Wall clock time and date at job start Mon Mar 30 2020 01:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.01565 * 305.06387 * 11 10 9 13 13 C 1.53880 * 110.03278 * 66.45010 * 11 10 9 14 14 C 1.54271 * 106.59738 * 119.28587 * 13 11 10 15 15 C 1.54890 * 104.19427 * 23.60943 * 14 13 11 16 16 C 1.54265 * 110.03750 * 183.62099 * 11 10 9 17 17 H 1.09001 * 110.47802 * 335.78404 * 16 11 10 18 18 C 1.52995 * 110.48822 * 98.42427 * 16 11 10 19 19 O 1.42907 * 109.47260 * 185.00495 * 18 16 11 20 20 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 21 21 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 22 22 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 23 23 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 24 24 H 1.08993 * 110.03307 * 238.56968 * 13 11 10 25 25 H 1.09004 * 110.03056 * 359.95416 * 13 11 10 26 26 H 1.08996 * 110.48440 * 142.28773 * 14 13 11 27 27 H 1.08997 * 110.48722 * 264.93304 * 14 13 11 28 28 H 1.09001 * 110.75219 * 80.37527 * 15 14 13 29 29 H 1.08994 * 110.75706 * 203.73763 * 15 14 13 30 30 H 1.09005 * 109.47176 * 305.00326 * 18 16 11 31 31 H 1.09001 * 109.47026 * 65.00377 * 18 16 11 32 32 H 0.96694 * 113.99950 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.3741 -4.7211 0.8358 13 6 0.2830 -4.8447 -1.3278 14 6 0.5917 -6.2007 -1.9956 15 6 1.0078 -7.1177 -0.8187 16 6 1.8200 -6.1613 0.0893 17 1 2.8377 -6.0519 -0.2855 18 6 1.8310 -6.6724 1.5313 19 8 2.6333 -7.8522 1.6124 20 1 -0.4851 0.8400 0.0004 21 1 0.3556 -2.3881 -0.0016 22 1 2.6855 -3.7140 -0.8911 23 1 2.6842 -3.7148 0.8888 24 1 -0.7860 -4.7593 -1.1330 25 1 0.6117 -4.0278 -1.9704 26 1 -0.2969 -6.5936 -2.4897 27 1 1.4110 -6.0978 -2.7071 28 1 0.1300 -7.4955 -0.2945 29 1 1.6318 -7.9390 -1.1709 30 1 2.2457 -5.9054 2.1855 31 1 0.8123 -6.9037 1.8426 32 1 2.6852 -8.2323 2.5000 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084315874.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:44 Heat of formation + Delta-G solvation = -86.046047 kcal Electronic energy + Delta-G solvation = -12942.300612 eV Core-core repulsion = 10708.075406 eV Total energy + Delta-G solvation = -2234.225205 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.00333 -37.30640 -36.09399 -33.27747 -31.08288 -29.99195 -26.59016 -25.23462 -23.63688 -21.20188 -20.61222 -19.21724 -17.97653 -16.84498 -16.48357 -16.11935 -15.58083 -15.14864 -14.92046 -14.59864 -14.14249 -13.46517 -13.14882 -12.99947 -12.76617 -12.25925 -12.10837 -11.88874 -11.79035 -11.69134 -11.53411 -11.47028 -11.27063 -10.93173 -10.77940 -9.01314 -7.96363 -5.25511 1.45792 1.49293 1.55582 2.54849 3.27095 3.36477 3.66087 3.72057 3.98300 4.23075 4.32350 4.43579 4.46636 4.58964 4.65764 4.70369 4.79822 4.83350 4.98474 5.01739 5.16382 5.23589 5.30240 5.39869 5.47333 5.51164 5.56692 6.26005 6.94186 7.32110 8.08038 8.33000 9.27058 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051304 B = 0.007601 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.634766 B = 3682.631618 C = 4001.291173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.073 0.927 9 N -0.743 5.743 10 C 0.160 3.840 11 C -0.083 4.083 12 H 0.068 0.932 13 C -0.116 4.116 14 C -0.119 4.119 15 C -0.103 4.103 16 C -0.083 4.083 17 H 0.070 0.930 18 C 0.087 3.913 19 O -0.587 6.587 20 H 0.252 0.748 21 H 0.375 0.625 22 H 0.015 0.985 23 H 0.014 0.986 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 -14.967 1.027 15.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.091 0.909 9 N -0.386 5.386 10 C 0.033 3.967 11 C -0.102 4.102 12 H 0.086 0.914 13 C -0.154 4.154 14 C -0.156 4.156 15 C -0.140 4.140 16 C -0.103 4.103 17 H 0.089 0.911 18 C 0.009 3.991 19 O -0.395 6.395 20 H 0.061 0.939 21 H 0.207 0.793 22 H 0.032 0.968 23 H 0.032 0.968 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.126 -14.745 0.395 14.903 hybrid contribution -0.053 1.222 0.643 1.382 sum 2.072 -13.523 1.038 13.721 Atomic orbital electron populations 1.69809 1.06599 1.26250 1.59310 1.25582 0.96448 1.01122 1.03502 0.85190 0.77230 0.79010 0.78201 1.20427 1.21846 1.20338 1.19621 0.91477 0.85564 1.41654 0.90939 1.42555 1.05645 1.01053 1.89333 1.20879 0.93776 0.85015 0.96982 1.21794 0.96670 0.93268 0.98461 0.91378 1.22110 0.99542 0.98012 0.95758 1.22356 1.01515 0.94077 0.97681 1.22430 0.99321 0.96846 0.95441 1.21909 0.99632 0.93515 0.95195 0.91143 1.22169 0.94404 0.86538 0.95966 1.86414 1.72856 1.43429 1.36807 0.93885 0.79296 0.96756 0.96774 0.92049 0.93607 0.90276 0.91906 0.90721 0.90811 0.94086 0.92320 0.75515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.33 13.06 21.65 0.28 -60.05 16 2 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 7 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -39.37 5.34 -343.45 -1.83 -41.20 16 10 C 0.16 6.79 5.29 86.38 0.46 7.24 16 11 C -0.08 -2.79 2.55 -10.07 -0.03 -2.82 16 12 H 0.07 2.33 7.84 -2.39 -0.02 2.31 16 13 C -0.12 -3.79 6.13 31.32 0.19 -3.60 16 14 C -0.12 -3.02 6.83 31.67 0.22 -2.80 16 15 C -0.10 -2.44 6.25 31.88 0.20 -2.24 16 16 C -0.08 -2.31 2.66 -9.72 -0.03 -2.34 16 17 H 0.07 2.11 7.85 -2.39 -0.02 2.10 16 18 C 0.09 2.09 6.32 71.98 0.46 2.54 16 19 O -0.59 -12.96 13.57 -148.98 -2.02 -14.99 16 20 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 21 H 0.37 20.89 7.50 -92.71 -0.70 20.19 16 22 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 25 H 0.05 1.76 7.58 -2.38 -0.02 1.74 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.61 7.97 -2.39 -0.02 1.59 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.06 1.24 8.02 -2.39 -0.02 1.22 16 32 H 0.40 4.87 9.12 -74.06 -0.68 4.19 16 Total: -1.00 -66.71 263.37 0.95 -65.76 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -0.27 Total: 23.16 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 2.77 Total: -21.65 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -1.55 Total: -101.25 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -2.02 Total: -14.99 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -66.71 0.95 -65.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084315874.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.288 kcal (2) G-P(sol) polarization free energy of solvation -66.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds