Wall clock time and date at job start Mon Mar 30 2020 01:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00031 * 2 1 4 4 H 1.48500 * 109.47305 * 240.00019 * 3 2 1 5 5 H 1.48502 * 109.46877 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47169 * 120.00226 * 3 2 1 7 7 C 1.37881 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00336 * 175.14258 * 7 2 1 9 9 C 1.50701 * 119.99675 * 355.41870 * 7 2 1 10 10 C 1.53002 * 115.55139 * 274.92507 * 9 7 2 11 11 N 1.46893 * 109.47250 * 294.80834 * 10 9 7 12 12 C 1.46906 * 111.00098 * 185.37571 * 11 10 9 13 13 C 1.52991 * 109.47267 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.47164 * 180.02562 * 13 12 11 15 15 O 1.42902 * 109.46903 * 180.02562 * 14 13 12 16 16 C 1.53005 * 117.49461 * 129.26153 * 9 7 2 17 17 C 1.52998 * 117.49986 * 60.60468 * 9 7 2 18 18 H 0.96998 * 120.00611 * 5.00367 * 1 2 3 19 19 H 1.09004 * 109.46825 * 54.80391 * 10 9 7 20 20 H 1.08997 * 109.47276 * 174.80252 * 10 9 7 21 21 H 1.00901 * 111.00389 * 61.42254 * 11 10 9 22 22 H 1.08998 * 109.46883 * 300.00055 * 12 11 10 23 23 H 1.08995 * 109.46638 * 59.99840 * 12 11 10 24 24 H 1.09007 * 109.47137 * 299.99926 * 13 12 11 25 25 H 1.08999 * 109.47836 * 59.99774 * 13 12 11 26 26 H 1.08996 * 109.46732 * 299.99414 * 14 13 12 27 27 H 1.08995 * 109.46901 * 59.99810 * 14 13 12 28 28 H 0.96703 * 113.99566 * 179.97438 * 15 14 13 29 29 H 1.08998 * 117.50096 * 359.97438 * 16 9 7 30 30 H 1.08999 * 117.49296 * 145.01991 * 16 9 7 31 31 H 1.09004 * 117.49634 * 214.97533 * 17 9 7 32 32 H 1.08994 * 117.49846 * 359.97129 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0816 -1.1958 -0.0797 9 6 1.2546 -2.4971 0.1031 10 6 0.9188 -2.9541 1.5242 11 7 2.1613 -3.2494 2.2500 12 6 1.8751 -3.8125 3.5763 13 6 3.1905 -4.1069 4.3000 14 6 2.8924 -4.6941 5.6811 15 8 4.1211 -4.9685 6.3573 16 6 1.5730 -3.5796 -0.9303 17 6 0.2453 -2.8211 -1.0002 18 1 -0.4851 0.8368 -0.0733 19 1 0.3753 -2.1632 2.0412 20 1 0.3012 -3.8511 1.4810 21 1 2.7412 -2.4269 2.3239 22 1 1.2928 -3.0970 4.1569 23 1 1.3079 -4.7365 3.4639 24 1 3.7725 -4.8227 3.7192 25 1 3.7582 -3.1833 4.4123 26 1 2.3104 -3.9787 6.2621 27 1 2.3250 -5.6179 5.5684 28 1 4.0081 -5.3433 7.2416 29 1 2.3246 -3.3490 -1.6853 30 1 1.5429 -4.6171 -0.5978 31 1 -0.6578 -3.3600 -0.7136 32 1 0.1234 -2.0915 -1.8007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853783.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:13 Heat of formation + Delta-G solvation = -39.546441 kcal Electronic energy + Delta-G solvation = -12694.777966 eV Core-core repulsion = 10462.569135 eV Total energy + Delta-G solvation = -2232.208831 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.41225 -36.74784 -34.73552 -31.88663 -30.91547 -26.08295 -25.07252 -22.74050 -21.15481 -20.81948 -18.97008 -17.34177 -15.88798 -15.79856 -14.64530 -14.60189 -14.31994 -13.83945 -13.12111 -12.95530 -12.35288 -11.94598 -11.41382 -11.05103 -10.99340 -10.89912 -10.88531 -10.73146 -10.42693 -10.05000 -9.96999 -9.30298 -8.81278 -8.36614 -8.02545 -7.49764 -5.99088 -4.06581 3.31034 3.36070 3.38968 4.13104 4.41790 5.00203 5.08906 5.28462 5.31039 5.46064 5.62676 5.66536 5.83763 5.96527 6.19717 6.36914 6.44206 6.51729 6.60600 6.86463 6.88576 6.96298 7.24073 7.53220 7.56005 7.64767 7.90864 8.00900 8.28079 8.53360 8.97117 9.59064 11.08095 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.033126 B = 0.008323 C = 0.007169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.060155 B = 3363.555576 C = 3904.513970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.493 4.493 8 H 0.060 0.940 9 C 0.045 3.955 10 C 0.106 3.894 11 N -0.681 5.681 12 C 0.062 3.938 13 C -0.118 4.118 14 C 0.077 3.923 15 O -0.576 6.576 16 C -0.201 4.201 17 C -0.156 4.156 18 H 0.259 0.741 19 H 0.030 0.970 20 H 0.038 0.962 21 H 0.348 0.652 22 H 0.021 0.979 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.375 0.625 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.197 -6.625 8.605 11.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.044 3.956 10 C -0.022 4.022 11 N -0.313 5.313 12 C -0.069 4.069 13 C -0.156 4.156 14 C -0.001 4.001 15 O -0.381 6.381 16 C -0.238 4.238 17 C -0.194 4.194 18 H 0.069 0.931 19 H 0.048 0.952 20 H 0.057 0.943 21 H 0.166 0.834 22 H 0.039 0.961 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.222 0.778 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.348 -6.860 7.810 10.657 hybrid contribution -0.293 1.527 0.933 1.813 sum 2.056 -5.333 8.743 10.445 Atomic orbital electron populations 1.69995 1.05847 1.26636 1.49357 1.25013 0.94806 0.98836 0.94764 0.86729 0.79642 0.83315 0.78722 1.20265 1.21417 1.20200 1.20450 0.92800 0.88798 1.51004 0.92223 1.18750 0.97937 0.92821 0.86051 1.21445 0.88990 0.96439 0.95374 1.60407 1.19122 1.36823 1.14921 1.21776 0.95208 0.99178 0.90695 1.21483 0.98671 1.01939 0.93477 1.22178 0.85588 0.98536 0.93793 1.86500 1.31721 1.86348 1.33505 1.22872 0.99724 0.95880 1.05354 1.22497 0.90837 1.01746 1.04304 0.93084 0.95161 0.94302 0.83352 0.96075 0.91849 0.90517 0.91429 0.93883 0.93722 0.77849 0.90922 0.91772 0.92375 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.00 12.65 55.43 0.70 -24.30 16 2 C 0.07 1.87 5.43 -17.82 -0.10 1.78 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.49 -13.37 8.33 -34.44 -0.29 -13.66 16 8 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 9 C 0.05 1.13 1.65 -155.66 -0.26 0.87 16 10 C 0.11 2.41 5.54 -3.83 -0.02 2.39 16 11 N -0.68 -13.64 6.47 -113.79 -0.74 -14.38 16 12 C 0.06 1.00 5.68 -3.83 -0.02 0.97 16 13 C -0.12 -1.70 5.84 -26.73 -0.16 -1.86 16 14 C 0.08 0.91 7.05 37.16 0.26 1.17 16 15 O -0.58 -6.89 13.66 -35.23 -0.48 -7.37 16 16 C -0.20 -4.61 9.96 -26.69 -0.27 -4.88 16 17 C -0.16 -3.79 9.14 -26.69 -0.24 -4.03 16 18 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 19 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 20 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 21 H 0.35 7.27 8.31 -39.29 -0.33 6.94 16 22 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 24 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.38 2.54 9.12 45.56 0.42 2.95 16 29 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.08 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 273.46 15.07 4.12 4.12 Total: -1.00 -29.44 273.46 -7.03 -36.47 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.53 Total: 6.63 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -1.09 Total: -17.24 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.04 Total: -38.67 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.48 Total: -7.37 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.44 -7.03 -36.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853783.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.073 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds