Wall clock time and date at job start Mon Mar 30 2020 01:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86798 * 119.99829 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99743 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99924 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99917 * 3 2 1 7 7 C 1.38633 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00106 * 0.02562 * 7 2 1 9 9 O 1.34932 * 120.00045 * 179.97438 * 7 2 1 10 10 C 1.42896 * 116.99720 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46929 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.01816 * 53.60839 * 11 10 9 13 13 C 1.54264 * 110.03172 * 292.16723 * 11 10 9 14 14 C 1.54888 * 104.19587 * 217.10310 * 13 11 10 15 15 C 1.54892 * 102.74623 * 37.94011 * 14 13 11 16 16 C 1.53875 * 110.03560 * 174.99531 * 11 10 9 17 17 H 1.09002 * 110.02748 * 359.95691 * 16 11 10 18 18 C 1.52999 * 110.03705 * 238.56893 * 16 11 10 19 19 N 1.46901 * 109.47066 * 174.99808 * 18 16 11 20 20 H 0.97006 * 119.99803 * 0.02562 * 1 2 3 21 21 H 1.09009 * 109.47154 * 300.00064 * 10 9 7 22 22 H 1.08995 * 109.47761 * 60.00268 * 10 9 7 23 23 H 1.08995 * 110.48946 * 335.78301 * 13 11 10 24 24 H 1.09002 * 110.48468 * 98.42587 * 13 11 10 25 25 H 1.09003 * 110.75585 * 279.62872 * 14 13 11 26 26 H 1.09004 * 110.75597 * 156.25619 * 14 13 11 27 27 H 1.09006 * 110.48394 * 203.37344 * 15 14 13 28 28 H 1.08999 * 110.48229 * 80.74138 * 15 14 13 29 29 H 1.08996 * 109.47000 * 295.00236 * 18 16 11 30 30 H 1.09000 * 109.46654 * 54.99911 * 18 16 11 31 31 H 1.00898 * 110.99480 * 180.02562 * 19 18 16 32 32 H 1.00900 * 111.00131 * 303.96136 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0465 -1.4001 5 1 3.5473 1.4403 0.7001 6 1 1.4472 2.6527 0.7000 7 6 2.0090 -1.2006 0.0005 8 1 1.4690 -2.1359 0.0005 9 8 3.3583 -1.2006 0.0000 10 6 4.0070 -2.4738 0.0000 11 6 5.5238 -2.2734 0.0001 12 1 5.8141 -1.6221 0.8245 13 6 5.9760 -1.6620 -1.3421 14 6 7.3330 -2.3492 -1.6345 15 6 7.0947 -3.7989 -1.1438 16 6 6.2351 -3.6320 0.1262 17 1 5.4996 -4.4341 0.1882 18 6 7.1280 -3.6429 1.3686 19 7 7.7069 -4.9816 1.5438 20 1 -0.4850 0.8401 -0.0004 21 1 3.7144 -3.0307 0.8903 22 1 3.7139 -3.0311 -0.8896 23 1 5.2556 -1.8907 -2.1275 24 1 6.1072 -0.5843 -1.2455 25 1 8.1353 -1.8766 -1.0678 26 1 7.5517 -2.3338 -2.7022 27 1 8.0423 -4.2806 -0.9026 28 1 6.5550 -4.3727 -1.8972 29 1 7.9289 -2.9137 1.2467 30 1 6.5335 -3.3865 2.2455 31 1 8.3009 -5.0148 2.3587 32 1 6.9845 -5.6842 1.5943 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084322355.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:36 Heat of formation + Delta-G solvation = -81.298947 kcal Electronic energy + Delta-G solvation = -13032.364945 eV Core-core repulsion = 10798.345590 eV Total energy + Delta-G solvation = -2234.019356 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.11215 -38.08539 -34.93927 -34.13135 -31.25250 -29.56257 -27.02517 -25.50205 -23.62820 -21.24008 -20.59206 -19.59967 -17.70308 -16.85941 -16.52628 -16.08150 -15.73566 -15.34458 -15.14100 -14.56475 -14.28349 -14.00678 -13.49645 -13.04786 -12.83375 -12.26247 -11.94648 -11.91832 -11.78845 -11.68011 -11.60896 -11.38893 -11.30542 -11.22007 -10.38827 -9.58086 -8.30533 -6.01107 1.35582 1.39528 1.58164 2.41593 3.01881 3.19626 3.61883 3.73357 3.91661 4.01509 4.32437 4.36824 4.50581 4.55355 4.63169 4.66514 4.75587 4.87681 4.91045 4.96593 5.16457 5.19443 5.30888 5.42113 5.50208 5.53785 5.57518 6.11218 6.22493 6.63043 7.08433 7.78707 8.85561 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049615 B = 0.008445 C = 0.007956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.210112 B = 3314.754708 C = 3518.342937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.014 4.014 3 Si 0.977 3.023 4 H -0.271 1.271 5 H -0.263 1.263 6 H -0.278 1.278 7 C -0.362 4.362 8 H 0.045 0.955 9 O -0.345 6.345 10 C 0.086 3.914 11 C -0.081 4.081 12 H 0.070 0.930 13 C -0.117 4.117 14 C -0.116 4.116 15 C -0.104 4.104 16 C -0.078 4.078 17 H 0.065 0.935 18 C 0.074 3.926 19 N -0.849 5.849 20 H 0.275 0.725 21 H 0.023 0.977 22 H 0.026 0.974 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.020 0.980 31 H 0.350 0.650 32 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.324 -6.420 0.580 18.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.208 4.208 3 Si 0.801 3.199 4 H -0.197 1.197 5 H -0.187 1.187 6 H -0.203 1.203 7 C -0.441 4.441 8 H 0.063 0.937 9 O -0.261 6.261 10 C 0.009 3.991 11 C -0.100 4.100 12 H 0.088 0.912 13 C -0.155 4.155 14 C -0.154 4.154 15 C -0.142 4.142 16 C -0.097 4.097 17 H 0.083 0.917 18 C -0.057 4.057 19 N -0.379 5.379 20 H 0.084 0.916 21 H 0.041 0.959 22 H 0.044 0.956 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.038 0.962 31 H 0.164 0.836 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 17.674 -6.037 -0.113 18.677 hybrid contribution -1.243 0.329 0.976 1.615 sum 16.431 -5.708 0.863 17.416 Atomic orbital electron populations 1.69803 1.06960 1.28528 1.54764 1.25238 0.95831 1.02072 0.97612 0.85098 0.78547 0.77566 0.78722 1.19663 1.18687 1.20313 1.20372 0.80209 0.94130 1.49365 0.93703 1.85156 1.18371 1.28501 1.94076 1.22478 0.92920 0.85737 0.97972 1.21776 0.91461 0.97682 0.99131 0.91152 1.22350 0.97669 0.99563 0.95896 1.22505 0.95833 0.95585 1.01450 1.22284 1.00140 0.96520 0.95234 1.21658 0.96577 0.94929 0.96573 0.91700 1.21759 0.96982 0.91812 0.95158 1.58703 1.26207 1.04921 1.48101 0.91612 0.95914 0.95582 0.92975 0.92565 0.90700 0.90622 0.89433 0.92195 0.90500 0.96198 0.83643 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.03 13.96 21.61 0.30 -60.72 16 2 C -0.01 -0.89 5.49 84.82 0.47 -0.42 16 3 Si 0.98 48.69 28.61 68.60 1.96 50.65 16 4 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.26 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 7 C -0.36 -22.45 10.35 67.91 0.70 -21.74 16 8 H 0.05 2.97 8.00 -2.91 -0.02 2.95 16 9 O -0.34 -18.77 8.46 -82.01 -0.69 -19.46 16 10 C 0.09 3.71 5.06 71.98 0.36 4.07 16 11 C -0.08 -2.72 2.84 -10.07 -0.03 -2.75 16 12 H 0.07 2.41 7.67 -2.38 -0.02 2.39 16 13 C -0.12 -3.70 6.22 31.67 0.20 -3.50 16 14 C -0.12 -2.72 6.91 31.89 0.22 -2.50 16 15 C -0.10 -2.39 6.29 31.67 0.20 -2.19 16 16 C -0.08 -2.03 2.74 -10.07 -0.03 -2.06 16 17 H 0.06 1.75 7.67 -2.39 -0.02 1.73 16 18 C 0.07 1.62 5.85 86.30 0.50 2.12 16 19 N -0.85 -14.98 9.12 -186.72 -1.70 -16.68 16 20 H 0.27 16.27 8.31 -92.70 -0.77 15.50 16 21 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 22 H 0.03 1.13 8.00 -2.39 -0.02 1.12 16 23 H 0.05 1.80 7.76 -2.39 -0.02 1.78 16 24 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.09 1.84 7.48 -2.38 -0.02 1.82 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.35 4.85 9.08 -89.70 -0.81 4.03 16 32 H 0.34 5.65 8.99 -89.69 -0.81 4.84 16 Total: -1.00 -68.48 263.21 1.94 -66.54 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -0.52 Total: 8.65 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 2.60 Total: -28.97 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -1.40 Total: -77.40 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.69 Total: -19.46 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.96 Total: 50.65 kcal Total: -68.48 1.94 -66.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084322355.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.762 kcal (2) G-P(sol) polarization free energy of solvation -68.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds