Wall clock time and date at job start Mon Mar 30 2020 01:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86798 * 119.99829 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99743 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99924 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99917 * 3 2 1 7 7 C 1.38633 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00106 * 0.02562 * 7 2 1 9 9 O 1.34932 * 120.00045 * 179.97438 * 7 2 1 10 10 C 1.42896 * 116.99720 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46929 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.01816 * 53.60839 * 11 10 9 13 13 C 1.54264 * 110.03172 * 292.16723 * 11 10 9 14 14 C 1.54888 * 104.19587 * 217.10310 * 13 11 10 15 15 C 1.54892 * 102.74623 * 37.94011 * 14 13 11 16 16 C 1.53875 * 110.03560 * 174.99531 * 11 10 9 17 17 H 1.09002 * 110.02748 * 359.95691 * 16 11 10 18 18 C 1.52999 * 110.03705 * 238.56893 * 16 11 10 19 19 N 1.46901 * 109.47066 * 174.99808 * 18 16 11 20 20 H 0.97006 * 119.99803 * 0.02562 * 1 2 3 21 21 H 1.09009 * 109.47154 * 300.00064 * 10 9 7 22 22 H 1.08995 * 109.47761 * 60.00268 * 10 9 7 23 23 H 1.08995 * 110.48946 * 335.78301 * 13 11 10 24 24 H 1.09002 * 110.48468 * 98.42587 * 13 11 10 25 25 H 1.09003 * 110.75585 * 279.62872 * 14 13 11 26 26 H 1.09004 * 110.75597 * 156.25619 * 14 13 11 27 27 H 1.09006 * 110.48394 * 203.37344 * 15 14 13 28 28 H 1.08999 * 110.48229 * 80.74138 * 15 14 13 29 29 H 1.08996 * 109.47000 * 295.00236 * 18 16 11 30 30 H 1.09000 * 109.46654 * 54.99911 * 18 16 11 31 31 H 1.00898 * 110.99480 * 180.02562 * 19 18 16 32 32 H 1.00900 * 111.00131 * 303.96136 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0465 -1.4001 5 1 3.5473 1.4403 0.7001 6 1 1.4472 2.6527 0.7000 7 6 2.0090 -1.2006 0.0005 8 1 1.4690 -2.1359 0.0005 9 8 3.3583 -1.2006 0.0000 10 6 4.0070 -2.4738 0.0000 11 6 5.5238 -2.2734 0.0001 12 1 5.8141 -1.6221 0.8245 13 6 5.9760 -1.6620 -1.3421 14 6 7.3330 -2.3492 -1.6345 15 6 7.0947 -3.7989 -1.1438 16 6 6.2351 -3.6320 0.1262 17 1 5.4996 -4.4341 0.1882 18 6 7.1280 -3.6429 1.3686 19 7 7.7069 -4.9816 1.5438 20 1 -0.4850 0.8401 -0.0004 21 1 3.7144 -3.0307 0.8903 22 1 3.7139 -3.0311 -0.8896 23 1 5.2556 -1.8907 -2.1275 24 1 6.1072 -0.5843 -1.2455 25 1 8.1353 -1.8766 -1.0678 26 1 7.5517 -2.3338 -2.7022 27 1 8.0423 -4.2806 -0.9026 28 1 6.5550 -4.3727 -1.8972 29 1 7.9289 -2.9137 1.2467 30 1 6.5335 -3.3865 2.2455 31 1 8.3009 -5.0148 2.3587 32 1 6.9845 -5.6842 1.5943 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084322355.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:37 Heat of formation + Delta-G solvation = -58.443709 kcal Electronic energy + Delta-G solvation = -13031.373868 eV Core-core repulsion = 10798.345590 eV Total energy + Delta-G solvation = -2233.028278 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.81357 -36.14939 -33.93481 -31.86588 -29.78741 -28.45804 -25.24793 -23.82573 -22.25426 -19.99991 -19.27372 -17.46199 -15.99083 -15.69051 -15.00371 -14.64679 -14.42373 -13.82530 -13.53921 -13.25221 -12.58082 -12.21075 -11.95268 -11.56399 -10.93662 -10.74957 -10.63651 -10.60003 -10.45860 -10.29602 -10.19620 -9.81670 -9.44086 -9.21899 -8.74217 -8.12362 -5.96335 -3.63072 3.43934 3.46757 3.63698 4.43887 4.59751 4.80026 4.91209 5.00979 5.35905 5.38889 5.44578 5.54933 5.68825 5.77760 5.90011 5.97205 6.04323 6.13634 6.21346 6.26890 6.37847 6.49908 6.58765 6.62688 6.71710 6.87234 7.04842 7.34578 7.96019 8.40220 9.44178 10.01505 11.16752 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049615 B = 0.008445 C = 0.007956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.210112 B = 3314.754708 C = 3518.342937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.042 3.958 3 Si 0.907 3.093 4 H -0.282 1.282 5 H -0.265 1.265 6 H -0.292 1.292 7 C -0.355 4.355 8 H 0.077 0.923 9 O -0.333 6.333 10 C 0.093 3.907 11 C -0.086 4.086 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.127 4.127 15 C -0.111 4.111 16 C -0.084 4.084 17 H 0.069 0.931 18 C 0.068 3.932 19 N -0.851 5.851 20 H 0.268 0.732 21 H 0.024 0.976 22 H 0.029 0.971 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.028 0.972 31 H 0.337 0.663 32 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.045 -6.734 0.605 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.155 4.155 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.190 1.190 6 H -0.218 1.218 7 C -0.433 4.433 8 H 0.094 0.906 9 O -0.249 6.249 10 C 0.015 3.985 11 C -0.105 4.105 12 H 0.092 0.908 13 C -0.149 4.149 14 C -0.165 4.165 15 C -0.149 4.149 16 C -0.102 4.102 17 H 0.088 0.912 18 C -0.063 4.063 19 N -0.380 5.380 20 H 0.078 0.922 21 H 0.043 0.957 22 H 0.047 0.953 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.046 0.954 31 H 0.149 0.851 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.383 -6.324 -0.094 16.632 hybrid contribution -0.499 0.543 0.963 1.213 sum 14.884 -5.780 0.869 15.990 Atomic orbital electron populations 1.69694 1.05353 1.27111 1.53990 1.24317 0.94855 0.98219 0.98092 0.86148 0.79960 0.82258 0.78145 1.20770 1.18950 1.21831 1.20384 0.78703 0.94988 1.49220 0.90572 1.85209 1.20248 1.25429 1.93974 1.22144 0.90365 0.87677 0.98308 1.21768 0.94675 0.95456 0.98639 0.90763 1.22334 0.95920 0.99700 0.96980 1.22550 0.97710 0.96031 1.00190 1.22318 0.99931 0.96579 0.96042 1.21712 0.96399 0.97350 0.94789 0.91235 1.21897 0.97291 0.90570 0.96525 1.58749 1.26094 1.05915 1.47224 0.92200 0.95744 0.95272 0.91286 0.91770 0.92057 0.92100 0.90704 0.92195 0.91027 0.95401 0.85086 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.95 13.96 55.48 0.77 -28.18 16 2 C 0.04 1.27 5.49 -17.51 -0.10 1.18 16 3 Si 0.91 23.71 28.61 -169.99 -4.86 18.85 16 4 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.26 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.35 -10.74 10.35 30.88 0.32 -10.42 16 8 H 0.08 2.40 8.00 -52.48 -0.42 1.98 16 9 O -0.33 -8.96 8.46 -16.52 -0.14 -9.10 16 10 C 0.09 1.98 5.06 37.16 0.19 2.17 16 11 C -0.09 -1.48 2.84 -89.50 -0.25 -1.73 16 12 H 0.07 1.31 7.67 -51.93 -0.40 0.91 16 13 C -0.11 -1.83 6.22 -25.07 -0.16 -1.99 16 14 C -0.13 -1.67 6.91 -24.74 -0.17 -1.84 16 15 C -0.11 -1.42 6.29 -25.07 -0.16 -1.58 16 16 C -0.08 -1.15 2.74 -89.50 -0.25 -1.40 16 17 H 0.07 0.98 7.67 -51.93 -0.40 0.58 16 18 C 0.07 0.82 5.85 -3.82 -0.02 0.80 16 19 N -0.85 -8.62 9.12 -10.37 -0.09 -8.72 16 20 H 0.27 7.92 8.31 -40.82 -0.34 7.58 16 21 H 0.02 0.52 8.14 -51.92 -0.42 0.09 16 22 H 0.03 0.62 8.00 -51.93 -0.42 0.21 16 23 H 0.07 1.21 7.76 -51.93 -0.40 0.80 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.92 7.48 -51.93 -0.39 0.53 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.34 2.80 9.08 -39.29 -0.36 2.44 16 32 H 0.34 3.17 8.99 -39.29 -0.35 2.82 16 LS Contribution 263.21 15.07 3.97 3.97 Total: -1.00 -32.17 263.21 -6.18 -38.35 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.23 Total: -0.35 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -0.60 Total: -14.81 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.68 Total: -36.90 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.14 Total: -9.10 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.86 Total: 18.85 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.17 -6.18 -38.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084322355.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.095 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds