Wall clock time and date at job start Mon Mar 30 2020 01:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86800 * 119.99580 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00394 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99883 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00490 * 3 2 1 7 7 C 1.38628 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00431 * 180.02562 * 7 2 1 9 9 O 1.34925 * 120.00257 * 359.97438 * 7 2 1 10 10 C 1.42899 * 117.00610 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.46787 * 29.99288 * 10 9 7 12 12 C 1.53000 * 109.46899 * 270.00030 * 10 9 7 13 13 C 1.53001 * 109.47240 * 299.99985 * 12 10 9 14 14 C 1.53005 * 109.46775 * 299.99956 * 13 12 10 15 15 C 1.53000 * 109.47200 * 60.00020 * 14 13 12 16 16 C 1.52992 * 109.47457 * 150.00025 * 10 9 7 17 17 H 1.09004 * 109.47000 * 179.97438 * 16 10 9 18 18 C 1.53000 * 109.47070 * 299.99901 * 16 10 9 19 19 N 1.46907 * 109.47013 * 184.99825 * 18 16 10 20 20 H 0.97000 * 119.99271 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.47457 * 59.99743 * 12 10 9 22 22 H 1.08996 * 109.47335 * 179.97438 * 12 10 9 23 23 H 1.09003 * 109.47275 * 180.02562 * 13 12 10 24 24 H 1.09000 * 109.47599 * 59.99390 * 13 12 10 25 25 H 1.09004 * 109.46998 * 299.99794 * 14 13 12 26 26 H 1.08999 * 109.47240 * 180.02562 * 14 13 12 27 27 H 1.09003 * 109.47021 * 179.97438 * 15 14 13 28 28 H 1.08996 * 109.46809 * 59.99717 * 15 14 13 29 29 H 1.08997 * 109.47158 * 304.99776 * 18 16 10 30 30 H 1.09001 * 109.46982 * 65.00239 * 18 16 10 31 31 H 1.00899 * 110.99634 * 56.05239 * 19 18 16 32 32 H 1.00900 * 110.99846 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0464 1.4001 5 1 3.5473 1.4404 -0.7000 6 1 1.4471 2.6527 -0.6999 7 6 2.0091 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0001 9 8 1.3346 -2.3691 -0.0005 10 6 2.1129 -3.5675 -0.0005 11 1 3.0571 -3.3874 0.5132 12 6 2.3906 -3.9952 -1.4431 13 6 1.0652 -4.2478 -2.1643 14 6 0.2953 -5.3560 -1.4430 15 6 0.0175 -4.9284 -0.0005 16 6 1.3431 -4.6756 0.7207 17 1 1.9366 -5.5899 0.7202 18 6 1.0653 -4.2479 2.1632 19 7 0.4329 -5.3572 2.8896 20 1 -0.4849 -0.8401 -0.0004 21 1 2.9391 -3.2057 -1.9570 22 1 2.9847 -4.9090 -1.4431 23 1 1.2630 -4.5530 -3.1919 24 1 0.4714 -3.3338 -2.1642 25 1 0.8890 -6.2702 -1.4431 26 1 -0.6488 -5.5364 -1.9571 27 1 -0.5313 -5.7177 0.5132 28 1 -0.5761 -4.0143 -0.0005 29 1 2.0035 -3.9825 2.6505 30 1 0.3985 -3.3857 2.1645 31 1 1.0030 -6.1886 2.8477 32 1 0.2396 -5.0996 3.8459 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084242178.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:59 Heat of formation + Delta-G solvation = -66.097712 kcal Electronic energy + Delta-G solvation = -13615.037809 eV Core-core repulsion = 11381.677628 eV Total energy + Delta-G solvation = -2233.360181 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.67300 -35.18528 -34.06660 -31.52739 -29.71646 -29.00605 -24.10554 -23.82756 -21.72670 -20.48648 -19.08155 -17.55803 -15.81616 -14.78904 -14.63019 -14.38178 -13.82834 -13.64173 -13.55708 -13.10799 -12.48067 -12.03712 -11.40592 -11.31271 -11.18167 -10.86295 -10.34562 -10.28025 -10.17545 -10.12309 -9.70539 -9.54315 -9.18178 -8.94146 -8.34460 -7.86574 -6.21132 -3.51017 3.42476 3.48187 3.62480 4.48446 4.87268 5.20330 5.34256 5.45085 5.55745 5.70174 5.74058 5.87933 5.94065 6.02634 6.17692 6.23192 6.24923 6.38996 6.49702 6.61180 6.67235 6.84026 6.90732 6.97505 7.05501 7.23151 7.42668 7.70569 7.76968 8.92896 9.53169 10.19432 11.26918 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.035777 B = 0.011896 C = 0.010258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.446253 B = 2353.203041 C = 2728.926379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 1.089 2.911 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.443 4.443 8 H 0.049 0.951 9 O -0.299 6.299 10 C 0.109 3.891 11 H 0.033 0.967 12 C -0.134 4.134 13 C -0.110 4.110 14 C -0.115 4.115 15 C -0.098 4.098 16 C -0.074 4.074 17 H 0.059 0.941 18 C 0.070 3.930 19 N -0.850 5.850 20 H 0.275 0.725 21 H 0.060 0.940 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.019 0.981 30 H 0.086 0.914 31 H 0.330 0.670 32 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.313 -9.507 1.023 10.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.208 4.208 3 Si 0.917 3.083 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.522 4.522 8 H 0.066 0.934 9 O -0.215 6.215 10 C 0.049 3.951 11 H 0.051 0.949 12 C -0.172 4.172 13 C -0.148 4.148 14 C -0.152 4.152 15 C -0.135 4.135 16 C -0.093 4.093 17 H 0.078 0.922 18 C -0.060 4.060 19 N -0.378 5.378 20 H 0.085 0.915 21 H 0.078 0.922 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.037 0.963 30 H 0.104 0.896 31 H 0.142 0.858 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.350 -7.775 0.481 8.136 hybrid contribution 1.561 -1.693 0.584 2.375 sum 3.910 -9.468 1.065 10.299 Atomic orbital electron populations 1.70536 1.06168 1.30726 1.48173 1.25902 0.97116 1.00124 0.97675 0.83176 0.73933 0.74623 0.76594 1.21696 1.21791 1.20743 1.21737 0.91011 0.84401 1.55084 0.93368 1.85384 1.32310 1.10591 1.93200 1.21615 0.93133 0.87295 0.93009 0.94861 1.21987 0.97151 0.99673 0.98424 1.21364 0.96987 0.99446 0.96981 1.21519 0.99232 0.97714 0.96761 1.21334 0.96761 1.01701 0.93729 1.21178 0.97299 0.96775 0.94070 0.92242 1.21773 0.97162 0.93859 0.93181 1.58788 1.52796 1.07163 1.19027 0.91461 0.92156 0.93427 0.93680 0.90725 0.93324 0.92883 0.92129 0.91099 0.96317 0.89596 0.85844 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.04 13.70 55.48 0.76 -28.28 16 2 C -0.01 -0.24 5.49 -17.51 -0.10 -0.34 16 3 Si 1.09 25.88 29.92 -169.99 -5.09 20.80 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.44 -12.91 9.77 30.88 0.30 -12.61 16 8 H 0.05 1.38 7.64 -52.49 -0.40 0.98 16 9 O -0.30 -8.10 6.90 -16.49 -0.11 -8.21 16 10 C 0.11 2.39 2.39 -26.74 -0.06 2.32 16 11 H 0.03 0.75 7.80 -51.93 -0.41 0.34 16 12 C -0.13 -2.64 5.63 -26.73 -0.15 -2.79 16 13 C -0.11 -2.07 5.78 -26.73 -0.15 -2.23 16 14 C -0.11 -1.92 5.92 -26.73 -0.16 -2.08 16 15 C -0.10 -1.80 4.95 -26.73 -0.13 -1.93 16 16 C -0.07 -1.37 2.16 -90.62 -0.20 -1.57 16 17 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 18 C 0.07 1.29 5.96 -3.82 -0.02 1.26 16 19 N -0.85 -12.40 9.08 -10.37 -0.09 -12.50 16 20 H 0.28 8.92 7.97 -40.82 -0.33 8.60 16 21 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.07 1.66 7.68 -51.93 -0.40 1.26 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 1.04 7.75 -51.93 -0.40 0.63 16 28 H 0.07 1.54 7.68 -51.93 -0.40 1.14 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 1.88 7.84 -51.93 -0.41 1.47 16 31 H 0.33 4.13 8.99 -39.29 -0.35 3.78 16 32 H 0.34 4.30 9.08 -39.29 -0.36 3.95 16 LS Contribution 258.40 15.07 3.89 3.89 Total: -1.00 -31.46 258.40 -6.52 -37.98 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.20 Total: 6.28 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -0.67 Total: -19.95 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.67 Total: -40.78 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.11 Total: -8.21 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.09 Total: 20.80 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.46 -6.52 -37.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084242178.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.122 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds