Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99633 * 2 1 4 4 H 1.48499 * 109.47022 * 269.99849 * 3 2 1 5 5 H 1.48497 * 109.47267 * 30.00545 * 3 2 1 6 6 H 1.48503 * 109.46510 * 150.00412 * 3 2 1 7 7 C 1.37873 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99595 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00534 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47332 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47020 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.53008 * 109.46622 * 179.97438 * 12 11 10 14 14 H 1.08995 * 109.47152 * 60.00028 * 13 12 11 15 15 O 1.42902 * 109.47100 * 299.99975 * 13 12 11 16 16 C 1.53004 * 109.46689 * 180.02562 * 13 12 11 17 17 C 1.53004 * 117.49438 * 248.74728 * 16 13 12 18 18 C 1.53001 * 117.49567 * 180.08686 * 16 13 12 19 19 H 0.97001 * 120.00114 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.47766 * 59.99216 * 9 7 2 21 21 H 1.09008 * 109.46651 * 299.99865 * 9 7 2 22 22 H 1.09002 * 109.47142 * 59.99917 * 10 9 7 23 23 H 1.09000 * 109.46991 * 299.99661 * 10 9 7 24 24 H 1.00896 * 111.00309 * 56.04370 * 11 10 9 25 25 H 1.08990 * 109.47358 * 299.99539 * 12 11 10 26 26 H 1.09004 * 109.47457 * 60.00221 * 12 11 10 27 27 H 0.96703 * 114.00039 * 299.99952 * 15 13 12 28 28 H 1.08994 * 115.54938 * 34.41537 * 16 13 12 29 29 H 1.08997 * 117.50138 * 359.97438 * 17 16 13 30 30 H 1.08998 * 117.49910 * 145.02320 * 17 16 13 31 31 H 1.09002 * 117.50091 * 214.97612 * 18 16 13 32 32 H 1.09006 * 117.49876 * 359.97438 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 7 1.5108 -4.9343 -0.0033 12 6 2.4353 -6.0759 -0.0049 13 6 1.6352 -7.3800 -0.0047 14 1 1.0063 -7.4206 -0.8940 15 8 0.8132 -7.4344 1.1629 16 6 2.5981 -8.5691 -0.0058 17 6 2.6595 -9.4272 -1.2710 18 6 1.9880 -9.9722 -0.0078 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5564 -0.8918 21 1 0.6241 -2.5574 0.8881 22 1 2.8720 -3.6051 0.8873 23 1 2.8719 -3.6035 -0.8927 24 1 0.8741 -4.9839 -0.7844 25 1 3.0626 -6.0342 -0.8952 26 1 3.0640 -6.0356 0.8847 27 1 1.3072 -7.4027 1.9936 28 1 3.5248 -8.4240 0.5494 29 1 2.0136 -9.1450 -2.1024 30 1 3.6265 -9.8471 -1.5479 31 1 2.5135 -10.7503 0.5457 32 1 0.9006 -10.0481 -0.0080 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070885068.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = -41.505176 kcal Electronic energy + Delta-G solvation = -12361.078859 eV Core-core repulsion = 10128.785090 eV Total energy + Delta-G solvation = -2232.293768 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.69984 -35.95237 -34.94786 -32.85763 -30.15227 -27.48785 -24.18242 -22.54681 -22.10389 -21.09948 -20.29278 -16.67757 -16.28725 -15.81071 -15.52144 -14.52129 -14.44282 -13.95806 -13.41282 -13.10347 -12.48465 -12.06698 -11.90913 -11.70266 -11.02270 -10.95856 -10.91116 -10.66093 -10.56062 -10.30430 -10.01597 -9.83244 -9.27708 -9.10760 -8.33201 -7.76064 -5.97507 -4.00335 3.33242 3.39294 3.42701 3.56340 4.26753 4.48260 4.58167 4.75291 4.91901 4.93739 5.24938 5.35623 5.38264 5.45482 5.47007 5.71620 5.86589 5.91191 5.96392 6.18868 6.34666 6.42198 6.99725 7.49354 7.75058 7.79739 7.88306 8.00267 8.11600 8.45768 9.07053 9.63302 11.13950 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.092258 B = 0.005203 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.422774 B = 5379.726539 C = 5524.559437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.683 5.683 12 C 0.030 3.970 13 C 0.141 3.859 14 H 0.093 0.907 15 O -0.545 6.545 16 C -0.192 4.192 17 C -0.176 4.176 18 C -0.167 4.167 19 H 0.261 0.739 20 H 0.013 0.987 21 H 0.026 0.974 22 H 0.057 0.943 23 H 0.013 0.987 24 H 0.336 0.664 25 H 0.031 0.969 26 H 0.069 0.931 27 H 0.372 0.628 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.268 -16.552 -0.765 17.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.314 5.314 12 C -0.100 4.100 13 C 0.081 3.919 14 H 0.111 0.889 15 O -0.349 6.349 16 C -0.211 4.211 17 C -0.213 4.213 18 C -0.204 4.204 19 H 0.070 0.930 20 H 0.032 0.968 21 H 0.044 0.956 22 H 0.075 0.925 23 H 0.032 0.968 24 H 0.153 0.847 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.219 0.781 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.559 -16.458 -0.521 17.086 hybrid contribution 1.401 1.025 -0.591 1.833 sum 5.960 -15.433 -1.113 16.581 Atomic orbital electron populations 1.69980 1.06036 1.26581 1.50621 1.25007 0.94839 0.99208 0.95310 0.86583 0.79827 0.83468 0.78041 1.20715 1.21168 1.19899 1.21179 0.92953 0.91057 1.50913 0.92806 1.19068 0.94023 0.90374 0.97793 1.22174 0.96969 0.88633 0.98461 1.60507 1.19290 1.01668 1.49892 1.22603 0.95109 0.91648 1.00670 1.21439 0.90536 0.90461 0.89481 0.88934 1.86590 1.36331 1.96432 1.15559 1.23113 1.01813 0.93157 1.02972 1.22956 1.02549 1.03973 0.91845 1.22851 1.00811 0.95774 1.00956 0.92983 0.96823 0.95552 0.92480 0.96834 0.84660 0.95132 0.91253 0.78107 0.87737 0.88661 0.88843 0.88984 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.67 5.23 -27.89 -0.15 0.52 16 10 C 0.07 1.43 5.62 -3.82 -0.02 1.41 16 11 N -0.68 -12.66 6.37 -113.77 -0.72 -13.39 16 12 C 0.03 0.43 5.33 -3.82 -0.02 0.41 16 13 C 0.14 1.77 3.37 -26.72 -0.09 1.68 16 14 H 0.09 1.20 7.90 -51.93 -0.41 0.79 16 15 O -0.54 -7.61 13.11 -35.23 -0.46 -8.07 16 16 C -0.19 -1.95 5.36 -90.61 -0.49 -2.44 16 17 C -0.18 -1.60 10.18 -26.69 -0.27 -1.87 16 18 C -0.17 -1.55 10.16 -26.69 -0.27 -1.82 16 19 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 20 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 22 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.34 6.13 8.73 -39.29 -0.34 5.79 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.37 4.13 9.05 45.56 0.41 4.54 16 28 H 0.10 1.00 8.11 -51.93 -0.42 0.58 16 29 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 274.62 15.07 4.14 4.14 Total: -1.00 -31.40 274.62 -7.58 -38.97 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.53 Total: 4.05 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -1.72 Total: -15.95 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.01 Total: -40.03 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.46 Total: -8.07 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.40 -7.58 -38.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070885068.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.531 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds