Wall clock time and date at job start Mon Mar 30 2020 01:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99547 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47100 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47057 * 55.00305 * 11 10 9 13 13 C 1.52995 * 109.47341 * 295.00378 * 11 10 9 14 14 C 1.52997 * 109.47439 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46925 * 59.99845 * 14 13 11 16 16 C 1.53002 * 109.47185 * 300.00033 * 15 14 13 17 17 C 1.52994 * 109.47281 * 174.99979 * 11 10 9 18 18 H 1.08998 * 109.47088 * 60.00036 * 17 11 10 19 19 O 1.42897 * 109.47342 * 300.00161 * 17 11 10 20 20 H 0.96993 * 120.00007 * 179.97438 * 1 2 3 21 21 H 0.96998 * 120.00268 * 0.02562 * 9 7 2 22 22 H 1.08994 * 109.47239 * 300.00354 * 10 9 7 23 23 H 1.08999 * 109.47211 * 60.00448 * 10 9 7 24 24 H 1.09003 * 109.47410 * 299.99676 * 13 11 10 25 25 H 1.09004 * 109.47525 * 59.99772 * 13 11 10 26 26 H 1.09006 * 109.47306 * 300.00139 * 14 13 11 27 27 H 1.09000 * 109.47878 * 180.02562 * 14 13 11 28 28 H 1.09005 * 109.47134 * 179.97438 * 15 14 13 29 29 H 1.08995 * 109.47196 * 60.00438 * 15 14 13 30 30 H 1.08998 * 109.46959 * 299.99995 * 16 15 14 31 31 H 1.09001 * 109.46791 * 179.97438 * 16 15 14 32 32 H 0.96700 * 114.00217 * 179.97438 * 19 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0008 12 1 0.3787 -4.7126 -0.8419 13 6 0.2705 -4.8115 1.3074 14 6 -0.7242 -5.9740 1.3080 15 6 0.0361 -7.2957 1.1809 16 6 0.8294 -7.3039 -0.1274 17 6 1.8244 -6.1411 -0.1277 18 1 2.5095 -6.2481 0.7133 19 8 2.5654 -6.1488 -1.3495 20 1 -0.4850 -0.8400 -0.0004 21 1 0.3556 -2.3880 -0.0005 22 1 2.6840 -3.7141 -0.8921 23 1 2.6853 -3.7149 0.8878 24 1 0.9555 -4.9186 2.1485 25 1 -0.2715 -3.8700 1.3978 26 1 -1.4092 -5.8665 0.4670 27 1 -1.2897 -5.9679 2.2398 28 1 -0.6725 -8.1240 1.1818 29 1 0.7210 -7.4032 2.0219 30 1 0.1443 -7.1965 -0.9683 31 1 1.3713 -8.2454 -0.2177 32 1 3.0735 -6.9583 -1.4963 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082994453.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:49 Heat of formation + Delta-G solvation = -65.715867 kcal Electronic energy + Delta-G solvation = -13167.055300 eV Core-core repulsion = 10933.711678 eV Total energy + Delta-G solvation = -2233.343623 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.09372 -35.52420 -34.73963 -31.98551 -29.65463 -29.03625 -24.82319 -23.04153 -22.07650 -20.70747 -19.64800 -17.22301 -17.06629 -15.35760 -14.70233 -14.38543 -13.86087 -13.73977 -13.55422 -13.04526 -12.79064 -12.63036 -11.69295 -11.62415 -11.23792 -10.86466 -10.65024 -10.57627 -10.39630 -10.17601 -10.01139 -9.84694 -9.57630 -9.05059 -8.76603 -6.87836 -6.01877 -2.99511 3.56688 3.62388 3.76321 4.33648 4.70757 4.80098 4.82151 5.05799 5.29222 5.30576 5.47655 5.57659 5.62770 5.66127 5.71134 5.88185 6.04029 6.12465 6.14784 6.21195 6.24431 6.40502 6.52658 6.63689 6.93942 7.01222 7.81832 7.91479 8.85000 9.34304 10.20526 10.36782 11.47269 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.056168 B = 0.008136 C = 0.007383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.380984 B = 3440.758560 C = 3791.806998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.049 4.049 3 Si 1.084 2.916 4 H -0.296 1.296 5 H -0.288 1.288 6 H -0.295 1.295 7 C -0.326 4.326 8 H 0.064 0.936 9 N -0.744 5.744 10 C 0.166 3.834 11 C -0.086 4.086 12 H 0.073 0.927 13 C -0.109 4.109 14 C -0.123 4.123 15 C -0.115 4.115 16 C -0.150 4.150 17 C 0.113 3.887 18 H 0.052 0.948 19 O -0.561 6.561 20 H 0.254 0.746 21 H 0.366 0.634 22 H 0.030 0.970 23 H 0.014 0.986 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.452 -15.444 1.818 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.246 4.246 3 Si 0.915 3.085 4 H -0.224 1.224 5 H -0.214 1.214 6 H -0.222 1.222 7 C -0.457 4.457 8 H 0.082 0.918 9 N -0.390 5.390 10 C 0.039 3.961 11 C -0.105 4.105 12 H 0.092 0.908 13 C -0.147 4.147 14 C -0.160 4.160 15 C -0.153 4.153 16 C -0.188 4.188 17 C 0.054 3.946 18 H 0.070 0.930 19 O -0.365 6.365 20 H 0.065 0.935 21 H 0.199 0.801 22 H 0.047 0.953 23 H 0.032 0.968 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.275 -13.181 1.754 13.358 hybrid contribution 0.172 -2.325 0.083 2.333 sum 1.447 -15.505 1.837 15.681 Atomic orbital electron populations 1.70841 1.06001 1.28306 1.54251 1.25767 0.97108 1.00939 1.00819 0.83183 0.73866 0.75323 0.76156 1.22410 1.21422 1.22209 1.20096 0.92064 0.85940 1.47643 0.91835 1.42401 1.04803 1.01054 1.90740 1.20558 0.93015 0.84509 0.98058 1.21305 0.97590 0.93389 0.98244 0.90832 1.21524 0.97663 0.98638 0.96836 1.21605 0.98145 0.94544 1.01725 1.21475 0.98859 0.97784 0.97170 1.22277 0.99311 0.98303 0.98865 1.21807 0.91728 0.94946 0.86154 0.92980 1.86637 1.65361 1.43189 1.41306 0.93489 0.80108 0.95256 0.96777 0.92102 0.90604 0.91976 0.92021 0.92138 0.92042 0.91249 0.92201 0.78524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.38 13.70 55.49 0.76 -29.62 16 2 C -0.05 -1.50 5.50 -17.43 -0.10 -1.60 16 3 Si 1.08 27.02 29.92 -169.99 -5.09 21.94 16 4 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.33 -9.78 9.99 -15.06 -0.15 -9.93 16 8 H 0.06 1.89 7.83 -52.49 -0.41 1.47 16 9 N -0.74 -20.11 5.33 -59.91 -0.32 -20.43 16 10 C 0.17 3.74 5.57 -4.04 -0.02 3.71 16 11 C -0.09 -1.54 1.96 -90.63 -0.18 -1.72 16 12 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 13 C -0.11 -1.77 5.08 -26.74 -0.14 -1.90 16 14 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 15 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 16 C -0.15 -1.74 5.55 -26.71 -0.15 -1.89 16 17 C 0.11 1.63 2.90 -26.71 -0.08 1.55 16 18 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 19 O -0.56 -8.36 12.56 -35.23 -0.44 -8.80 16 20 H 0.25 8.02 6.77 -40.82 -0.28 7.74 16 21 H 0.37 9.95 5.68 -40.82 -0.23 9.72 16 22 H 0.03 0.71 7.54 -51.93 -0.39 0.32 16 23 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.08 1.41 7.18 -51.93 -0.37 1.04 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.37 3.56 9.08 45.56 0.41 3.98 16 LS Contribution 256.73 15.07 3.87 3.87 Total: -1.00 -33.81 256.73 -6.64 -40.45 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.29 Total: 7.56 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -1.12 Total: -14.95 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.44 Total: -50.05 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.44 Total: -8.80 kcal Atomic # 14 Polarization: 27.02 SS G_CDS: -5.09 Total: 21.94 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.81 -6.64 -40.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082994453.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.269 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds