Wall clock time and date at job start Mon Mar 30 2020 01:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99760 * 2 1 4 4 H 1.48501 * 109.46603 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47196 * 299.99921 * 3 2 1 6 6 H 1.48503 * 109.47145 * 60.00036 * 3 2 1 7 7 C 1.38805 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00272 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99874 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46907 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.05763 * 306.42051 * 11 10 9 13 13 C 1.54266 * 110.03279 * 67.83511 * 11 10 9 14 14 C 1.54893 * 104.19500 * 142.89573 * 13 11 10 15 15 C 1.54887 * 102.74533 * 322.05712 * 14 13 11 16 16 C 1.53872 * 110.03132 * 185.00374 * 11 10 9 17 17 H 1.09003 * 110.03622 * 121.42915 * 16 11 10 18 18 C 1.53001 * 110.07640 * 0.02562 * 16 11 10 19 19 O 1.42894 * 109.47570 * 176.35808 * 18 16 11 20 20 H 0.97004 * 120.00376 * 359.97438 * 1 2 3 21 21 H 0.96997 * 119.99868 * 359.97438 * 9 7 2 22 22 H 1.08998 * 109.46849 * 60.00221 * 10 9 7 23 23 H 1.08997 * 109.47385 * 300.00152 * 10 9 7 24 24 H 1.09002 * 110.48438 * 261.57191 * 13 11 10 25 25 H 1.08998 * 110.48431 * 24.08020 * 13 11 10 26 26 H 1.09001 * 110.75228 * 203.74448 * 14 13 11 27 27 H 1.09000 * 110.75571 * 80.37081 * 14 13 11 28 28 H 1.09001 * 110.48816 * 279.26329 * 15 14 13 29 29 H 1.09004 * 110.48531 * 156.62545 * 15 14 13 30 30 H 1.09008 * 109.46971 * 296.35838 * 18 16 11 31 31 H 1.09000 * 109.47116 * 56.35447 * 18 16 11 32 32 H 0.96700 * 114.00000 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 1 0.3585 -4.7090 0.8236 13 6 0.3053 -4.8657 -1.3426 14 6 0.1427 -6.3780 -1.6354 15 6 1.4881 -6.9677 -1.1444 16 6 1.8159 -6.1562 0.1260 17 1 1.4756 -6.6941 1.0109 18 6 3.3226 -5.9048 0.2132 19 8 4.0017 -7.1457 0.4149 20 1 -0.4851 0.8400 0.0004 21 1 0.3555 -2.3880 0.0005 22 1 2.6847 -3.7145 0.8905 23 1 2.6847 -3.7145 -0.8894 24 1 -0.6701 -4.3888 -1.2462 25 1 0.8888 -4.3838 -2.1271 26 1 0.0111 -6.5528 -2.7032 27 1 -0.6908 -6.7936 -1.0691 28 1 2.2636 -6.8274 -1.8974 29 1 1.3760 -8.0249 -0.9034 30 1 3.6689 -5.4475 -0.7137 31 1 3.5316 -5.2363 1.0484 32 1 4.9629 -7.0621 0.4794 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084315872.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:41 Heat of formation + Delta-G solvation = -80.901229 kcal Electronic energy + Delta-G solvation = -13070.797495 eV Core-core repulsion = 10836.795386 eV Total energy + Delta-G solvation = -2234.002109 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.22617 -37.17162 -36.10823 -33.30784 -31.20136 -29.92192 -26.37551 -25.21817 -24.04492 -21.56512 -19.94901 -18.97272 -18.28940 -16.94667 -16.52778 -16.01573 -15.50099 -15.18116 -14.97991 -14.58130 -14.23508 -13.32638 -13.28411 -12.95048 -12.81353 -12.14578 -12.11871 -11.88217 -11.80756 -11.70002 -11.57561 -11.46835 -11.14062 -11.04551 -10.64959 -8.98655 -7.95914 -5.24727 1.46363 1.47425 1.57487 2.55120 3.31367 3.37229 3.63306 3.68866 3.95868 4.16745 4.35608 4.44303 4.50485 4.55858 4.63239 4.71284 4.83238 4.86182 4.95690 5.03089 5.14024 5.20017 5.30799 5.39631 5.48661 5.52084 5.54290 6.26663 6.92306 7.32573 8.09341 8.32848 9.28043 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047408 B = 0.008275 C = 0.007309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.478786 B = 3382.939077 C = 3830.115285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.156 3.844 11 C -0.088 4.088 12 H 0.064 0.936 13 C -0.113 4.113 14 C -0.118 4.118 15 C -0.104 4.104 16 C -0.081 4.081 17 H 0.077 0.923 18 C 0.081 3.919 19 O -0.587 6.587 20 H 0.251 0.749 21 H 0.373 0.627 22 H 0.023 0.977 23 H 0.022 0.978 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.962 -13.597 -1.533 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.388 5.388 10 C 0.030 3.970 11 C -0.107 4.107 12 H 0.083 0.917 13 C -0.151 4.151 14 C -0.156 4.156 15 C -0.142 4.142 16 C -0.100 4.100 17 H 0.096 0.904 18 C 0.003 3.997 19 O -0.395 6.395 20 H 0.060 0.940 21 H 0.205 0.795 22 H 0.041 0.959 23 H 0.040 0.960 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.538 -13.733 -1.549 14.547 hybrid contribution 0.435 1.531 0.134 1.597 sum 4.973 -12.203 -1.416 13.253 Atomic orbital electron populations 1.69829 1.06648 1.26018 1.59586 1.25594 0.96442 1.01178 1.03744 0.85059 0.78226 0.79682 0.76708 1.18984 1.21958 1.21976 1.19687 0.91513 0.85421 1.41080 0.90662 1.42628 1.05679 1.01226 1.89263 1.21072 0.93835 0.84684 0.97435 1.21859 0.96875 0.93488 0.98494 0.91708 1.22314 0.99369 0.97294 0.96083 1.22511 0.97782 0.93758 1.01528 1.22298 0.96937 0.99153 0.95778 1.21682 0.93429 0.94949 0.99927 0.90420 1.22387 0.92366 0.85216 0.99692 1.86384 1.25157 1.31772 1.96149 0.93988 0.79479 0.95947 0.96042 0.92908 0.92840 0.90494 0.90765 0.91758 0.90674 0.93336 0.93545 0.75647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.25 -13.95 9.99 84.03 0.84 -13.11 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.75 -38.87 5.45 -343.45 -1.87 -40.74 16 10 C 0.16 6.34 4.37 86.38 0.38 6.72 16 11 C -0.09 -2.96 2.96 -10.07 -0.03 -2.99 16 12 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 13 C -0.11 -3.64 6.09 31.67 0.19 -3.45 16 14 C -0.12 -2.91 6.91 31.89 0.22 -2.69 16 15 C -0.10 -2.54 6.19 31.67 0.20 -2.34 16 16 C -0.08 -2.24 3.19 -10.07 -0.03 -2.27 16 17 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 18 C 0.08 2.14 5.14 71.98 0.37 2.51 16 19 O -0.59 -13.77 13.48 -148.98 -2.01 -15.78 16 20 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 21 H 0.37 20.72 7.55 -92.71 -0.70 20.02 16 22 H 0.02 0.92 6.33 -2.39 -0.02 0.90 16 23 H 0.02 0.88 7.01 -2.39 -0.02 0.86 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.05 1.88 7.76 -2.39 -0.02 1.86 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 1.57 7.78 -2.39 -0.02 1.55 16 29 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.05 1.30 7.00 -2.38 -0.02 1.28 16 31 H 0.05 1.29 6.39 -2.39 -0.02 1.27 16 32 H 0.39 5.64 9.12 -74.06 -0.68 4.97 16 Total: -1.00 -65.77 257.13 0.77 -65.00 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.27 Total: 24.57 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 2.60 Total: -21.69 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -1.59 Total: -100.70 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -2.01 Total: -15.78 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -65.77 0.77 -65.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084315872.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.899 kcal (2) G-P(sol) polarization free energy of solvation -65.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds