Wall clock time and date at job start Mon Mar 30 2020 01:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86801 * 119.99578 * 2 1 4 4 H 1.48500 * 109.47085 * 240.00233 * 3 2 1 5 5 H 1.48493 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47025 * 120.00312 * 3 2 1 7 7 C 1.38635 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00545 * 179.97438 * 7 2 1 9 9 O 1.34932 * 119.99432 * 359.97438 * 7 2 1 10 10 C 1.42902 * 116.99262 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46574 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.82117 * 303.11647 * 11 10 9 13 13 C 1.54894 * 110.75410 * 66.45996 * 11 10 9 14 14 C 1.54266 * 104.31305 * 156.31914 * 13 11 10 15 15 C 1.53869 * 106.60031 * 336.32486 * 14 13 11 16 16 C 1.54266 * 106.59800 * 359.97438 * 15 14 13 17 17 H 1.09007 * 110.48724 * 264.79935 * 16 15 14 18 18 C 1.53003 * 110.48569 * 142.29400 * 16 15 14 19 19 N 1.46901 * 109.47396 * 66.45258 * 18 16 15 20 20 H 0.96996 * 120.00361 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47393 * 60.00587 * 10 9 7 22 22 H 1.08995 * 109.47870 * 299.99846 * 10 9 7 23 23 H 1.09002 * 110.48891 * 37.57340 * 13 11 10 24 24 H 1.08998 * 110.48494 * 275.06427 * 13 11 10 25 25 H 1.09001 * 110.03084 * 95.60669 * 14 13 11 26 26 H 1.08995 * 110.03255 * 217.03136 * 14 13 11 27 27 H 1.08999 * 110.04012 * 119.28327 * 15 14 13 28 28 H 1.09006 * 110.02998 * 240.67078 * 15 14 13 29 29 H 1.09002 * 109.47236 * 186.45449 * 18 16 15 30 30 H 1.08994 * 109.46816 * 306.45068 * 18 16 15 31 31 H 1.00902 * 110.99533 * 56.04462 * 19 18 16 32 32 H 1.00902 * 110.99930 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1034 1.6966 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0091 -1.2006 -0.0005 8 1 3.0891 -1.2006 -0.0010 9 8 1.3344 -2.3691 -0.0005 10 6 2.1128 -3.5675 -0.0017 11 6 1.1808 -4.7809 -0.0009 12 1 0.5044 -4.7493 0.8532 13 6 0.3862 -4.8635 -1.3278 14 6 0.0012 -6.3524 -1.4497 15 6 1.0231 -7.1407 -0.6121 16 6 1.9940 -6.1035 -0.0109 17 1 2.8811 -6.0039 -0.6364 18 6 2.3867 -6.5003 1.4136 19 7 3.1792 -7.7367 1.3767 20 1 -0.4850 0.8400 0.0004 21 1 2.7423 -3.5928 0.8879 22 1 2.7410 -3.5920 -0.8921 23 1 1.0127 -4.5616 -2.1672 24 1 -0.5073 -4.2414 -1.2768 25 1 -1.0039 -6.5113 -1.0589 26 1 0.0508 -6.6668 -2.4922 27 1 0.5142 -7.6823 0.1853 28 1 1.5684 -7.8383 -1.2480 29 1 2.9784 -5.7027 1.8629 30 1 1.4868 -6.6632 2.0065 31 1 3.9862 -7.6311 0.7803 32 1 3.4514 -8.0196 2.3062 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084322357.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:38 Heat of formation + Delta-G solvation = -59.609213 kcal Electronic energy + Delta-G solvation = -12958.397494 eV Core-core repulsion = 10725.318676 eV Total energy + Delta-G solvation = -2233.078818 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.53790 -35.85482 -33.94847 -31.73855 -29.57838 -28.38796 -24.91919 -23.72736 -22.47030 -19.58345 -19.50839 -17.39430 -15.79120 -15.50646 -14.79334 -14.41748 -14.12904 -13.82417 -13.75012 -13.46410 -12.64981 -11.96204 -11.58801 -11.39642 -10.92438 -10.77575 -10.62028 -10.48703 -10.35057 -10.18244 -10.03947 -9.92909 -9.38554 -9.06118 -8.64082 -7.91769 -5.91359 -3.54629 3.33032 3.34707 3.38076 4.32265 4.56142 4.95630 4.97593 5.14907 5.40033 5.50721 5.61982 5.75591 5.77940 5.91229 6.03227 6.08904 6.16474 6.22678 6.32488 6.45510 6.52201 6.66624 6.71927 6.75677 6.91743 7.03302 7.13153 7.42270 7.50151 8.46848 9.52084 10.22935 11.29889 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.050870 B = 0.007817 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.291461 B = 3580.924377 C = 3966.145749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.023 3.977 3 Si 0.924 3.076 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.360 4.360 8 H 0.059 0.941 9 O -0.293 6.293 10 C 0.082 3.918 11 C -0.079 4.079 12 H 0.078 0.922 13 C -0.109 4.109 14 C -0.129 4.129 15 C -0.102 4.102 16 C -0.084 4.084 17 H 0.069 0.931 18 C 0.066 3.934 19 N -0.851 5.851 20 H 0.258 0.742 21 H 0.017 0.983 22 H 0.020 0.980 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.337 0.663 32 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.175 -12.315 0.297 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.175 4.175 3 Si 0.751 3.249 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.440 4.440 8 H 0.077 0.923 9 O -0.208 6.208 10 C 0.005 3.995 11 C -0.098 4.098 12 H 0.096 0.904 13 C -0.146 4.146 14 C -0.167 4.167 15 C -0.140 4.140 16 C -0.103 4.103 17 H 0.088 0.912 18 C -0.064 4.064 19 N -0.379 5.379 20 H 0.068 0.932 21 H 0.035 0.965 22 H 0.038 0.962 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.149 0.851 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.168 -12.540 -0.018 12.934 hybrid contribution 1.559 1.458 0.443 2.180 sum 4.727 -11.082 0.426 12.055 Atomic orbital electron populations 1.70007 1.05361 1.25918 1.51964 1.24931 0.95639 0.97649 0.99313 0.86072 0.78559 0.81945 0.78346 1.20425 1.20854 1.20465 1.20762 0.90078 0.82947 1.50171 0.92286 1.85634 1.31657 1.10293 1.93233 1.22083 0.92896 0.87210 0.97357 1.22095 0.96845 0.92147 0.98736 0.90389 1.22248 1.00618 0.94695 0.97089 1.22222 0.98869 0.96214 0.99373 1.21992 0.96279 0.96958 0.98743 1.22033 0.98303 0.94752 0.95163 0.91229 1.21892 0.97637 0.89796 0.97119 1.58772 1.27803 1.35078 1.16279 0.93226 0.96480 0.96209 0.91998 0.90967 0.92307 0.92543 0.91923 0.92389 0.95279 0.90987 0.85091 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.33 13.67 55.48 0.76 -27.57 16 2 C 0.02 0.68 5.49 -17.51 -0.10 0.59 16 3 Si 0.92 22.43 29.55 -169.99 -5.02 17.40 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.36 -10.86 9.89 30.88 0.31 -10.55 16 8 H 0.06 1.67 7.77 -52.49 -0.41 1.27 16 9 O -0.29 -8.57 9.63 -16.52 -0.16 -8.73 16 10 C 0.08 1.86 5.46 37.16 0.20 2.06 16 11 C -0.08 -1.47 2.62 -88.42 -0.23 -1.71 16 12 H 0.08 1.52 8.06 -51.93 -0.42 1.10 16 13 C -0.11 -1.97 6.12 -25.07 -0.15 -2.12 16 14 C -0.13 -1.86 6.80 -25.62 -0.17 -2.04 16 15 C -0.10 -1.39 6.18 -25.62 -0.16 -1.55 16 16 C -0.08 -1.23 2.51 -88.76 -0.22 -1.46 16 17 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 18 C 0.07 0.88 6.10 -3.82 -0.02 0.86 16 19 N -0.85 -9.37 9.43 -10.37 -0.10 -9.47 16 20 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 21 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 22 H 0.02 0.44 8.10 -51.93 -0.42 0.02 16 23 H 0.06 1.14 8.01 -51.93 -0.42 0.73 16 24 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.84 7.77 -51.93 -0.40 0.44 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.03 0.41 7.90 -51.93 -0.41 0.00 16 30 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 31 H 0.34 3.38 8.99 -39.29 -0.35 3.02 16 32 H 0.34 3.09 9.08 -39.29 -0.36 2.73 16 LS Contribution 265.36 15.07 4.00 4.00 Total: -1.00 -32.80 265.36 -6.33 -39.13 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.26 Total: 1.15 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.55 Total: -15.92 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.66 Total: -37.04 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.16 Total: -8.73 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.80 -6.33 -39.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084322357.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.475 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds