Wall clock time and date at job start Mon Mar 30 2020 01:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86798 * 120.00214 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99554 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99735 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99728 * 3 2 1 7 7 C 1.38635 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99756 * 180.02562 * 7 2 1 9 9 O 1.34923 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.42906 * 116.99863 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47406 * 330.00349 * 10 9 7 12 12 C 1.53006 * 109.46798 * 90.00097 * 10 9 7 13 13 C 1.52995 * 109.46669 * 60.00057 * 12 10 9 14 14 C 1.53004 * 109.47487 * 60.00352 * 13 12 10 15 15 C 1.52998 * 109.46701 * 299.99424 * 14 13 12 16 16 C 1.52995 * 109.47188 * 210.00137 * 10 9 7 17 17 H 1.09008 * 109.47105 * 179.97438 * 16 10 9 18 18 C 1.52998 * 109.47106 * 60.00162 * 16 10 9 19 19 N 1.46905 * 109.47354 * 174.99778 * 18 16 10 20 20 H 0.96996 * 120.00015 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46718 * 180.02562 * 12 10 9 22 22 H 1.09001 * 109.47136 * 299.99878 * 12 10 9 23 23 H 1.08999 * 109.47597 * 299.99519 * 13 12 10 24 24 H 1.09007 * 109.46897 * 179.97438 * 13 12 10 25 25 H 1.08994 * 109.47103 * 179.97438 * 14 13 12 26 26 H 1.08997 * 109.47001 * 59.99411 * 14 13 12 27 27 H 1.08997 * 109.47533 * 300.00287 * 15 14 13 28 28 H 1.08995 * 109.47212 * 179.97438 * 15 14 13 29 29 H 1.08997 * 109.47200 * 295.00007 * 18 16 10 30 30 H 1.09005 * 109.47087 * 55.00155 * 18 16 10 31 31 H 1.00894 * 111.00675 * 180.02562 * 19 18 16 32 32 H 1.00901 * 111.00112 * 303.95846 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4973 2.0465 1.4001 5 1 1.4474 2.6527 -0.7001 6 1 3.5475 1.4401 -0.7000 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3343 -2.3691 0.0005 10 6 2.1126 -3.5676 0.0005 11 1 3.0570 -3.3876 -0.5132 12 6 2.3903 -3.9953 1.4431 13 6 1.0648 -4.2479 2.1642 14 6 0.2949 -5.3561 1.4430 15 6 0.0172 -4.9283 0.0005 16 6 1.3427 -4.6756 -0.7207 17 1 1.9366 -5.5897 -0.7211 18 6 1.0650 -4.2479 -2.1632 19 7 0.4326 -5.3571 -2.8898 20 1 -0.4850 -0.8400 -0.0004 21 1 2.9843 -4.9092 1.4431 22 1 2.9388 -3.2058 1.9569 23 1 0.4711 -3.3337 2.1642 24 1 1.2626 -4.5530 3.1918 25 1 -0.6492 -5.5363 1.9570 26 1 0.8885 -6.2702 1.4431 27 1 -0.5764 -4.0142 0.0004 28 1 -0.5309 -5.7179 -0.5135 29 1 0.3983 -3.3857 -2.1646 30 1 2.0033 -3.9825 -2.6505 31 1 0.2393 -5.0996 -3.8460 32 1 1.0026 -6.1886 -2.8478 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084242167.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:54 Heat of formation + Delta-G solvation = -88.692007 kcal Electronic energy + Delta-G solvation = -13615.946071 eV Core-core repulsion = 11381.606128 eV Total energy + Delta-G solvation = -2234.339943 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.33529 -37.09142 -35.49126 -33.69638 -31.17371 -30.65724 -26.23096 -25.46123 -23.31066 -21.99201 -20.83019 -19.59512 -17.31998 -16.71771 -16.21285 -16.02981 -15.52159 -15.23275 -15.19201 -14.82429 -14.07363 -13.73878 -12.97155 -12.91816 -12.76488 -12.68171 -12.11061 -11.95192 -11.91415 -11.79652 -11.54112 -11.27593 -10.89699 -10.74611 -10.04860 -9.62014 -8.58715 -5.84965 1.49865 1.62408 1.77417 2.52530 3.23951 3.49948 3.61453 3.87827 3.99354 4.05558 4.21390 4.36930 4.44231 4.54681 4.63495 4.65662 4.72137 4.89238 4.98415 5.08054 5.12363 5.31212 5.32985 5.43388 5.45184 5.52317 5.67661 6.16842 6.54161 6.63701 7.26299 8.03686 8.90636 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.035776 B = 0.011896 C = 0.010258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.455644 B = 2353.190831 C = 2728.928653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.068 4.068 3 Si 1.137 2.863 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.444 4.444 8 H 0.050 0.950 9 O -0.327 6.327 10 C 0.095 3.905 11 H 0.024 0.976 12 C -0.131 4.131 13 C -0.108 4.108 14 C -0.108 4.108 15 C -0.092 4.092 16 C -0.069 4.069 17 H 0.096 0.904 18 C 0.080 3.920 19 N -0.843 5.843 20 H 0.254 0.746 21 H 0.087 0.913 22 H 0.038 0.962 23 H 0.025 0.975 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.022 0.978 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.016 0.984 31 H 0.347 0.653 32 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.672 -11.281 -0.926 12.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.260 4.260 3 Si 0.957 3.043 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.524 4.524 8 H 0.067 0.933 9 O -0.243 6.243 10 C 0.036 3.964 11 H 0.042 0.958 12 C -0.169 4.169 13 C -0.146 4.146 14 C -0.146 4.146 15 C -0.130 4.130 16 C -0.087 4.087 17 H 0.115 0.885 18 C -0.051 4.051 19 N -0.374 5.374 20 H 0.062 0.938 21 H 0.106 0.894 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.160 0.840 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.727 -9.598 -0.403 10.304 hybrid contribution 1.160 -1.265 -0.612 1.822 sum 4.887 -10.863 -1.016 11.955 Atomic orbital electron populations 1.70686 1.07423 1.29288 1.51263 1.27702 0.97147 1.04231 0.96885 0.82605 0.73601 0.70323 0.77730 1.19936 1.20593 1.19251 1.22084 0.91178 0.85609 1.53480 0.93254 1.85376 1.33909 1.11556 1.93463 1.22032 0.92844 0.86468 0.95075 0.95788 1.21954 0.97888 1.00649 0.96365 1.21333 0.96079 0.98258 0.98936 1.21502 1.00181 0.97886 0.94989 1.21263 0.96159 1.00004 0.95524 1.21184 0.97437 0.96672 0.93441 0.88545 1.21476 0.95967 0.93592 0.94025 1.58638 1.52539 1.06540 1.19669 0.93755 0.89430 0.94344 0.95634 0.90998 0.91600 0.89874 0.95865 0.90303 0.94381 0.96589 0.83981 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.29 13.70 21.61 0.30 -62.00 16 2 C -0.07 -4.09 5.49 84.82 0.47 -3.63 16 3 Si 1.14 52.26 29.92 68.60 2.05 54.31 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 7 C -0.44 -26.62 9.77 67.91 0.66 -25.95 16 8 H 0.05 2.86 7.65 -2.91 -0.02 2.84 16 9 O -0.33 -18.40 6.90 -81.92 -0.57 -18.97 16 10 C 0.09 4.13 2.39 30.59 0.07 4.20 16 11 H 0.02 1.07 7.80 -2.39 -0.02 1.06 16 12 C -0.13 -4.95 5.63 30.59 0.17 -4.77 16 13 C -0.11 -3.96 5.78 30.59 0.18 -3.78 16 14 C -0.11 -3.33 5.92 30.59 0.18 -3.15 16 15 C -0.09 -3.28 4.95 30.59 0.15 -3.13 16 16 C -0.07 -2.44 2.16 -10.79 -0.02 -2.46 16 17 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 18 C 0.08 2.92 5.96 86.30 0.51 3.44 16 19 N -0.84 -23.02 9.08 -186.71 -1.69 -24.72 16 20 H 0.25 17.47 7.97 -92.71 -0.74 16.73 16 21 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 22 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.02 1.16 7.68 -2.39 -0.02 1.14 16 24 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 25 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.02 1.03 7.68 -2.39 -0.02 1.01 16 28 H 0.08 2.52 7.75 -2.39 -0.02 2.50 16 29 H 0.04 1.74 7.83 -2.39 -0.02 1.72 16 30 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.35 8.35 9.08 -89.70 -0.81 7.53 16 32 H 0.35 7.55 8.99 -89.69 -0.81 6.75 16 Total: -1.00 -71.27 258.40 1.97 -69.30 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -0.49 Total: 21.32 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 2.38 Total: -39.25 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -1.40 Total: -86.71 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.57 Total: -18.97 kcal Atomic # 14 Polarization: 52.26 SS G_CDS: 2.05 Total: 54.31 kcal Total: -71.27 1.97 -69.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084242167.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.397 kcal (2) G-P(sol) polarization free energy of solvation -71.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds