3712 1.5461 12 6 6.1021 -2.2819 3.4742 13 7 7.4047 -2.4574 3.4281 14 14 5.1379 -2.8342 4.9757 15 1 5.0726 -1.7228 5.9585 16 1 5.8125 -4.0033 5.5948 17 1 3.7619 -3.2156 4.5677 18 6 3.4843 -0.8166 1.1751 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 0.3045 -1.8944 1.3826 27 1 1.6530 -2.6364 0.4879 28 1 1.5669 -2.0750 3.4881 29 1 1.4573 -3.6737 2.7123 30 1 7.8646 -2.8740 4.1736 31 1 3.9322 0.1740 1.0956 32 1 3.7842 -1.4220 0.3197 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070834763.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:14 Heat of formation + Delta-G solvation = -38.967426 kcal Electronic energy + Delta-G solvation = -13574.142570 eV Core-core repulsion = 11341.958847 eV Total energy + Delta-G solvation = -2232.183723 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.99285 -36.02383 -32.72949 -31.48713 -30.62479 -27.42298 -26.41155 -24.31324 -22.07980 -20.15204 -19.45018 -16.96155 -16.08843 -15.04150 -14.87658 -14.45197 -14.26005 -13.69452 -13.21016 -13.16722 -12.47255 -12.32463 -12.06499 -11.59406 -11.46591 -11.04446 -10.88090 -10.69937 -10.56446 -10.11023 -9.97445 -9.63952 -9.17209 -8.55610 -8.26977 -7.80484 -6.10217 -4.19057 3.41754 3.47984 3.70966 4.25028 4.55917 4.85802 5.10786 5.13832 5.42129 5.50694 5.58074 5.71079 5.76910 5.82030 5.90856 5.95169 6.01824 6.16856 6.20363 6.24947 6.37477 6.41462 6.45417 6.63396 7.03273 7.45356 7.52911 7.71936 8.42260 8.52441 8.91057 9.53784 10.99958 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.052089 B = 0.011164 C = 0.009812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.411255 B = 2507.506843 C = 2853.021416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 C -0.143 4.143 4 N -0.538 5.538 5 C 0.021 3.979 6 C 0.056 3.944 7 O -0.381 6.381 8 C 0.189 3.811 9 H 0.022 0.978 10 C -0.519 4.519 11 H 0.078 0.922 12 C 0.084 3.916 13 N -0.891 5.891 14 Si 0.877 3.123 15 H -0.286 1.286 16 H -0.293 1.293 17 H -0.226 1.226 18 C 0.040 3.960 19 H 0.054 0.946 20 H 0.055 0.945 21 H 0.062 0.938 22 H 0.035 0.965 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.266 0.734 31 H 0.078 0.922 32 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.137 3.576 -4.329 14.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.035 4.035 3 C -0.201 4.201 4 N -0.264 5.264 5 C -0.108 4.108 6 C -0.023 4.023 7 O -0.301 6.301 8 C 0.133 3.867 9 H 0.040 0.960 10 C -0.556 4.556 11 H 0.097 0.903 12 C -0.120 4.120 13 N -0.528 5.528 14 Si 0.704 3.296 15 H -0.213 1.213 16 H -0.220 1.220 17 H -0.149 1.149 18 C -0.087 4.087 19 H 0.073 0.927 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.053 0.947 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -13.016 3.627 -3.836 14.046 hybrid contribution -0.221 -0.580 -0.042 0.622 sum -13.237 3.047 -3.878 14.126 Atomic orbital electron populations 1.21928 0.94996 1.01693 1.01779 1.21599 0.94980 0.95354 0.91557 1.21835 1.01621 0.95169 1.01448 1.62370 1.07520 1.18756 1.37712 1.22793 0.99010 0.89983 0.98986 1.22379 0.85760 0.99042 0.95069 1.88483 1.14682 1.33554 1.93378 1.20210 0.92825 0.82008 0.91667 0.96045 1.20853 0.87772 1.41958 1.05040 0.90348 1.25021 0.94636 0.93409 0.98964 1.69928 1.08308 1.42330 1.32264 0.86942 0.83397 0.78011 0.81296 1.21258 1.21977 1.14853 1.22777 0.84958 1.00952 1.00054 0.92653 0.92649 0.91916 0.94717 0.92207 0.92828 0.91942 0.90662 0.94813 0.93952 0.90498 0.92474 0.90369 0.94826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.67 37.15 0.32 -1.43 16 2 C 0.07 1.08 2.68 -67.72 -0.18 0.90 16 3 C -0.14 -1.93 9.10 37.16 0.34 -1.59 16 4 N -0.54 -9.70 4.59 -226.33 -1.04 -10.74 16 5 C 0.02 0.35 5.11 -3.71 -0.02 0.33 16 6 C 0.06 1.06 6.93 37.21 0.26 1.32 16 7 O -0.38 -9.32 7.33 -35.23 -0.26 -9.58 16 8 C 0.19 4.70 2.14 -27.83 -0.06 4.64 16 9 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 10 C -0.52 -15.07 9.38 -34.44 -0.32 -15.39 16 11 H 0.08 2.41 7.99 -52.49 -0.42 1.99 16 12 C 0.08 2.50 5.47 -17.82 -0.10 2.40 16 13 N -0.89 -27.65 13.96 55.43 0.77 -26.87 16 14 Si 0.88 22.41 26.99 -169.99 -4.59 17.82 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 17 H -0.23 -5.58 5.26 56.52 0.30 -5.28 16 18 C 0.04 0.85 4.65 -3.71 -0.02 0.83 16 19 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 20 H 0.05 0.64 6.26 -51.93 -0.33 0.32 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.03 0.53 8.13 -51.93 -0.42 0.11 16 23 H 0.06 0.87 6.48 -51.93 -0.34 0.53 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 1.07 6.05 -51.93 -0.31 0.76 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.08 1.61 6.34 -51.92 -0.33 1.28 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 248.72 15.07 3.75 3.75 Total: -1.00 -31.11 248.72 -6.30 -37.41 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -5.16 Total: -3.82 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 0.22 Total: -7.98 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.27 Total: -37.61 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.26 Total: -9.58 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.59 Total: 17.82 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.11 -6.30 -37.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070834763.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.554 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds