Wall clock time and date at job start Mon Mar 30 2020 01:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99924 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47090 * 179.97438 * 11 10 9 13 13 H 1.08999 * 110.43730 * 307.53944 * 12 11 10 14 14 C 1.54891 * 110.48381 * 70.22604 * 12 11 10 15 15 C 1.54891 * 102.74749 * 156.62030 * 14 12 11 16 16 C 1.54272 * 104.19498 * 322.05582 * 15 14 12 17 17 C 1.53873 * 106.59747 * 23.61265 * 16 15 14 18 18 H 1.08998 * 110.03363 * 119.28464 * 17 16 15 19 19 O 1.42903 * 110.06903 * 240.69431 * 17 16 15 20 20 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.00893 * 111.00654 * 56.04333 * 10 9 7 24 24 H 1.08993 * 109.46933 * 299.99334 * 11 10 9 25 25 H 1.09003 * 109.46864 * 60.00013 * 11 10 9 26 26 H 1.09001 * 110.75439 * 274.93114 * 14 12 11 27 27 H 1.08996 * 110.75992 * 38.30341 * 14 12 11 28 28 H 1.09001 * 110.48474 * 203.37715 * 15 14 12 29 29 H 1.09003 * 110.48523 * 80.73485 * 15 14 12 30 30 H 1.08994 * 110.02872 * 264.32742 * 16 15 14 31 31 H 1.09006 * 110.06749 * 142.91826 * 16 15 14 32 32 H 0.96701 * 113.99860 * 297.18430 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 1.5052 -4.9070 -0.0020 12 6 2.5302 -6.0430 -0.0023 13 1 3.2472 -5.9084 -0.8122 14 6 3.2577 -6.1172 1.3631 15 6 3.7476 -7.5858 1.4100 16 6 2.5970 -8.3891 0.7692 17 6 1.8230 -7.4082 -0.1288 18 1 1.8504 -7.7484 -1.1640 19 8 0.4689 -7.3010 0.3151 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6246 -2.5563 -0.8919 23 1 2.8399 -3.5490 0.7803 24 1 0.8801 -4.9816 0.8877 25 1 0.8807 -4.9813 -0.8923 26 1 4.1013 -5.4275 1.3892 27 1 2.5661 -5.9143 2.1808 28 1 3.9060 -7.9023 2.4409 29 1 4.6630 -7.7013 0.8296 30 1 1.9401 -8.7835 1.5444 31 1 2.9995 -9.2059 0.1699 32 1 -0.0297 -8.1277 0.2601 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084237480.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:58 Heat of formation + Delta-G solvation = -71.247703 kcal Electronic energy + Delta-G solvation = -12811.027474 eV Core-core repulsion = 10577.443973 eV Total energy + Delta-G solvation = -2233.583501 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.97289 -35.34218 -34.39587 -32.37281 -29.52441 -27.62297 -26.19950 -23.13025 -21.39067 -20.44577 -19.51547 -17.29248 -16.27385 -15.39333 -14.73105 -14.61788 -14.46108 -13.97781 -12.93453 -12.63106 -12.57199 -12.32139 -11.66225 -11.34842 -11.08853 -11.03408 -10.83158 -10.62089 -10.41497 -10.36099 -10.14482 -9.80009 -9.72885 -9.08703 -8.40806 -7.14864 -5.96209 -3.98177 3.37739 3.41071 3.44479 4.34822 4.47762 4.62733 4.65925 4.97363 5.28812 5.39147 5.43553 5.49517 5.67988 5.73382 5.80321 5.88767 6.00129 6.12086 6.18692 6.31332 6.43713 6.65237 6.79814 7.38525 7.53691 7.77535 7.86538 8.22573 8.52203 8.73785 9.11511 9.66316 11.14958 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.068124 B = 0.006605 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.919530 B = 4238.155046 C = 4526.606571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.694 5.694 11 C 0.079 3.921 12 C -0.082 4.082 13 H 0.089 0.911 14 C -0.121 4.121 15 C -0.122 4.122 16 C -0.156 4.156 17 C 0.102 3.898 18 H 0.054 0.946 19 O -0.556 6.556 20 H 0.261 0.739 21 H -0.015 1.015 22 H 0.027 0.973 23 H 0.325 0.675 24 H 0.026 0.974 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.679 -15.870 1.628 16.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.067 3.933 10 N -0.324 5.324 11 C -0.051 4.051 12 C -0.101 4.101 13 H 0.107 0.893 14 C -0.158 4.158 15 C -0.159 4.159 16 C -0.194 4.194 17 C 0.043 3.957 18 H 0.072 0.928 19 O -0.361 6.361 20 H 0.071 0.929 21 H 0.003 0.997 22 H 0.045 0.955 23 H 0.141 0.859 24 H 0.044 0.956 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 4.771 -15.104 1.033 15.873 hybrid contribution -0.125 0.221 0.783 0.823 sum 4.647 -14.882 1.816 15.696 Atomic orbital electron populations 1.69970 1.06084 1.26786 1.50995 1.25002 0.94877 0.99334 0.95447 0.86541 0.79402 0.82712 0.78599 1.20180 1.21360 1.20305 1.21185 0.93451 0.90376 1.50221 0.92073 1.19522 0.90644 0.87383 0.95718 1.60714 1.21406 1.01667 1.48649 1.21588 0.94376 0.88805 1.00340 1.22112 0.97182 0.92747 0.98066 0.89284 1.22584 1.00043 0.95728 0.97457 1.22294 0.97577 0.95782 1.00277 1.22929 0.98544 0.98377 0.99567 1.22501 0.81859 0.95764 0.95599 0.92805 1.86670 1.23453 1.37460 1.88491 0.92917 0.99697 0.95536 0.85859 0.95568 0.92049 0.91028 0.91421 0.91918 0.91675 0.91150 0.91805 0.78510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -15.18 9.32 -34.44 -0.32 -15.51 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.42 5.44 -4.98 -0.03 5.39 16 10 N -0.69 -15.95 6.49 -115.06 -0.75 -16.70 16 11 C 0.08 1.56 4.32 -3.82 -0.02 1.54 16 12 C -0.08 -1.26 3.07 -88.96 -0.27 -1.53 16 13 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 14 C -0.12 -1.66 5.69 -24.74 -0.14 -1.80 16 15 C -0.12 -1.33 6.83 -25.07 -0.17 -1.50 16 16 C -0.16 -1.62 6.61 -25.61 -0.17 -1.79 16 17 C 0.10 1.29 4.12 -25.61 -0.11 1.19 16 18 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 19 O -0.56 -7.51 11.74 -35.23 -0.41 -7.92 16 20 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 21 H -0.01 -0.44 8.14 -51.93 -0.42 -0.86 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.33 7.10 8.01 -39.30 -0.31 6.78 16 24 H 0.03 0.55 7.58 -51.93 -0.39 0.16 16 25 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 27 H 0.07 1.01 7.97 -51.93 -0.41 0.60 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.70 7.96 -51.93 -0.41 0.29 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.37 3.18 9.11 45.56 0.42 3.59 16 LS Contribution 263.16 15.07 3.97 3.97 Total: -1.00 -32.28 263.16 -7.27 -39.55 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -4.46 Total: 3.43 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -1.32 Total: -12.50 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.01 Total: -43.76 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.41 Total: -7.92 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.28 -7.27 -39.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084237480.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.701 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds