Wall clock time and date at job start Mon Mar 30 2020 01:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86798 * 120.00214 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99554 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99735 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99728 * 3 2 1 7 7 C 1.38635 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99756 * 180.02562 * 7 2 1 9 9 O 1.34923 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.42906 * 116.99863 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47406 * 330.00349 * 10 9 7 12 12 C 1.53006 * 109.46798 * 90.00097 * 10 9 7 13 13 C 1.52995 * 109.46669 * 60.00057 * 12 10 9 14 14 C 1.53004 * 109.47487 * 60.00352 * 13 12 10 15 15 C 1.52998 * 109.46701 * 299.99424 * 14 13 12 16 16 C 1.52995 * 109.47188 * 210.00137 * 10 9 7 17 17 H 1.09008 * 109.47105 * 179.97438 * 16 10 9 18 18 C 1.52998 * 109.47106 * 60.00162 * 16 10 9 19 19 N 1.46905 * 109.47354 * 174.99778 * 18 16 10 20 20 H 0.96996 * 120.00015 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46718 * 180.02562 * 12 10 9 22 22 H 1.09001 * 109.47136 * 299.99878 * 12 10 9 23 23 H 1.08999 * 109.47597 * 299.99519 * 13 12 10 24 24 H 1.09007 * 109.46897 * 179.97438 * 13 12 10 25 25 H 1.08994 * 109.47103 * 179.97438 * 14 13 12 26 26 H 1.08997 * 109.47001 * 59.99411 * 14 13 12 27 27 H 1.08997 * 109.47533 * 300.00287 * 15 14 13 28 28 H 1.08995 * 109.47212 * 179.97438 * 15 14 13 29 29 H 1.08997 * 109.47200 * 295.00007 * 18 16 10 30 30 H 1.09005 * 109.47087 * 55.00155 * 18 16 10 31 31 H 1.00894 * 111.00675 * 180.02562 * 19 18 16 32 32 H 1.00901 * 111.00112 * 303.95846 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4973 2.0465 1.4001 5 1 1.4474 2.6527 -0.7001 6 1 3.5475 1.4401 -0.7000 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3343 -2.3691 0.0005 10 6 2.1126 -3.5676 0.0005 11 1 3.0570 -3.3876 -0.5132 12 6 2.3903 -3.9953 1.4431 13 6 1.0648 -4.2479 2.1642 14 6 0.2949 -5.3561 1.4430 15 6 0.0172 -4.9283 0.0005 16 6 1.3427 -4.6756 -0.7207 17 1 1.9366 -5.5897 -0.7211 18 6 1.0650 -4.2479 -2.1632 19 7 0.4326 -5.3571 -2.8898 20 1 -0.4850 -0.8400 -0.0004 21 1 2.9843 -4.9092 1.4431 22 1 2.9388 -3.2058 1.9569 23 1 0.4711 -3.3337 2.1642 24 1 1.2626 -4.5530 3.1918 25 1 -0.6492 -5.5363 1.9570 26 1 0.8885 -6.2702 1.4431 27 1 -0.5764 -4.0142 0.0004 28 1 -0.5309 -5.7179 -0.5135 29 1 0.3983 -3.3857 -2.1646 30 1 2.0033 -3.9825 -2.6505 31 1 0.2393 -5.0996 -3.8460 32 1 1.0026 -6.1886 -2.8478 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084242167.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:54 Heat of formation + Delta-G solvation = -66.094018 kcal Electronic energy + Delta-G solvation = -13614.966148 eV Core-core repulsion = 11381.606128 eV Total energy + Delta-G solvation = -2233.360020 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.67262 -35.18497 -34.06693 -31.52728 -29.71700 -29.00631 -24.10518 -23.82720 -21.72703 -20.48647 -19.08118 -17.55780 -15.81626 -14.78844 -14.63047 -14.38171 -13.82771 -13.64305 -13.55717 -13.10820 -12.48218 -12.03546 -11.40628 -11.31446 -11.18173 -10.85716 -10.35435 -10.28490 -10.17053 -10.12141 -9.70515 -9.54367 -9.18262 -8.93969 -8.34396 -7.86631 -6.21098 -3.51001 3.42545 3.48198 3.62333 4.48442 4.87258 5.20337 5.34233 5.45076 5.55737 5.70175 5.74059 5.87933 5.94055 6.02599 6.17656 6.23204 6.24907 6.39015 6.49711 6.61138 6.67199 6.83997 6.90729 6.97483 7.05455 7.23138 7.42723 7.70615 7.76923 8.92875 9.53156 10.19423 11.26942 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.035776 B = 0.011896 C = 0.010258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.455644 B = 2353.190831 C = 2728.928653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 1.089 2.911 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.292 1.292 7 C -0.443 4.443 8 H 0.049 0.951 9 O -0.299 6.299 10 C 0.109 3.891 11 H 0.033 0.967 12 C -0.134 4.134 13 C -0.110 4.110 14 C -0.115 4.115 15 C -0.098 4.098 16 C -0.074 4.074 17 H 0.059 0.941 18 C 0.070 3.930 19 N -0.850 5.850 20 H 0.276 0.724 21 H 0.047 0.953 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.019 0.981 31 H 0.335 0.665 32 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -9.508 -1.063 10.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.208 4.208 3 Si 0.917 3.083 4 H -0.217 1.217 5 H -0.208 1.208 6 H -0.218 1.218 7 C -0.522 4.522 8 H 0.066 0.934 9 O -0.215 6.215 10 C 0.049 3.951 11 H 0.051 0.949 12 C -0.172 4.172 13 C -0.148 4.148 14 C -0.152 4.152 15 C -0.135 4.135 16 C -0.093 4.093 17 H 0.078 0.922 18 C -0.060 4.060 19 N -0.378 5.378 20 H 0.085 0.915 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.037 0.963 31 H 0.147 0.853 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.348 -7.775 -0.535 8.140 hybrid contribution 1.561 -1.693 -0.548 2.368 sum 3.909 -9.469 -1.083 10.301 Atomic orbital electron populations 1.70532 1.06168 1.30735 1.48168 1.25903 0.97116 1.00122 0.97675 0.83176 0.73899 0.74617 0.76634 1.21652 1.20761 1.21817 1.21740 0.91008 0.84405 1.55089 0.93367 1.85387 1.32303 1.10591 1.93201 1.21620 0.93139 0.87295 0.93007 0.94858 1.21987 0.97152 0.99675 0.98423 1.21362 0.96988 0.99447 0.96983 1.21516 0.99233 0.97714 0.96762 1.21334 0.96763 1.01698 0.93727 1.21179 0.97298 0.96775 0.94072 0.92245 1.21773 0.97162 0.93858 0.93182 1.58781 1.52811 1.07163 1.19027 0.91457 0.93423 0.92157 0.90727 0.93683 0.92882 0.93320 0.91091 0.92129 0.89596 0.96318 0.85298 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.04 13.70 55.48 0.76 -28.28 16 2 C -0.01 -0.24 5.49 -17.51 -0.10 -0.34 16 3 Si 1.09 25.88 29.92 -169.99 -5.09 20.80 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.44 -12.92 9.77 30.88 0.30 -12.61 16 8 H 0.05 1.38 7.65 -52.48 -0.40 0.98 16 9 O -0.30 -8.10 6.90 -16.49 -0.11 -8.21 16 10 C 0.11 2.38 2.39 -26.73 -0.06 2.32 16 11 H 0.03 0.75 7.80 -51.93 -0.41 0.34 16 12 C -0.13 -2.63 5.63 -26.73 -0.15 -2.78 16 13 C -0.11 -2.07 5.78 -26.73 -0.15 -2.23 16 14 C -0.11 -1.92 5.92 -26.73 -0.16 -2.08 16 15 C -0.10 -1.80 4.95 -26.73 -0.13 -1.93 16 16 C -0.07 -1.37 2.16 -90.62 -0.20 -1.57 16 17 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 18 C 0.07 1.29 5.96 -3.82 -0.02 1.26 16 19 N -0.85 -12.40 9.08 -10.37 -0.09 -12.49 16 20 H 0.28 8.92 7.97 -40.82 -0.33 8.60 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 23 H 0.07 1.66 7.68 -51.93 -0.40 1.26 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.54 7.68 -51.93 -0.40 1.14 16 28 H 0.06 1.04 7.75 -51.93 -0.40 0.63 16 29 H 0.09 1.88 7.83 -51.93 -0.41 1.47 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.34 4.30 9.08 -39.30 -0.36 3.94 16 32 H 0.33 4.13 8.99 -39.29 -0.35 3.78 16 LS Contribution 258.40 15.07 3.89 3.89 Total: -1.00 -31.46 258.40 -6.52 -37.98 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.20 Total: 6.27 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -0.67 Total: -19.95 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.67 Total: -40.78 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.11 Total: -8.21 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.09 Total: 20.80 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.46 -6.52 -37.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084242167.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.117 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds