Wall clock time and date at job start Mon Mar 30 2020 01:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99532 * 2 1 4 4 H 1.48503 * 109.46840 * 269.99544 * 3 2 1 5 5 H 1.48492 * 109.47570 * 29.99849 * 3 2 1 6 6 H 1.48502 * 109.47035 * 149.99915 * 3 2 1 7 7 C 1.38806 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99790 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00425 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00244 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46984 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.05885 * 53.58606 * 11 10 9 13 13 C 1.54265 * 110.03434 * 292.16712 * 11 10 9 14 14 C 1.54890 * 104.19704 * 264.32567 * 13 11 10 15 15 C 1.54884 * 102.75091 * 322.05903 * 14 13 11 16 16 C 1.53877 * 110.03114 * 175.00242 * 11 10 9 17 17 H 1.08999 * 110.03260 * 359.94839 * 16 11 10 18 18 C 1.52999 * 110.03099 * 238.57102 * 16 11 10 19 19 O 1.42903 * 109.47256 * 175.00300 * 18 16 11 20 20 H 0.97000 * 119.99833 * 0.02562 * 1 2 3 21 21 H 0.97004 * 119.99702 * 0.02562 * 9 7 2 22 22 H 1.09003 * 109.46956 * 60.00467 * 10 9 7 23 23 H 1.09000 * 109.47190 * 300.00174 * 10 9 7 24 24 H 1.09004 * 110.48472 * 23.00494 * 13 11 10 25 25 H 1.08996 * 110.48680 * 145.51436 * 13 11 10 26 26 H 1.09000 * 110.75326 * 80.37455 * 14 13 11 27 27 H 1.08997 * 110.75458 * 203.55406 * 14 13 11 28 28 H 1.09003 * 110.48519 * 279.26852 * 15 14 13 29 29 H 1.08992 * 110.48804 * 156.61975 * 15 14 13 30 30 H 1.08997 * 109.47286 * 54.99861 * 18 16 11 31 31 H 1.09008 * 109.47201 * 294.99641 * 18 16 11 32 32 H 0.96700 * 114.00311 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6164 -2.1911 0.0000 12 1 5.8729 -1.5252 0.8240 13 6 6.0361 -1.5569 -1.3422 14 6 6.5330 -2.7546 -2.1894 15 6 7.2650 -3.6323 -1.1441 16 6 6.3978 -3.5107 0.1259 17 1 5.7054 -4.3502 0.1880 18 6 7.2900 -3.4749 1.3684 19 8 7.9207 -4.7459 1.5387 20 1 -0.4850 0.8401 -0.0004 21 1 3.8647 -0.3620 -0.0004 22 1 3.8486 -3.0425 -0.8898 23 1 3.8492 -3.0422 0.8902 24 1 5.1819 -1.0787 -1.8217 25 1 6.8392 -0.8361 -1.1889 26 1 5.6924 -3.2939 -2.6260 27 1 7.2203 -2.4195 -2.9661 28 1 8.2683 -3.2484 -0.9591 29 1 7.3078 -4.6686 -1.4790 30 1 6.6830 -3.2501 2.2453 31 1 8.0518 -2.7048 1.2466 32 1 8.5026 -4.7961 2.3094 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084315873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:43 Heat of formation + Delta-G solvation = -58.261300 kcal Electronic energy + Delta-G solvation = -13020.443793 eV Core-core repulsion = 10787.423425 eV Total energy + Delta-G solvation = -2233.020368 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.94504 -36.33288 -34.33703 -31.43648 -29.98206 -28.75509 -25.43040 -23.55396 -21.84220 -20.00223 -19.35266 -17.75602 -16.93053 -15.53726 -15.24726 -14.58809 -14.23512 -13.82675 -13.47751 -12.82379 -12.60581 -12.29559 -11.83614 -11.61515 -10.94628 -10.83081 -10.76423 -10.56900 -10.39042 -10.37113 -10.26801 -9.99777 -9.84902 -9.55003 -8.85843 -7.18849 -5.74118 -3.08946 3.38523 3.41347 3.46189 4.17390 4.61326 4.76274 4.81327 5.00317 5.34474 5.42029 5.52533 5.55524 5.60839 5.65547 5.82814 5.85955 5.93943 5.99874 6.10206 6.15934 6.29587 6.43968 6.55401 6.60033 6.77183 6.88312 7.57892 8.03324 8.45354 9.24935 9.97360 10.18036 11.44558 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.048560 B = 0.008320 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.466695 B = 3364.548214 C = 3505.317708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.756 5.756 10 C 0.165 3.835 11 C -0.096 4.096 12 H 0.070 0.930 13 C -0.122 4.122 14 C -0.125 4.125 15 C -0.110 4.110 16 C -0.086 4.086 17 H 0.082 0.918 18 C 0.082 3.918 19 O -0.575 6.575 20 H 0.259 0.741 21 H 0.360 0.640 22 H 0.029 0.971 23 H 0.025 0.975 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.848 -5.254 0.303 17.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.402 5.402 10 C 0.038 3.962 11 C -0.115 4.115 12 H 0.088 0.912 13 C -0.159 4.159 14 C -0.162 4.162 15 C -0.147 4.147 16 C -0.105 4.105 17 H 0.100 0.900 18 C 0.005 3.995 19 O -0.379 6.379 20 H 0.069 0.931 21 H 0.193 0.807 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 16.257 -5.471 -0.236 17.154 hybrid contribution 0.798 1.436 0.612 1.753 sum 17.054 -4.035 0.376 17.529 Atomic orbital electron populations 1.69706 1.05087 1.25746 1.57855 1.24670 0.95239 0.97162 1.02215 0.86547 0.79203 0.85027 0.77791 1.21060 1.21743 1.20372 1.19086 0.80736 0.94738 1.42642 0.89253 1.42741 1.03985 1.02317 1.91116 1.20704 0.87889 0.89106 0.98506 1.21955 0.96313 0.95247 0.97983 0.91195 1.22429 1.00848 0.97212 0.95428 1.22507 0.99700 0.96738 0.97297 1.22320 0.98128 0.99718 0.94551 1.21766 0.96459 0.98707 0.93539 0.89975 1.22380 0.94878 0.84477 0.97777 1.86490 1.65263 1.34588 1.51597 0.93110 0.80687 0.95311 0.95719 0.90393 0.92367 0.91305 0.92083 0.92080 0.91873 0.93537 0.93856 0.77969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.88 13.97 55.49 0.78 -29.11 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 22.43 27.74 -169.99 -4.71 17.72 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.62 6.52 56.52 0.37 -6.26 16 7 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 8 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 9 N -0.76 -18.43 4.95 -59.91 -0.30 -18.72 16 10 C 0.16 3.30 5.32 -4.04 -0.02 3.28 16 11 C -0.10 -1.52 2.62 -89.50 -0.23 -1.76 16 12 H 0.07 1.10 7.67 -51.93 -0.40 0.71 16 13 C -0.12 -1.82 6.19 -25.07 -0.16 -1.98 16 14 C -0.12 -1.64 6.91 -24.74 -0.17 -1.81 16 15 C -0.11 -1.38 6.22 -25.07 -0.16 -1.54 16 16 C -0.09 -1.18 2.84 -89.50 -0.25 -1.44 16 17 H 0.08 1.22 7.67 -51.93 -0.40 0.83 16 18 C 0.08 0.99 6.09 37.16 0.23 1.22 16 19 O -0.57 -6.68 13.51 -35.23 -0.48 -7.16 16 20 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 21 H 0.36 8.53 5.34 -40.82 -0.22 8.31 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 1.34 7.42 -51.93 -0.39 0.96 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.72 7.76 -51.93 -0.40 0.32 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.47 8.00 -51.92 -0.42 0.06 16 32 H 0.37 2.56 9.12 45.56 0.42 2.97 16 LS Contribution 259.41 15.07 3.91 3.91 Total: -1.00 -32.52 259.41 -6.18 -38.69 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.35 Total: 5.90 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -1.02 Total: -11.23 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.48 Total: -47.83 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.48 Total: -7.16 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.52 -6.18 -38.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084315873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.568 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds