Wall clock time and date at job start Mon Mar 30 2020 01:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86800 * 119.99580 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00394 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99883 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00490 * 3 2 1 7 7 C 1.38628 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00431 * 180.02562 * 7 2 1 9 9 O 1.34925 * 120.00257 * 359.97438 * 7 2 1 10 10 C 1.42899 * 117.00610 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.46787 * 29.99288 * 10 9 7 12 12 C 1.53000 * 109.46899 * 270.00030 * 10 9 7 13 13 C 1.53001 * 109.47240 * 299.99985 * 12 10 9 14 14 C 1.53005 * 109.46775 * 299.99956 * 13 12 10 15 15 C 1.53000 * 109.47200 * 60.00020 * 14 13 12 16 16 C 1.52992 * 109.47457 * 150.00025 * 10 9 7 17 17 H 1.09004 * 109.47000 * 179.97438 * 16 10 9 18 18 C 1.53000 * 109.47070 * 299.99901 * 16 10 9 19 19 N 1.46907 * 109.47013 * 184.99825 * 18 16 10 20 20 H 0.97000 * 119.99271 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.47457 * 59.99743 * 12 10 9 22 22 H 1.08996 * 109.47335 * 179.97438 * 12 10 9 23 23 H 1.09003 * 109.47275 * 180.02562 * 13 12 10 24 24 H 1.09000 * 109.47599 * 59.99390 * 13 12 10 25 25 H 1.09004 * 109.46998 * 299.99794 * 14 13 12 26 26 H 1.08999 * 109.47240 * 180.02562 * 14 13 12 27 27 H 1.09003 * 109.47021 * 179.97438 * 15 14 13 28 28 H 1.08996 * 109.46809 * 59.99717 * 15 14 13 29 29 H 1.08997 * 109.47158 * 304.99776 * 18 16 10 30 30 H 1.09001 * 109.46982 * 65.00239 * 18 16 10 31 31 H 1.00899 * 110.99634 * 56.05239 * 19 18 16 32 32 H 1.00900 * 110.99846 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0464 1.4001 5 1 3.5473 1.4404 -0.7000 6 1 1.4471 2.6527 -0.6999 7 6 2.0091 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0001 9 8 1.3346 -2.3691 -0.0005 10 6 2.1129 -3.5675 -0.0005 11 1 3.0571 -3.3874 0.5132 12 6 2.3906 -3.9952 -1.4431 13 6 1.0652 -4.2478 -2.1643 14 6 0.2953 -5.3560 -1.4430 15 6 0.0175 -4.9284 -0.0005 16 6 1.3431 -4.6756 0.7207 17 1 1.9366 -5.5899 0.7202 18 6 1.0653 -4.2479 2.1632 19 7 0.4329 -5.3572 2.8896 20 1 -0.4849 -0.8401 -0.0004 21 1 2.9391 -3.2057 -1.9570 22 1 2.9847 -4.9090 -1.4431 23 1 1.2630 -4.5530 -3.1919 24 1 0.4714 -3.3338 -2.1642 25 1 0.8890 -6.2702 -1.4431 26 1 -0.6488 -5.5364 -1.9571 27 1 -0.5313 -5.7177 0.5132 28 1 -0.5761 -4.0143 -0.0005 29 1 2.0035 -3.9825 2.6505 30 1 0.3985 -3.3857 2.1645 31 1 1.0030 -6.1886 2.8477 32 1 0.2396 -5.0996 3.8459 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084242178.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:58 Heat of formation + Delta-G solvation = -88.695828 kcal Electronic energy + Delta-G solvation = -13616.017737 eV Core-core repulsion = 11381.677628 eV Total energy + Delta-G solvation = -2234.340108 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.33583 -37.09160 -35.49094 -33.69647 -31.17344 -30.65722 -26.23160 -25.46123 -23.31056 -21.99217 -20.83058 -19.59532 -17.31985 -16.71819 -16.21240 -16.03034 -15.52146 -15.23277 -15.19152 -14.82420 -14.07146 -13.74198 -12.96976 -12.91401 -12.76888 -12.68471 -12.09543 -11.97236 -11.90744 -11.79490 -11.54051 -11.27533 -10.89592 -10.74927 -10.04723 -9.62045 -8.58752 -5.84980 1.49852 1.62432 1.77525 2.52543 3.23984 3.49937 3.61475 3.87805 3.99339 4.05554 4.21403 4.36921 4.44246 4.54685 4.63486 4.65649 4.72146 4.89220 4.98386 5.07997 5.12383 5.31227 5.33006 5.43398 5.45191 5.52304 5.67657 6.16802 6.54178 6.63675 7.26319 8.03700 8.90614 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.035777 B = 0.011896 C = 0.010258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.446253 B = 2353.203041 C = 2728.926379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.068 4.068 3 Si 1.137 2.863 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.281 1.281 7 C -0.444 4.444 8 H 0.050 0.950 9 O -0.327 6.327 10 C 0.095 3.905 11 H 0.024 0.976 12 C -0.131 4.131 13 C -0.108 4.108 14 C -0.108 4.108 15 C -0.092 4.092 16 C -0.069 4.069 17 H 0.097 0.903 18 C 0.080 3.920 19 N -0.843 5.843 20 H 0.254 0.746 21 H 0.037 0.963 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.025 0.975 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.022 0.978 29 H 0.016 0.984 30 H 0.037 0.963 31 H 0.349 0.651 32 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -11.280 0.943 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.260 4.260 3 Si 0.957 3.043 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.206 1.206 7 C -0.523 4.523 8 H 0.067 0.933 9 O -0.243 6.243 10 C 0.036 3.964 11 H 0.042 0.958 12 C -0.168 4.168 13 C -0.146 4.146 14 C -0.146 4.146 15 C -0.130 4.130 16 C -0.087 4.087 17 H 0.115 0.885 18 C -0.051 4.051 19 N -0.374 5.374 20 H 0.062 0.938 21 H 0.056 0.944 22 H 0.106 0.894 23 H 0.090 0.910 24 H 0.044 0.956 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.041 0.959 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.162 0.838 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.727 -9.598 0.412 10.304 hybrid contribution 1.160 -1.264 0.629 1.828 sum 4.887 -10.862 1.042 11.956 Atomic orbital electron populations 1.70690 1.07422 1.29279 1.51269 1.27702 0.97147 1.04234 0.96884 0.82605 0.73593 0.70316 0.77742 1.19861 1.19295 1.20622 1.22081 0.91180 0.85606 1.53476 0.93257 1.85374 1.33917 1.11556 1.93462 1.22028 0.92850 0.86469 0.95069 0.95771 1.21953 0.97888 1.00633 0.96375 1.21334 0.96075 0.98261 0.98934 1.21505 1.00182 0.97884 0.94990 1.21264 0.96160 1.00006 0.95525 1.21182 0.97436 0.96670 0.93441 0.88540 1.21475 0.95971 0.93590 0.94023 1.58644 1.52526 1.06542 1.19669 0.93759 0.94379 0.89434 0.90995 0.95628 0.89876 0.91600 0.90303 0.95873 0.96575 0.94387 0.83772 0.83984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.29 13.70 21.61 0.30 -62.00 16 2 C -0.07 -4.10 5.49 84.82 0.47 -3.63 16 3 Si 1.14 52.25 29.92 68.60 2.05 54.31 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.44 -26.61 9.77 67.91 0.66 -25.95 16 8 H 0.05 2.86 7.64 -2.91 -0.02 2.84 16 9 O -0.33 -18.41 6.90 -81.94 -0.57 -18.97 16 10 C 0.09 4.13 2.39 30.59 0.07 4.20 16 11 H 0.02 1.08 7.80 -2.39 -0.02 1.06 16 12 C -0.13 -4.95 5.63 30.59 0.17 -4.78 16 13 C -0.11 -3.96 5.78 30.60 0.18 -3.78 16 14 C -0.11 -3.34 5.92 30.60 0.18 -3.15 16 15 C -0.09 -3.29 4.95 30.60 0.15 -3.13 16 16 C -0.07 -2.43 2.16 -10.80 -0.02 -2.46 16 17 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 18 C 0.08 2.92 5.96 86.30 0.51 3.44 16 19 N -0.84 -23.02 9.08 -186.71 -1.70 -24.71 16 20 H 0.25 17.47 7.97 -92.71 -0.74 16.73 16 21 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 22 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 23 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.02 1.16 7.68 -2.39 -0.02 1.14 16 25 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.08 2.52 7.75 -2.39 -0.02 2.50 16 28 H 0.02 1.03 7.68 -2.39 -0.02 1.01 16 29 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.04 1.74 7.84 -2.39 -0.02 1.72 16 31 H 0.35 7.55 8.99 -89.69 -0.81 6.75 16 32 H 0.35 8.34 9.08 -89.69 -0.81 7.53 16 Total: -1.00 -71.27 258.40 1.97 -69.30 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -0.49 Total: 21.32 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 2.38 Total: -39.25 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -1.40 Total: -86.71 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.57 Total: -18.97 kcal Atomic # 14 Polarization: 52.25 SS G_CDS: 2.05 Total: 54.31 kcal Total: -71.27 1.97 -69.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084242178.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.397 kcal (2) G-P(sol) polarization free energy of solvation -71.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds