Wall clock time and date at job start Mon Mar 30 2020 01:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99924 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47090 * 179.97438 * 11 10 9 13 13 H 1.08999 * 110.43730 * 307.53944 * 12 11 10 14 14 C 1.54891 * 110.48381 * 70.22604 * 12 11 10 15 15 C 1.54891 * 102.74749 * 156.62030 * 14 12 11 16 16 C 1.54272 * 104.19498 * 322.05582 * 15 14 12 17 17 C 1.53873 * 106.59747 * 23.61265 * 16 15 14 18 18 H 1.08998 * 110.03363 * 119.28464 * 17 16 15 19 19 O 1.42903 * 110.06903 * 240.69431 * 17 16 15 20 20 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.00893 * 111.00654 * 56.04333 * 10 9 7 24 24 H 1.08993 * 109.46933 * 299.99334 * 11 10 9 25 25 H 1.09003 * 109.46864 * 60.00013 * 11 10 9 26 26 H 1.09001 * 110.75439 * 274.93114 * 14 12 11 27 27 H 1.08996 * 110.75992 * 38.30341 * 14 12 11 28 28 H 1.09001 * 110.48474 * 203.37715 * 15 14 12 29 29 H 1.09003 * 110.48523 * 80.73485 * 15 14 12 30 30 H 1.08994 * 110.02872 * 264.32742 * 16 15 14 31 31 H 1.09006 * 110.06749 * 142.91826 * 16 15 14 32 32 H 0.96701 * 113.99860 * 297.18430 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 1.5052 -4.9070 -0.0020 12 6 2.5302 -6.0430 -0.0023 13 1 3.2472 -5.9084 -0.8122 14 6 3.2577 -6.1172 1.3631 15 6 3.7476 -7.5858 1.4100 16 6 2.5970 -8.3891 0.7692 17 6 1.8230 -7.4082 -0.1288 18 1 1.8504 -7.7484 -1.1640 19 8 0.4689 -7.3010 0.3151 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6246 -2.5563 -0.8919 23 1 2.8399 -3.5490 0.7803 24 1 0.8801 -4.9816 0.8877 25 1 0.8807 -4.9813 -0.8923 26 1 4.1013 -5.4275 1.3892 27 1 2.5661 -5.9143 2.1808 28 1 3.9060 -7.9023 2.4409 29 1 4.6630 -7.7013 0.8296 30 1 1.9401 -8.7835 1.5444 31 1 2.9995 -9.2059 0.1699 32 1 -0.0297 -8.1277 0.2601 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084237480.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:58 Heat of formation + Delta-G solvation = -96.255833 kcal Electronic energy + Delta-G solvation = -12812.111908 eV Core-core repulsion = 10577.443973 eV Total energy + Delta-G solvation = -2234.667935 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.06963 -37.00581 -35.69582 -34.46577 -31.08253 -28.61315 -28.14566 -24.82771 -23.36274 -21.46443 -20.72824 -18.73908 -18.12108 -16.83142 -16.40673 -16.18759 -15.61615 -15.37054 -14.57578 -14.41954 -14.08815 -13.59366 -13.28763 -13.14811 -12.75583 -12.62504 -12.18834 -12.05389 -11.98710 -11.64963 -11.46840 -11.34785 -11.14966 -10.76754 -10.66812 -9.14801 -8.23476 -6.36327 1.40568 1.45458 1.53556 2.39791 3.09074 3.40275 3.46935 3.66816 3.82622 4.09204 4.38442 4.44991 4.50824 4.61059 4.69487 4.86297 4.88682 4.99249 5.06237 5.09452 5.18973 5.22484 5.25549 5.41500 5.48139 5.60521 5.99859 6.42902 6.70133 6.86730 7.02057 7.35000 8.88495 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.068124 B = 0.006605 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.919530 B = 4238.155046 C = 4526.606571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.208 3.792 10 N -0.688 5.688 11 C 0.085 3.915 12 C -0.083 4.083 13 H 0.092 0.908 14 C -0.123 4.123 15 C -0.116 4.116 16 C -0.148 4.148 17 C 0.102 3.898 18 H 0.068 0.932 19 O -0.583 6.583 20 H 0.266 0.734 21 H -0.045 1.045 22 H -0.004 1.004 23 H 0.334 0.666 24 H 0.008 0.992 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.375 -16.581 1.697 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.080 3.920 10 N -0.319 5.319 11 C -0.044 4.044 12 C -0.102 4.102 13 H 0.110 0.890 14 C -0.160 4.160 15 C -0.153 4.153 16 C -0.185 4.185 17 C 0.043 3.957 18 H 0.086 0.914 19 O -0.391 6.391 20 H 0.075 0.925 21 H -0.027 1.027 22 H 0.014 0.986 23 H 0.151 0.849 24 H 0.027 0.973 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 6.474 -15.859 1.105 17.165 hybrid contribution -0.720 0.402 0.755 1.118 sum 5.754 -15.457 1.860 16.598 Atomic orbital electron populations 1.70115 1.08024 1.28193 1.51333 1.26060 0.95851 1.03714 0.94356 0.85286 0.78022 0.77078 0.79288 1.19102 1.20642 1.18908 1.21533 0.93889 0.91304 1.51002 0.91473 1.19193 0.90727 0.89307 0.92795 1.60620 1.20518 1.01761 1.48959 1.21567 0.95352 0.88936 0.98570 1.22110 0.96384 0.92479 0.99241 0.89017 1.22566 0.99427 0.98278 0.95747 1.22291 0.98282 0.93235 1.01517 1.22873 0.97982 0.98170 0.99492 1.22533 0.81663 0.94385 0.97153 0.91366 1.86614 1.24250 1.39584 1.88692 0.92526 1.02749 0.98634 0.84928 0.97349 0.93735 0.91235 0.93174 0.90682 0.90247 0.90596 0.89259 0.76078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.97 13.29 21.45 0.28 -58.69 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.98 45.46 29.54 68.60 2.03 47.48 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -32.37 9.32 25.60 0.24 -32.13 16 8 H 0.07 3.86 7.81 -2.91 -0.02 3.84 16 9 C 0.21 12.11 5.44 85.56 0.47 12.57 16 10 N -0.69 -32.51 6.49 -517.93 -3.36 -35.87 16 11 C 0.09 3.47 4.32 86.30 0.37 3.85 16 12 C -0.08 -2.50 3.07 -9.72 -0.03 -2.53 16 13 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 14 C -0.12 -3.26 5.69 31.89 0.18 -3.08 16 15 C -0.12 -2.20 6.83 31.67 0.22 -1.99 16 16 C -0.15 -2.58 6.61 31.32 0.21 -2.37 16 17 C 0.10 2.40 4.12 31.32 0.13 2.53 16 18 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 19 O -0.58 -15.30 11.74 -148.98 -1.75 -17.05 16 20 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 21 H -0.05 -2.84 8.14 -2.39 -0.02 -2.86 16 22 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 23 H 0.33 14.82 8.01 -89.70 -0.72 14.10 16 24 H 0.01 0.37 7.58 -2.39 -0.02 0.35 16 25 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 1.84 8.05 -2.39 -0.02 1.82 16 27 H 0.05 1.50 7.97 -2.39 -0.02 1.48 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.27 7.96 -2.39 -0.02 1.25 16 31 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.39 6.17 9.11 -74.06 -0.67 5.49 16 Total: -1.00 -70.44 263.16 -0.85 -71.30 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -0.30 Total: 15.64 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 2.24 Total: -22.80 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -3.08 Total: -94.56 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -1.75 Total: -17.05 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -70.44 -0.85 -71.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084237480.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.960 kcal (2) G-P(sol) polarization free energy of solvation -70.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds