Wall clock time and date at job start Mon Mar 30 2020 01:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00026 * 2 1 4 4 H 1.48495 * 109.47340 * 239.99630 * 3 2 1 5 5 H 1.48501 * 109.47240 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47399 * 119.99379 * 3 2 1 7 7 C 1.37876 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00313 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47069 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47140 * 180.02562 * 10 9 7 12 12 C 1.46904 * 110.99944 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46883 * 180.02562 * 12 11 10 14 14 H 1.09005 * 109.47475 * 304.99933 * 13 12 11 15 15 O 1.42896 * 109.47335 * 65.00332 * 13 12 11 16 16 C 1.53003 * 109.46999 * 185.00378 * 13 12 11 17 17 C 1.53001 * 117.51964 * 111.28362 * 16 13 12 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 13 19 19 H 0.97000 * 120.00145 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47238 * 60.00461 * 9 7 2 21 21 H 1.08994 * 109.47209 * 299.99992 * 9 7 2 22 22 H 1.08999 * 109.47089 * 60.00427 * 10 9 7 23 23 H 1.09003 * 109.47287 * 300.00350 * 10 9 7 24 24 H 1.00901 * 111.00295 * 303.95819 * 11 10 9 25 25 H 1.08998 * 109.46606 * 60.00081 * 12 11 10 26 26 H 1.08999 * 109.47300 * 300.00127 * 12 11 10 27 27 H 0.96696 * 114.00050 * 59.99711 * 15 13 12 28 28 H 1.09002 * 115.54973 * 325.58146 * 16 13 12 29 29 H 1.09001 * 117.49733 * 214.97413 * 17 16 13 30 30 H 1.08995 * 117.49577 * 359.97438 * 17 16 13 31 31 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 32 32 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 -0.0001 12 6 2.4353 -6.0759 -0.0007 13 6 1.6353 -7.3800 -0.0020 14 1 0.9425 -7.3822 0.8396 15 8 0.9013 -7.4874 -1.2233 16 6 2.5934 -8.5663 0.1232 17 6 2.5595 -9.3680 1.4259 18 6 1.9824 -9.9689 0.1426 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8902 22 1 2.8719 -3.6044 0.8905 23 1 2.8720 -3.6043 -0.8894 24 1 0.8741 -4.9846 0.7810 25 1 3.0633 -6.0353 0.8893 26 1 3.0633 -6.0345 -0.8907 27 1 1.4551 -7.4916 -2.0160 28 1 3.5589 -8.4446 -0.3679 29 1 3.5027 -9.7737 1.7918 30 1 1.8548 -9.0501 2.1942 31 1 0.8978 -10.0465 0.0666 32 1 2.5460 -10.7700 -0.3358 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070885063.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:08 Heat of formation + Delta-G solvation = -65.188360 kcal Electronic energy + Delta-G solvation = -12358.388738 eV Core-core repulsion = 10125.067990 eV Total energy + Delta-G solvation = -2233.320748 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.67703 -37.27941 -36.17823 -34.90784 -31.90890 -29.00404 -26.04174 -23.49665 -23.14574 -22.61892 -21.60123 -18.51972 -17.70062 -16.91337 -16.69338 -16.41520 -15.79006 -15.22766 -14.81498 -14.48092 -14.04421 -13.78561 -13.40331 -12.85708 -12.77972 -12.46840 -12.39055 -12.01160 -11.89134 -11.53948 -11.42623 -11.35249 -11.08368 -10.64627 -10.56657 -9.26338 -8.20477 -6.32909 1.40380 1.44104 1.52136 2.40485 2.78798 3.12689 3.19877 3.69213 3.77993 3.97059 4.11296 4.21468 4.36177 4.40337 4.56999 4.61008 4.73822 4.79765 4.97854 5.03712 5.05563 5.25304 5.30641 5.42779 5.65117 5.77095 6.11893 6.25919 6.48877 6.84218 6.94115 7.36629 8.91691 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.090657 B = 0.005199 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.782375 B = 5384.021241 C = 5514.387963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.694 5.694 12 C 0.033 3.967 13 C 0.147 3.853 14 H 0.085 0.915 15 O -0.566 6.566 16 C -0.197 4.197 17 C -0.172 4.172 18 C -0.163 4.163 19 H 0.264 0.736 20 H -0.008 1.008 21 H -0.010 1.010 22 H 0.019 0.981 23 H 0.058 0.942 24 H 0.336 0.664 25 H 0.040 0.960 26 H 0.076 0.924 27 H 0.384 0.616 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.949 -16.988 1.131 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.586 4.586 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.045 4.045 11 N -0.325 5.325 12 C -0.096 4.096 13 C 0.088 3.912 14 H 0.103 0.897 15 O -0.372 6.372 16 C -0.216 4.216 17 C -0.209 4.209 18 C -0.200 4.200 19 H 0.073 0.927 20 H 0.011 0.989 21 H 0.008 0.992 22 H 0.037 0.963 23 H 0.077 0.923 24 H 0.153 0.847 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.232 0.768 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.219 -16.899 0.853 18.027 hybrid contribution 0.864 1.086 0.569 1.500 sum 7.082 -15.812 1.423 17.384 Atomic orbital electron populations 1.70111 1.07939 1.27942 1.51272 1.26013 0.95772 1.03510 0.94502 0.85437 0.78205 0.77753 0.79245 1.19081 1.20770 1.19030 1.21590 0.93565 0.92211 1.51206 0.92017 1.18928 0.94350 0.92464 0.94956 1.21789 0.95531 0.88417 0.98718 1.60424 1.20162 1.01734 1.50159 1.22693 0.94769 0.90773 1.01381 1.21348 0.91860 0.90444 0.87590 0.89681 1.86562 1.38138 1.96303 1.16205 1.22972 1.01363 0.93033 1.04185 1.23048 1.03641 1.03311 0.90919 1.22886 1.00911 0.95071 1.01150 0.92693 0.98927 0.99169 0.96270 0.92330 0.84658 0.94140 0.90520 0.76783 0.86658 0.87299 0.88845 0.89287 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.68 5.23 29.85 0.16 1.84 16 10 C 0.08 3.65 5.62 86.31 0.49 4.14 16 11 N -0.69 -25.62 6.45 -513.87 -3.31 -28.94 16 12 C 0.03 0.92 5.31 86.30 0.46 1.38 16 13 C 0.15 3.53 3.34 30.59 0.10 3.64 16 14 H 0.09 2.17 7.90 -2.38 -0.02 2.15 16 15 O -0.57 -15.24 13.20 -148.98 -1.97 -17.21 16 16 C -0.20 -3.59 5.36 -10.79 -0.06 -3.65 16 17 C -0.17 -2.75 10.18 30.59 0.31 -2.44 16 18 C -0.16 -2.68 10.16 30.60 0.31 -2.37 16 19 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 20 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 21 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 22 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 24 H 0.34 12.32 8.73 -89.69 -0.78 11.54 16 25 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.38 7.91 9.04 -74.06 -0.67 7.24 16 28 H 0.12 1.88 8.11 -2.39 -0.02 1.86 16 29 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.53 8.05 -2.39 -0.02 1.51 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -67.02 274.73 -0.87 -67.89 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.36 Total: 18.03 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 2.46 Total: -28.67 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -3.03 Total: -86.73 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -1.97 Total: -17.21 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -67.02 -0.87 -67.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070885063.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.699 kcal (2) G-P(sol) polarization free energy of solvation -67.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds