Wall clock time and date at job start Mon Mar 30 2020 01:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99547 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47100 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47057 * 55.00305 * 11 10 9 13 13 C 1.52995 * 109.47341 * 295.00378 * 11 10 9 14 14 C 1.52997 * 109.47439 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46925 * 59.99845 * 14 13 11 16 16 C 1.53002 * 109.47185 * 300.00033 * 15 14 13 17 17 C 1.52994 * 109.47281 * 174.99979 * 11 10 9 18 18 H 1.08998 * 109.47088 * 60.00036 * 17 11 10 19 19 O 1.42897 * 109.47342 * 300.00161 * 17 11 10 20 20 H 0.96993 * 120.00007 * 179.97438 * 1 2 3 21 21 H 0.96998 * 120.00268 * 0.02562 * 9 7 2 22 22 H 1.08994 * 109.47239 * 300.00354 * 10 9 7 23 23 H 1.08999 * 109.47211 * 60.00448 * 10 9 7 24 24 H 1.09003 * 109.47410 * 299.99676 * 13 11 10 25 25 H 1.09004 * 109.47525 * 59.99772 * 13 11 10 26 26 H 1.09006 * 109.47306 * 300.00139 * 14 13 11 27 27 H 1.09000 * 109.47878 * 180.02562 * 14 13 11 28 28 H 1.09005 * 109.47134 * 179.97438 * 15 14 13 29 29 H 1.08995 * 109.47196 * 60.00438 * 15 14 13 30 30 H 1.08998 * 109.46959 * 299.99995 * 16 15 14 31 31 H 1.09001 * 109.46791 * 179.97438 * 16 15 14 32 32 H 0.96700 * 114.00217 * 179.97438 * 19 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0008 12 1 0.3787 -4.7126 -0.8419 13 6 0.2705 -4.8115 1.3074 14 6 -0.7242 -5.9740 1.3080 15 6 0.0361 -7.2957 1.1809 16 6 0.8294 -7.3039 -0.1274 17 6 1.8244 -6.1411 -0.1277 18 1 2.5095 -6.2481 0.7133 19 8 2.5654 -6.1488 -1.3495 20 1 -0.4850 -0.8400 -0.0004 21 1 0.3556 -2.3880 -0.0005 22 1 2.6840 -3.7141 -0.8921 23 1 2.6853 -3.7149 0.8878 24 1 0.9555 -4.9186 2.1485 25 1 -0.2715 -3.8700 1.3978 26 1 -1.4092 -5.8665 0.4670 27 1 -1.2897 -5.9679 2.2398 28 1 -0.6725 -8.1240 1.1818 29 1 0.7210 -7.4032 2.0219 30 1 0.1443 -7.1965 -0.9683 31 1 1.3713 -8.2454 -0.2177 32 1 3.0735 -6.9583 -1.4963 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082994453.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:49 Heat of formation + Delta-G solvation = -90.737019 kcal Electronic energy + Delta-G solvation = -13168.140299 eV Core-core repulsion = 10933.711678 eV Total energy + Delta-G solvation = -2234.428621 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.31887 -37.04495 -36.34654 -33.82564 -31.12111 -30.48891 -26.65428 -24.91780 -23.34796 -22.07816 -20.87424 -19.41420 -18.22395 -17.03898 -16.22673 -15.70365 -15.61407 -15.21560 -15.04686 -14.54800 -14.29832 -13.85739 -13.05572 -12.94579 -12.76651 -12.58690 -12.36030 -11.99160 -11.89010 -11.65199 -11.48122 -11.36521 -11.05125 -10.94137 -10.64653 -9.14231 -8.45151 -5.37788 1.55726 1.67654 1.82376 2.68922 3.25765 3.35876 3.58449 3.69905 3.89543 4.04805 4.17693 4.27550 4.38676 4.41251 4.45184 4.57272 4.73804 4.87439 5.01221 5.02415 5.15605 5.20511 5.22266 5.30416 5.34094 5.48995 5.54282 6.44881 6.95366 7.05926 7.96095 8.08295 9.07069 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.056168 B = 0.008136 C = 0.007383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.380984 B = 3440.758560 C = 3791.806998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.105 4.105 3 Si 1.134 2.866 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.340 4.340 8 H 0.063 0.937 9 N -0.756 5.756 10 C 0.167 3.833 11 C -0.080 4.080 12 H 0.052 0.948 13 C -0.105 4.105 14 C -0.119 4.119 15 C -0.111 4.111 16 C -0.142 4.142 17 C 0.116 3.884 18 H 0.062 0.938 19 O -0.585 6.585 20 H 0.243 0.757 21 H 0.361 0.639 22 H 0.012 0.988 23 H 0.014 0.986 24 H 0.064 0.936 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 -16.933 2.322 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.296 4.296 3 Si 0.958 3.042 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.471 4.471 8 H 0.081 0.919 9 N -0.401 5.401 10 C 0.040 3.960 11 C -0.099 4.099 12 H 0.071 0.929 13 C -0.142 4.142 14 C -0.156 4.156 15 C -0.149 4.149 16 C -0.179 4.179 17 C 0.057 3.943 18 H 0.080 0.920 19 O -0.394 6.394 20 H 0.053 0.947 21 H 0.193 0.807 22 H 0.030 0.970 23 H 0.032 0.968 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.969 -14.734 2.259 15.036 hybrid contribution -0.002 -1.899 -0.098 1.901 sum 1.967 -16.633 2.161 16.888 Atomic orbital electron populations 1.70958 1.07079 1.27772 1.56251 1.27360 0.97176 1.04776 1.00278 0.82557 0.73423 0.71166 0.77064 1.20725 1.21544 1.20014 1.20458 0.92334 0.87321 1.47015 0.91928 1.42606 1.04778 1.02022 1.90662 1.20656 0.93808 0.84653 0.96854 1.21231 0.96619 0.93713 0.98380 0.92901 1.21448 0.98089 0.98751 0.95958 1.21581 0.97430 0.94269 1.02321 1.21484 0.99257 0.96986 0.97131 1.22216 0.98632 0.98163 0.98934 1.21739 0.92359 0.93752 0.86417 0.91969 1.86574 1.66010 1.45325 1.41470 0.94705 0.80701 0.97041 0.96814 0.91696 0.94007 0.92497 0.90599 0.89680 0.90956 0.92133 0.89035 0.75787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.52 13.70 21.65 0.30 -63.23 16 2 C -0.11 -6.44 5.50 84.86 0.47 -5.97 16 3 Si 1.13 54.25 29.92 68.60 2.05 56.31 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.34 -20.73 9.99 84.03 0.84 -19.89 16 8 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 9 N -0.76 -42.15 5.33 -343.46 -1.83 -43.98 16 10 C 0.17 7.68 5.57 86.38 0.48 8.16 16 11 C -0.08 -2.89 1.96 -10.80 -0.02 -2.92 16 12 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 13 C -0.10 -3.40 5.08 30.59 0.16 -3.24 16 14 C -0.12 -2.86 5.92 30.59 0.18 -2.68 16 15 C -0.11 -2.06 5.92 30.60 0.18 -1.88 16 16 C -0.14 -2.85 5.55 30.61 0.17 -2.68 16 17 C 0.12 3.16 2.90 30.61 0.09 3.25 16 18 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 19 O -0.59 -16.65 12.56 -148.98 -1.87 -18.52 16 20 H 0.24 15.86 6.77 -92.71 -0.63 15.24 16 21 H 0.36 20.55 5.68 -92.71 -0.53 20.02 16 22 H 0.01 0.57 7.54 -2.39 -0.02 0.56 16 23 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.04 1.61 7.18 -2.38 -0.02 1.60 16 26 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.39 6.66 9.08 -74.06 -0.67 5.99 16 Total: -1.00 -73.51 256.73 1.23 -72.28 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.04 Total: 24.99 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 2.54 Total: -27.85 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -1.53 Total: -107.21 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -1.87 Total: -18.52 kcal Atomic # 14 Polarization: 54.25 SS G_CDS: 2.05 Total: 56.31 kcal Total: -73.51 1.23 -72.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082994453.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.455 kcal (2) G-P(sol) polarization free energy of solvation -73.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds