Wall clock time and date at job start Mon Mar 30 2020 02:02:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86800 * 120.00238 * 2 1
4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1
5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1
6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1
7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1
9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1
10 10 N 1.46902 * 109.46580 * 179.97438 * 9 7 2
11 11 C 1.47447 * 111.00281 * 69.87090 * 10 9 7
12 12 C 1.54322 * 107.23249 * 123.25155 * 11 10 9
13 13 C 1.55141 * 103.01688 * 22.28808 * 12 11 10
14 14 H 1.08999 * 110.99435 * 82.47325 * 13 12 11
15 15 C 1.52999 * 110.98901 * 206.24982 * 13 12 11
16 16 C 1.53003 * 109.47473 * 293.54857 * 15 13 12
17 17 O 1.42893 * 109.47329 * 179.97438 * 16 15 13
18 18 C 1.47846 * 110.99766 * 190.71323 * 10 9 7
19 19 H 0.97000 * 119.99706 * 179.97438 * 1 2 3
20 20 H 1.09000 * 109.46830 * 299.99601 * 9 7 2
21 21 H 1.08992 * 109.47799 * 59.99946 * 9 7 2
22 22 H 1.08993 * 109.89048 * 242.65854 * 11 10 9
23 23 H 1.09003 * 109.88693 * 3.68939 * 11 10 9
24 24 H 1.09002 * 110.70237 * 140.66470 * 12 11 10
25 25 H 1.08997 * 110.71173 * 263.72869 * 12 11 10
26 26 H 1.09004 * 109.47184 * 53.54592 * 15 13 12
27 27 H 1.08997 * 109.47386 * 173.54183 * 15 13 12
28 28 H 1.09004 * 109.46699 * 300.00032 * 16 15 13
29 29 H 1.08997 * 109.46940 * 59.99640 * 16 15 13
30 30 H 0.96698 * 114.00505 * 179.97438 * 17 16 15
31 31 H 1.09006 * 110.37360 * 332.46504 * 18 10 9
32 32 H 1.08997 * 110.37516 * 94.80361 * 18 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 1.2842 2.7464 0.0006
5 1 3.1030 1.6964 1.2125
6 1 3.1029 1.6964 -1.2125
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2510 -2.4991 -0.0017
10 7 2.2057 -3.6157 -0.0027
11 6 2.9092 -3.7106 1.2897
12 6 2.6622 -5.1306 1.8413
13 6 2.3085 -5.9435 0.5682
14 1 3.2101 -6.2587 0.0431
15 6 1.4295 -7.1473 0.9133
16 6 2.2321 -8.1398 1.7570
17 8 1.4110 -9.2638 2.0797
18 6 1.5192 -4.8995 -0.2604
19 1 -0.4850 -0.8401 -0.0004
20 1 0.6241 -2.5574 0.8881
21 1 0.6247 -2.5564 -0.8919
22 1 3.9772 -3.5503 1.1431
23 1 2.5143 -2.9673 1.9823
24 1 3.5638 -5.5236 2.3113
25 1 1.8304 -5.1312 2.5457
26 1 0.5590 -6.8119 1.4771
27 1 1.1019 -7.6333 -0.0057
28 1 3.1026 -8.4752 1.1931
29 1 2.5597 -7.6537 2.6759
30 1 1.8561 -9.9355 2.6144
31 1 0.4840 -4.8508 0.0776
32 1 1.5616 -5.1462 -1.3213
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000075557018.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:02:40
Heat of formation + Delta-G solvation = -90.995206 kcal
Electronic energy + Delta-G solvation = -12850.152872 eV
Core-core repulsion = 10615.713055 eV
Total energy + Delta-G solvation = -2234.439817 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-40.19457 -37.86411 -35.74845 -33.92709 -30.89958 -29.39648 -27.28473 -24.65601
-23.67548 -21.76823 -21.10592 -18.83326 -18.22690 -17.24770 -16.53134 -16.07015
-15.63811 -15.16889 -14.62340 -14.51563 -14.30961 -14.05461 -13.27496 -13.03821
-12.83588 -12.57000 -12.48377 -12.04196 -11.94163 -11.87268 -11.57245 -11.57186
-10.85324 -10.79778 -10.60975 -9.15791 -8.71683 -6.42999 1.52223 1.61331
1.81233 2.54689 3.09386 3.11429 3.33024 3.69858 3.77024 3.99858
4.17688 4.33941 4.34947 4.51821 4.53836 4.63259 4.73878 4.78352
4.80695 4.92370 4.93175 5.00234 5.16485 5.18444 5.38120 5.76140
5.95792 6.30068 6.36160 6.58968 6.91593 7.38496 8.66465
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.086844 B = 0.006531 C = 0.006342
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 322.339198 B = 4286.402716 C = 4414.202801
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.937 5.937
2 C -0.039 4.039
3 Si 1.124 2.876
4 H -0.282 1.282
5 H -0.268 1.268
6 H -0.269 1.269
7 C -0.601 4.601
8 H 0.054 0.946
9 C 0.191 3.809
10 N -0.538 5.538
11 C 0.049 3.951
12 C -0.127 4.127
13 C -0.077 4.077
14 H 0.100 0.900
15 C -0.106 4.106
16 C 0.080 3.920
17 O -0.598 6.598
18 C 0.039 3.961
19 H 0.251 0.749
20 H -0.043 1.043
21 H -0.006 1.006
22 H 0.072 0.928
23 H 0.028 0.972
24 H 0.102 0.898
25 H 0.059 0.941
26 H 0.052 0.948
27 H 0.070 0.930
28 H 0.064 0.936
29 H 0.056 0.944
30 H 0.398 0.602
31 H 0.024 0.976
32 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.147 -14.839 4.468 17.066
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.236 4.236
3 Si 0.944 3.056
4 H -0.207 1.207
5 H -0.193 1.193
6 H -0.194 1.194
7 C -0.639 4.639
8 H 0.072 0.928
9 C 0.064 3.936
10 N -0.262 5.262
11 C -0.078 4.078
12 C -0.165 4.165
13 C -0.096 4.096
14 H 0.118 0.882
15 C -0.144 4.144
16 C 0.003 3.997
17 O -0.407 6.407
18 C -0.089 4.089
19 H 0.060 0.940
20 H -0.026 1.026
21 H 0.012 0.988
22 H 0.090 0.910
23 H 0.047 0.953
24 H 0.121 0.879
25 H 0.078 0.922
26 H 0.071 0.929
27 H 0.089 0.911
28 H 0.082 0.918
29 H 0.074 0.926
30 H 0.248 0.752
31 H 0.042 0.958
32 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 6.881 -12.769 3.726 14.976
hybrid contribution -0.585 -1.873 0.788 2.115
sum 6.296 -14.642 4.514 16.565
Atomic orbital electron populations
1.70936 1.07967 1.29498 1.49058 1.27531 0.96508 1.06882 0.92631
0.82855 0.74009 0.70623 0.78088 1.20744 1.19281 1.19402 1.22292
0.94862 0.92220 1.54501 0.92810 1.19691 0.90772 0.90841 0.92303
1.63494 1.27934 1.02840 1.31923 1.22689 0.99205 0.96725 0.89225
1.22871 1.02620 0.93791 0.97245 1.22139 0.98784 0.93216 0.95470
0.88156 1.21389 0.98149 0.94420 1.00414 1.22161 0.92712 0.86417
0.98451 1.86419 1.44163 1.33983 1.76123 1.23154 0.95732 0.89369
1.00612 0.93952 1.02596 0.98823 0.90954 0.95313 0.87925 0.92200
0.92914 0.91083 0.91804 0.92574 0.75190 0.95756 0.90614
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -59.66 13.65 21.45 0.29 -59.37 16
2 C -0.04 -2.30 5.46 84.66 0.46 -1.84 16
3 Si 1.12 51.36 29.90 68.60 2.05 53.41 16
4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16
5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16
6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16
7 C -0.60 -35.80 8.66 25.60 0.22 -35.58 16
8 H 0.05 3.17 7.78 -2.91 -0.02 3.14 16
9 C 0.19 10.69 3.61 85.56 0.31 11.00 16
10 N -0.54 -24.60 5.15 -890.08 -4.58 -29.19 16
11 C 0.05 1.95 6.39 86.65 0.55 2.50 16
12 C -0.13 -3.63 5.58 31.78 0.18 -3.45 16
13 C -0.08 -2.10 3.07 -9.41 -0.03 -2.13 16
14 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16
15 C -0.11 -2.53 5.10 30.60 0.16 -2.37 16
16 C 0.08 1.48 6.90 71.98 0.50 1.98 16
17 O -0.60 -11.65 13.66 -148.98 -2.03 -13.68 16
18 C 0.04 1.45 6.15 86.77 0.53 1.99 16
19 H 0.25 16.31 7.22 -92.71 -0.67 15.64 16
20 H -0.04 -2.59 7.83 -2.39 -0.02 -2.61 16
21 H -0.01 -0.37 7.94 -2.39 -0.02 -0.39 16
22 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16
23 H 0.03 1.29 7.31 -2.39 -0.02 1.27 16
24 H 0.10 2.23 8.13 -2.39 -0.02 2.21 16
25 H 0.06 1.76 8.02 -2.39 -0.02 1.74 16
26 H 0.05 1.43 8.11 -2.38 -0.02 1.41 16
27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16
28 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16
29 H 0.06 0.94 7.50 -2.39 -0.02 0.92 16
30 H 0.40 3.66 9.12 -74.06 -0.68 2.98 16
31 H 0.02 0.95 7.71 -2.38 -0.02 0.94 16
32 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16
Total: -1.00 -71.64 261.98 -0.88 -72.52
By element:
Atomic # 1 Polarization: 3.70 SS G_CDS: 0.51 Total: 4.21 kcal
Atomic # 6 Polarization: -30.79 SS G_CDS: 2.88 Total: -27.91 kcal
Atomic # 7 Polarization: -84.26 SS G_CDS: -4.29 Total: -88.55 kcal
Atomic # 8 Polarization: -11.65 SS G_CDS: -2.03 Total: -13.68 kcal
Atomic # 14 Polarization: 51.36 SS G_CDS: 2.05 Total: 53.41 kcal
Total: -71.64 -0.88 -72.52 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000075557018.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.474 kcal
(2) G-P(sol) polarization free energy of solvation -71.637 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.111 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.522 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.995 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds