Wall clock time and date at job start Mon Mar 30 2020 02:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46580 * 179.97438 * 9 7 2 11 11 C 1.47447 * 111.00281 * 69.87090 * 10 9 7 12 12 C 1.54322 * 107.23249 * 123.25155 * 11 10 9 13 13 C 1.55141 * 103.01688 * 22.28808 * 12 11 10 14 14 H 1.08999 * 110.99435 * 82.47325 * 13 12 11 15 15 C 1.52999 * 110.98901 * 206.24982 * 13 12 11 16 16 C 1.53003 * 109.47473 * 293.54857 * 15 13 12 17 17 O 1.42893 * 109.47329 * 179.97438 * 16 15 13 18 18 C 1.47846 * 110.99766 * 190.71323 * 10 9 7 19 19 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 21 21 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 22 22 H 1.08993 * 109.89048 * 242.65854 * 11 10 9 23 23 H 1.09003 * 109.88693 * 3.68939 * 11 10 9 24 24 H 1.09002 * 110.70237 * 140.66470 * 12 11 10 25 25 H 1.08997 * 110.71173 * 263.72869 * 12 11 10 26 26 H 1.09004 * 109.47184 * 53.54592 * 15 13 12 27 27 H 1.08997 * 109.47386 * 173.54183 * 15 13 12 28 28 H 1.09004 * 109.46699 * 300.00032 * 16 15 13 29 29 H 1.08997 * 109.46940 * 59.99640 * 16 15 13 30 30 H 0.96698 * 114.00505 * 179.97438 * 17 16 15 31 31 H 1.09006 * 110.37360 * 332.46504 * 18 10 9 32 32 H 1.08997 * 110.37516 * 94.80361 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2057 -3.6157 -0.0027 11 6 2.9092 -3.7106 1.2897 12 6 2.6622 -5.1306 1.8413 13 6 2.3085 -5.9435 0.5682 14 1 3.2101 -6.2587 0.0431 15 6 1.4295 -7.1473 0.9133 16 6 2.2321 -8.1398 1.7570 17 8 1.4110 -9.2638 2.0797 18 6 1.5192 -4.8995 -0.2604 19 1 -0.4850 -0.8401 -0.0004 20 1 0.6241 -2.5574 0.8881 21 1 0.6247 -2.5564 -0.8919 22 1 3.9772 -3.5503 1.1431 23 1 2.5143 -2.9673 1.9823 24 1 3.5638 -5.5236 2.3113 25 1 1.8304 -5.1312 2.5457 26 1 0.5590 -6.8119 1.4771 27 1 1.1019 -7.6333 -0.0057 28 1 3.1026 -8.4752 1.1931 29 1 2.5597 -7.6537 2.6759 30 1 1.8561 -9.9355 2.6144 31 1 0.4840 -4.8508 0.0776 32 1 1.5616 -5.1462 -1.3213 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075557018.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:40 Heat of formation + Delta-G solvation = -90.995206 kcal Electronic energy + Delta-G solvation = -12850.152872 eV Core-core repulsion = 10615.713055 eV Total energy + Delta-G solvation = -2234.439817 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.19457 -37.86411 -35.74845 -33.92709 -30.89958 -29.39648 -27.28473 -24.65601 -23.67548 -21.76823 -21.10592 -18.83326 -18.22690 -17.24770 -16.53134 -16.07015 -15.63811 -15.16889 -14.62340 -14.51563 -14.30961 -14.05461 -13.27496 -13.03821 -12.83588 -12.57000 -12.48377 -12.04196 -11.94163 -11.87268 -11.57245 -11.57186 -10.85324 -10.79778 -10.60975 -9.15791 -8.71683 -6.42999 1.52223 1.61331 1.81233 2.54689 3.09386 3.11429 3.33024 3.69858 3.77024 3.99858 4.17688 4.33941 4.34947 4.51821 4.53836 4.63259 4.73878 4.78352 4.80695 4.92370 4.93175 5.00234 5.16485 5.18444 5.38120 5.76140 5.95792 6.30068 6.36160 6.58968 6.91593 7.38496 8.66465 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.086844 B = 0.006531 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.339198 B = 4286.402716 C = 4414.202801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.039 4.039 3 Si 1.124 2.876 4 H -0.282 1.282 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.601 4.601 8 H 0.054 0.946 9 C 0.191 3.809 10 N -0.538 5.538 11 C 0.049 3.951 12 C -0.127 4.127 13 C -0.077 4.077 14 H 0.100 0.900 15 C -0.106 4.106 16 C 0.080 3.920 17 O -0.598 6.598 18 C 0.039 3.961 19 H 0.251 0.749 20 H -0.043 1.043 21 H -0.006 1.006 22 H 0.072 0.928 23 H 0.028 0.972 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.398 0.602 31 H 0.024 0.976 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.147 -14.839 4.468 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.236 4.236 3 Si 0.944 3.056 4 H -0.207 1.207 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.639 4.639 8 H 0.072 0.928 9 C 0.064 3.936 10 N -0.262 5.262 11 C -0.078 4.078 12 C -0.165 4.165 13 C -0.096 4.096 14 H 0.118 0.882 15 C -0.144 4.144 16 C 0.003 3.997 17 O -0.407 6.407 18 C -0.089 4.089 19 H 0.060 0.940 20 H -0.026 1.026 21 H 0.012 0.988 22 H 0.090 0.910 23 H 0.047 0.953 24 H 0.121 0.879 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.248 0.752 31 H 0.042 0.958 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.881 -12.769 3.726 14.976 hybrid contribution -0.585 -1.873 0.788 2.115 sum 6.296 -14.642 4.514 16.565 Atomic orbital electron populations 1.70936 1.07967 1.29498 1.49058 1.27531 0.96508 1.06882 0.92631 0.82855 0.74009 0.70623 0.78088 1.20744 1.19281 1.19402 1.22292 0.94862 0.92220 1.54501 0.92810 1.19691 0.90772 0.90841 0.92303 1.63494 1.27934 1.02840 1.31923 1.22689 0.99205 0.96725 0.89225 1.22871 1.02620 0.93791 0.97245 1.22139 0.98784 0.93216 0.95470 0.88156 1.21389 0.98149 0.94420 1.00414 1.22161 0.92712 0.86417 0.98451 1.86419 1.44163 1.33983 1.76123 1.23154 0.95732 0.89369 1.00612 0.93952 1.02596 0.98823 0.90954 0.95313 0.87925 0.92200 0.92914 0.91083 0.91804 0.92574 0.75190 0.95756 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.66 13.65 21.45 0.29 -59.37 16 2 C -0.04 -2.30 5.46 84.66 0.46 -1.84 16 3 Si 1.12 51.36 29.90 68.60 2.05 53.41 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.60 -35.80 8.66 25.60 0.22 -35.58 16 8 H 0.05 3.17 7.78 -2.91 -0.02 3.14 16 9 C 0.19 10.69 3.61 85.56 0.31 11.00 16 10 N -0.54 -24.60 5.15 -890.08 -4.58 -29.19 16 11 C 0.05 1.95 6.39 86.65 0.55 2.50 16 12 C -0.13 -3.63 5.58 31.78 0.18 -3.45 16 13 C -0.08 -2.10 3.07 -9.41 -0.03 -2.13 16 14 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 15 C -0.11 -2.53 5.10 30.60 0.16 -2.37 16 16 C 0.08 1.48 6.90 71.98 0.50 1.98 16 17 O -0.60 -11.65 13.66 -148.98 -2.03 -13.68 16 18 C 0.04 1.45 6.15 86.77 0.53 1.99 16 19 H 0.25 16.31 7.22 -92.71 -0.67 15.64 16 20 H -0.04 -2.59 7.83 -2.39 -0.02 -2.61 16 21 H -0.01 -0.37 7.94 -2.39 -0.02 -0.39 16 22 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 23 H 0.03 1.29 7.31 -2.39 -0.02 1.27 16 24 H 0.10 2.23 8.13 -2.39 -0.02 2.21 16 25 H 0.06 1.76 8.02 -2.39 -0.02 1.74 16 26 H 0.05 1.43 8.11 -2.38 -0.02 1.41 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.06 0.94 7.50 -2.39 -0.02 0.92 16 30 H 0.40 3.66 9.12 -74.06 -0.68 2.98 16 31 H 0.02 0.95 7.71 -2.38 -0.02 0.94 16 32 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -71.64 261.98 -0.88 -72.52 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 0.51 Total: 4.21 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 2.88 Total: -27.91 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -4.29 Total: -88.55 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -2.03 Total: -13.68 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.05 Total: 53.41 kcal Total: -71.64 -0.88 -72.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075557018.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.474 kcal (2) G-P(sol) polarization free energy of solvation -71.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds