Wall clock time and date at job start Mon Mar 30 2020 01:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86801 * 119.99578 * 2 1 4 4 H 1.48500 * 109.47085 * 240.00233 * 3 2 1 5 5 H 1.48493 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47025 * 120.00312 * 3 2 1 7 7 C 1.38635 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00545 * 179.97438 * 7 2 1 9 9 O 1.34932 * 119.99432 * 359.97438 * 7 2 1 10 10 C 1.42902 * 116.99262 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46574 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.82117 * 303.11647 * 11 10 9 13 13 C 1.54894 * 110.75410 * 66.45996 * 11 10 9 14 14 C 1.54266 * 104.31305 * 156.31914 * 13 11 10 15 15 C 1.53869 * 106.60031 * 336.32486 * 14 13 11 16 16 C 1.54266 * 106.59800 * 359.97438 * 15 14 13 17 17 H 1.09007 * 110.48724 * 264.79935 * 16 15 14 18 18 C 1.53003 * 110.48569 * 142.29400 * 16 15 14 19 19 N 1.46901 * 109.47396 * 66.45258 * 18 16 15 20 20 H 0.96996 * 120.00361 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47393 * 60.00587 * 10 9 7 22 22 H 1.08995 * 109.47870 * 299.99846 * 10 9 7 23 23 H 1.09002 * 110.48891 * 37.57340 * 13 11 10 24 24 H 1.08998 * 110.48494 * 275.06427 * 13 11 10 25 25 H 1.09001 * 110.03084 * 95.60669 * 14 13 11 26 26 H 1.08995 * 110.03255 * 217.03136 * 14 13 11 27 27 H 1.08999 * 110.04012 * 119.28327 * 15 14 13 28 28 H 1.09006 * 110.02998 * 240.67078 * 15 14 13 29 29 H 1.09002 * 109.47236 * 186.45449 * 18 16 15 30 30 H 1.08994 * 109.46816 * 306.45068 * 18 16 15 31 31 H 1.00902 * 110.99533 * 56.04462 * 19 18 16 32 32 H 1.00902 * 110.99930 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1034 1.6966 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0091 -1.2006 -0.0005 8 1 3.0891 -1.2006 -0.0010 9 8 1.3344 -2.3691 -0.0005 10 6 2.1128 -3.5675 -0.0017 11 6 1.1808 -4.7809 -0.0009 12 1 0.5044 -4.7493 0.8532 13 6 0.3862 -4.8635 -1.3278 14 6 0.0012 -6.3524 -1.4497 15 6 1.0231 -7.1407 -0.6121 16 6 1.9940 -6.1035 -0.0109 17 1 2.8811 -6.0039 -0.6364 18 6 2.3867 -6.5003 1.4136 19 7 3.1792 -7.7367 1.3767 20 1 -0.4850 0.8400 0.0004 21 1 2.7423 -3.5928 0.8879 22 1 2.7410 -3.5920 -0.8921 23 1 1.0127 -4.5616 -2.1672 24 1 -0.5073 -4.2414 -1.2768 25 1 -1.0039 -6.5113 -1.0589 26 1 0.0508 -6.6668 -2.4922 27 1 0.5142 -7.6823 0.1853 28 1 1.5684 -7.8383 -1.2480 29 1 2.9784 -5.7027 1.8629 30 1 1.4868 -6.6632 2.0065 31 1 3.9862 -7.6311 0.7803 32 1 3.4514 -8.0196 2.3062 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084322357.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:38 Heat of formation + Delta-G solvation = -83.355078 kcal Electronic energy + Delta-G solvation = -12959.427192 eV Core-core repulsion = 10725.318676 eV Total energy + Delta-G solvation = -2234.108516 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.93614 -37.86023 -35.03794 -33.94135 -31.13733 -29.60179 -26.93637 -25.39258 -23.81717 -21.04971 -20.77922 -19.54927 -17.48094 -16.83197 -16.40157 -15.86735 -15.76700 -15.29064 -15.20943 -14.66873 -14.45953 -13.63690 -13.47178 -12.97804 -12.68143 -12.24029 -12.01205 -11.94961 -11.81317 -11.67595 -11.65383 -11.30483 -11.20422 -11.09469 -10.15962 -9.57518 -8.19226 -5.89368 1.37434 1.45600 1.52793 2.31702 3.13097 3.40485 3.60142 3.70142 4.01554 4.19746 4.28255 4.37677 4.50802 4.55048 4.63154 4.73146 4.79948 4.84911 4.94815 5.00105 5.10807 5.18822 5.21918 5.33096 5.37617 5.53620 5.58091 6.19228 6.21437 6.63601 7.23245 8.05450 9.05611 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.050870 B = 0.007817 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.291461 B = 3580.924377 C = 3966.145749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.041 4.041 3 Si 1.006 2.994 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.384 4.384 8 H 0.070 0.930 9 O -0.333 6.333 10 C 0.079 3.921 11 C -0.079 4.079 12 H 0.064 0.936 13 C -0.112 4.112 14 C -0.120 4.120 15 C -0.094 4.094 16 C -0.073 4.073 17 H 0.073 0.927 18 C 0.071 3.929 19 N -0.846 5.846 20 H 0.261 0.739 21 H 0.021 0.979 22 H 0.023 0.977 23 H 0.053 0.947 24 H 0.040 0.960 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.018 0.982 30 H 0.070 0.930 31 H 0.345 0.655 32 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.491 -13.133 0.204 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.235 4.235 3 Si 0.827 3.173 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.462 4.462 8 H 0.087 0.913 9 O -0.249 6.249 10 C 0.002 3.998 11 C -0.098 4.098 12 H 0.082 0.918 13 C -0.150 4.150 14 C -0.158 4.158 15 C -0.131 4.131 16 C -0.092 4.092 17 H 0.092 0.908 18 C -0.060 4.060 19 N -0.376 5.376 20 H 0.070 0.930 21 H 0.039 0.961 22 H 0.041 0.959 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.036 0.964 30 H 0.088 0.912 31 H 0.158 0.842 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.509 -13.396 -0.104 14.135 hybrid contribution 1.158 1.647 0.474 2.068 sum 5.667 -11.750 0.370 13.050 Atomic orbital electron populations 1.70189 1.07601 1.27337 1.53212 1.26245 0.96770 1.02039 0.98402 0.84831 0.77278 0.75870 0.79297 1.18835 1.20199 1.18849 1.21314 0.90799 0.83838 1.50300 0.91283 1.85580 1.34028 1.11818 1.93481 1.22351 0.93636 0.86423 0.97417 1.22093 0.96728 0.92559 0.98467 0.91795 1.22223 0.99051 0.97165 0.96513 1.22171 0.99516 0.93166 1.00917 1.21951 0.95711 0.96518 0.98934 1.21947 0.98164 0.92610 0.96476 0.90820 1.21740 0.97871 0.90505 0.95841 1.58708 1.28163 1.33320 1.17437 0.93008 0.96117 0.95936 0.92834 0.94126 0.91642 0.90694 0.91255 0.90556 0.96426 0.91152 0.84208 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.22 13.67 21.61 0.30 -60.92 16 2 C -0.04 -2.51 5.49 84.83 0.47 -2.04 16 3 Si 1.01 45.95 29.55 68.60 2.03 47.98 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.38 -23.53 9.89 67.91 0.67 -22.86 16 8 H 0.07 3.94 7.77 -2.91 -0.02 3.92 16 9 O -0.33 -20.17 9.63 -82.02 -0.79 -20.96 16 10 C 0.08 3.64 5.46 71.98 0.39 4.03 16 11 C -0.08 -2.99 2.62 -9.37 -0.02 -3.02 16 12 H 0.06 2.57 8.06 -2.39 -0.02 2.55 16 13 C -0.11 -4.11 6.12 31.67 0.19 -3.91 16 14 C -0.12 -3.27 6.80 31.32 0.21 -3.06 16 15 C -0.09 -2.31 6.18 31.32 0.19 -2.11 16 16 C -0.07 -2.05 2.51 -9.59 -0.02 -2.07 16 17 H 0.07 2.03 8.06 -2.38 -0.02 2.01 16 18 C 0.07 1.79 6.10 86.30 0.53 2.32 16 19 N -0.85 -16.44 9.43 -186.72 -1.76 -18.20 16 20 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 21 H 0.02 0.93 7.90 -2.38 -0.02 0.91 16 22 H 0.02 1.02 8.10 -2.39 -0.02 1.00 16 23 H 0.05 2.01 8.01 -2.39 -0.02 1.99 16 24 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.07 1.65 7.77 -2.39 -0.02 1.63 16 28 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.02 0.48 7.90 -2.39 -0.02 0.46 16 30 H 0.07 1.80 8.05 -2.39 -0.02 1.78 16 31 H 0.35 5.96 8.99 -89.69 -0.81 5.15 16 32 H 0.35 5.52 9.08 -89.69 -0.81 4.70 16 Total: -1.00 -71.57 265.36 1.86 -69.71 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -0.52 Total: 15.12 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 2.61 Total: -32.73 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -1.46 Total: -79.12 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.79 Total: -20.96 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -71.57 1.86 -69.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084322357.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.644 kcal (2) G-P(sol) polarization free energy of solvation -71.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds