Wall clock time and date at job start Mon Mar 30 2020 01:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99760 * 2 1 4 4 H 1.48501 * 109.46603 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47196 * 299.99921 * 3 2 1 6 6 H 1.48503 * 109.47145 * 60.00036 * 3 2 1 7 7 C 1.38805 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00272 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99874 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46907 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.05763 * 306.42051 * 11 10 9 13 13 C 1.54266 * 110.03279 * 67.83511 * 11 10 9 14 14 C 1.54893 * 104.19500 * 142.89573 * 13 11 10 15 15 C 1.54887 * 102.74533 * 322.05712 * 14 13 11 16 16 C 1.53872 * 110.03132 * 185.00374 * 11 10 9 17 17 H 1.09003 * 110.03622 * 121.42915 * 16 11 10 18 18 C 1.53001 * 110.07640 * 0.02562 * 16 11 10 19 19 O 1.42894 * 109.47570 * 176.35808 * 18 16 11 20 20 H 0.97004 * 120.00376 * 359.97438 * 1 2 3 21 21 H 0.96997 * 119.99868 * 359.97438 * 9 7 2 22 22 H 1.08998 * 109.46849 * 60.00221 * 10 9 7 23 23 H 1.08997 * 109.47385 * 300.00152 * 10 9 7 24 24 H 1.09002 * 110.48438 * 261.57191 * 13 11 10 25 25 H 1.08998 * 110.48431 * 24.08020 * 13 11 10 26 26 H 1.09001 * 110.75228 * 203.74448 * 14 13 11 27 27 H 1.09000 * 110.75571 * 80.37081 * 14 13 11 28 28 H 1.09001 * 110.48816 * 279.26329 * 15 14 13 29 29 H 1.09004 * 110.48531 * 156.62545 * 15 14 13 30 30 H 1.09008 * 109.46971 * 296.35838 * 18 16 11 31 31 H 1.09000 * 109.47116 * 56.35447 * 18 16 11 32 32 H 0.96700 * 114.00000 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 1 0.3585 -4.7090 0.8236 13 6 0.3053 -4.8657 -1.3426 14 6 0.1427 -6.3780 -1.6354 15 6 1.4881 -6.9677 -1.1444 16 6 1.8159 -6.1562 0.1260 17 1 1.4756 -6.6941 1.0109 18 6 3.3226 -5.9048 0.2132 19 8 4.0017 -7.1457 0.4149 20 1 -0.4851 0.8400 0.0004 21 1 0.3555 -2.3880 0.0005 22 1 2.6847 -3.7145 0.8905 23 1 2.6847 -3.7145 -0.8894 24 1 -0.6701 -4.3888 -1.2462 25 1 0.8888 -4.3838 -2.1271 26 1 0.0111 -6.5528 -2.7032 27 1 -0.6908 -6.7936 -1.0691 28 1 2.2636 -6.8274 -1.8974 29 1 1.3760 -8.0249 -0.9034 30 1 3.6689 -5.4475 -0.7137 31 1 3.5316 -5.2363 1.0484 32 1 4.9629 -7.0621 0.4794 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084315872.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:41 Heat of formation + Delta-G solvation = -58.132108 kcal Electronic energy + Delta-G solvation = -13069.810152 eV Core-core repulsion = 10836.795386 eV Total energy + Delta-G solvation = -2233.014766 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.95756 -36.03981 -34.24037 -31.40892 -29.90365 -28.35453 -24.58338 -23.98858 -22.23046 -20.38542 -18.44780 -17.38600 -16.79233 -15.67945 -14.90331 -14.39327 -14.27992 -13.54523 -13.37224 -12.99203 -12.74355 -12.05149 -11.75027 -11.14452 -10.85760 -10.74275 -10.68838 -10.57850 -10.33500 -10.28548 -10.09849 -9.74707 -9.67192 -9.63316 -8.82115 -6.88163 -5.74792 -3.02933 3.43777 3.49089 3.51526 4.36512 4.59998 4.86760 4.90343 5.15196 5.53526 5.57184 5.61684 5.68248 5.73015 5.81972 5.95549 6.01929 6.07407 6.15359 6.19573 6.35623 6.39482 6.58514 6.59891 6.70719 6.83643 6.98410 7.70544 7.74860 8.44485 9.55460 10.14914 10.49735 11.48284 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047408 B = 0.008275 C = 0.007309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.478786 B = 3382.939077 C = 3830.115285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.155 3.845 11 C -0.094 4.094 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.128 4.128 15 C -0.110 4.110 16 C -0.083 4.083 17 H 0.073 0.927 18 C 0.076 3.924 19 O -0.580 6.580 20 H 0.254 0.746 21 H 0.384 0.616 22 H 0.020 0.980 23 H 0.020 0.980 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.936 -12.595 -1.346 13.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.027 3.973 11 C -0.113 4.113 12 H 0.093 0.907 13 C -0.149 4.149 14 C -0.166 4.166 15 C -0.147 4.147 16 C -0.102 4.102 17 H 0.092 0.908 18 C -0.002 4.002 19 O -0.385 6.385 20 H 0.064 0.936 21 H 0.217 0.783 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.461 -12.694 -1.364 13.228 hybrid contribution 0.709 1.286 0.062 1.470 sum 4.170 -11.408 -1.302 12.216 Atomic orbital electron populations 1.69672 1.05093 1.25472 1.57976 1.24740 0.95531 0.97672 1.03186 0.86126 0.78752 0.84197 0.77188 1.20606 1.21876 1.21881 1.19278 0.91019 0.84265 1.42350 0.91246 1.42403 1.05923 0.99976 1.89308 1.20926 0.93319 0.85514 0.97521 1.21944 0.97519 0.93432 0.98378 0.90744 1.22357 1.00555 0.94999 0.97029 1.22550 0.97265 0.96492 1.00288 1.22325 0.97093 0.98662 0.96645 1.21718 0.93165 0.96421 0.98880 0.90842 1.22565 0.92633 0.84829 1.00130 1.86437 1.23236 1.32616 1.96234 0.93594 0.78259 0.96285 0.96266 0.91572 0.91218 0.92017 0.91913 0.91825 0.92132 0.93129 0.92787 0.78004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.88 5.45 -59.91 -0.33 -19.21 16 10 C 0.15 3.16 4.37 -4.04 -0.02 3.14 16 11 C -0.09 -1.60 2.96 -89.50 -0.26 -1.86 16 12 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.11 -1.83 6.09 -25.07 -0.15 -1.98 16 14 C -0.13 -1.72 6.91 -24.74 -0.17 -1.89 16 15 C -0.11 -1.48 6.19 -25.07 -0.16 -1.64 16 16 C -0.08 -1.22 3.19 -89.50 -0.29 -1.51 16 17 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 18 C 0.08 1.07 5.14 37.16 0.19 1.26 16 19 O -0.58 -7.54 13.48 -35.23 -0.47 -8.02 16 20 H 0.25 7.49 8.31 -40.82 -0.34 7.16 16 21 H 0.38 10.39 7.55 -40.82 -0.31 10.09 16 22 H 0.02 0.40 6.33 -51.93 -0.33 0.07 16 23 H 0.02 0.40 7.01 -51.93 -0.36 0.04 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.07 1.23 7.76 -51.93 -0.40 0.82 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.86 7.78 -51.93 -0.40 0.46 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.72 7.00 -51.92 -0.36 0.35 16 31 H 0.05 0.78 6.39 -51.93 -0.33 0.45 16 32 H 0.37 3.16 9.12 45.56 0.42 3.58 16 LS Contribution 257.13 15.07 3.87 3.87 Total: -1.00 -31.40 257.13 -6.50 -37.90 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.17 Total: 7.63 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -1.10 Total: -11.94 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.40 Total: -47.06 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.47 Total: -8.02 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.40 -6.50 -37.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084315872.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.230 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds