Wall clock time and date at job start Mon Mar 30 2020 02:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 113.38570 * 2 1 4 4 C 1.53509 * 114.17533 * 133.08324 * 2 1 3 5 5 N 1.47475 * 87.93569 * 87.62031 * 4 2 1 6 6 C 1.46901 * 111.00331 * 138.70733 * 5 4 2 7 7 C 1.52996 * 109.47195 * 170.00343 * 6 5 4 8 8 C 1.52997 * 109.46947 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47288 * 59.99994 * 13 11 9 15 15 H 1.48503 * 109.47086 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46819 * 299.99648 * 13 11 9 17 17 C 1.47480 * 87.83358 * 27.01216 * 5 4 2 18 18 H 1.09001 * 109.46883 * 286.91584 * 1 2 3 19 19 H 1.09000 * 109.47455 * 46.91425 * 1 2 3 20 20 H 1.08994 * 109.47044 * 166.92125 * 1 2 3 21 21 H 0.96706 * 114.00191 * 313.08050 * 3 2 1 22 22 H 1.09004 * 113.47247 * 332.85611 * 4 2 1 23 23 H 1.08997 * 113.53436 * 202.40181 * 4 2 1 24 24 H 1.08992 * 109.46788 * 49.99974 * 6 5 4 25 25 H 1.08996 * 109.46661 * 290.00277 * 6 5 4 26 26 H 1.09001 * 109.47372 * 60.00105 * 7 6 5 27 27 H 1.09004 * 109.47108 * 299.99849 * 7 6 5 28 28 H 1.09001 * 109.46832 * 59.99979 * 8 7 6 29 29 H 1.09000 * 109.47611 * 300.00276 * 8 7 6 30 30 H 0.97004 * 119.99507 * 180.02562 * 12 11 9 31 31 H 1.09004 * 113.47382 * 87.75721 * 17 5 4 32 32 H 1.09007 * 113.47726 * 218.22041 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0971 1.3116 0.0000 4 6 2.1586 -0.9566 1.0228 5 7 2.0810 -2.0161 -0.0001 6 6 3.2986 -2.8381 -0.0002 7 6 3.0851 -4.0656 -0.8880 8 6 4.3534 -4.9213 -0.8886 9 6 4.1430 -6.1309 -1.7626 10 1 3.1992 -6.2746 -2.2675 11 6 5.1553 -7.0539 -1.9176 12 7 6.3045 -6.8791 -1.3023 13 14 4.8947 -8.5528 -3.0016 14 1 4.5933 -8.1147 -4.3880 15 1 6.1257 -9.3834 -3.0020 16 1 3.7581 -9.3516 -2.4767 17 6 2.1585 -0.9565 -1.0230 18 1 -0.3633 0.2990 0.9832 19 1 -0.3634 0.7020 -0.7505 20 1 -0.3633 -1.0010 -0.2325 21 1 1.6994 1.9121 -0.6453 22 1 1.5247 -1.1429 1.8898 23 1 3.1797 -0.6912 1.2966 24 1 3.5198 -3.1596 1.0175 25 1 4.1327 -2.2517 -0.3854 26 1 2.8638 -3.7440 -1.9057 27 1 2.2509 -4.6520 -0.5028 28 1 4.5751 -5.2430 0.1291 29 1 5.1874 -4.3348 -1.2739 30 1 7.0168 -7.5284 -1.4117 31 1 3.1797 -0.6904 -1.2960 32 1 1.5246 -1.1428 -1.8900 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084357657.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:15 Heat of formation + Delta-G solvation = -55.065897 kcal Electronic energy + Delta-G solvation = -12637.463588 eV Core-core repulsion = 10404.581782 eV Total energy + Delta-G solvation = -2232.881805 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.50732 -37.17379 -35.84614 -33.87758 -31.17150 -28.74954 -27.08101 -26.16845 -23.65152 -21.87198 -20.35792 -18.59640 -17.93847 -16.83133 -16.52946 -16.22487 -16.09282 -14.91671 -14.51269 -14.44271 -14.07957 -13.71190 -13.32687 -13.21014 -12.81274 -12.72265 -12.56407 -12.38971 -12.16665 -11.71921 -11.45325 -11.35216 -11.09529 -10.75051 -10.56700 -10.00645 -8.21556 -6.33315 1.39253 1.42944 1.50998 2.40157 2.86464 3.11310 3.17753 3.43305 3.84810 3.95689 4.10959 4.26810 4.44527 4.57299 4.62497 4.69088 4.79263 4.85546 4.92712 4.94420 5.09680 5.19513 5.29641 5.32718 5.49349 5.71511 5.82691 5.96831 6.24137 6.82816 6.85630 7.36094 8.90350 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.083541 B = 0.005734 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.086136 B = 4882.247523 C = 5010.275187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.109 3.891 3 O -0.565 6.565 4 C 0.003 3.997 5 N -0.473 5.473 6 C 0.033 3.967 7 C -0.082 4.082 8 C 0.025 3.975 9 C -0.546 4.546 10 H 0.059 0.941 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.968 3.032 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.266 1.266 17 C -0.031 4.031 18 H 0.073 0.927 19 H 0.083 0.917 20 H 0.071 0.929 21 H 0.396 0.604 22 H 0.101 0.899 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.037 0.963 26 H 0.045 0.955 27 H 0.052 0.948 28 H -0.008 1.008 29 H -0.010 1.010 30 H 0.264 0.736 31 H 0.065 0.935 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.956 14.167 1.469 17.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.068 3.932 3 O -0.373 6.373 4 C -0.126 4.126 5 N -0.196 5.196 6 C -0.095 4.095 7 C -0.120 4.120 8 C -0.013 4.013 9 C -0.584 4.584 10 H 0.077 0.923 11 C -0.199 4.199 12 N -0.574 5.574 13 Si 0.792 3.208 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.191 1.191 17 C -0.161 4.161 18 H 0.092 0.908 19 H 0.102 0.898 20 H 0.090 0.910 21 H 0.247 0.753 22 H 0.119 0.881 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.010 0.990 29 H 0.008 0.992 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.957 13.339 1.966 17.374 hybrid contribution 0.956 -0.260 -0.832 1.294 sum -10.000 13.079 1.134 16.503 Atomic orbital electron populations 1.21976 0.90703 1.03834 1.03699 1.22622 0.94284 0.81450 0.94879 1.86514 1.64359 1.22489 1.63983 1.24072 1.01251 0.90173 0.97114 1.68835 1.34164 1.11477 1.05160 1.22604 0.90977 0.95586 1.00372 1.21245 0.98088 0.94639 0.98040 1.18991 0.93125 0.94020 0.95170 1.21657 0.99835 1.07728 1.29176 0.92270 1.26015 0.94742 1.01699 0.97397 1.70099 1.05097 1.37613 1.44638 0.85461 0.77734 0.78454 0.79164 1.19120 1.20634 1.19094 1.24739 1.01304 0.92246 0.97775 0.90758 0.89809 0.91006 0.75274 0.88097 0.91526 0.91495 0.94447 0.93580 0.92939 0.98976 0.99202 0.92695 0.91660 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.46 71.98 0.68 -1.68 16 2 C 0.11 2.35 2.10 -10.45 -0.02 2.33 16 3 O -0.57 -11.47 13.55 -148.98 -2.02 -13.49 16 4 C 0.00 0.07 7.11 83.57 0.59 0.66 16 5 N -0.47 -14.57 6.14 -928.34 -5.70 -20.27 16 6 C 0.03 1.22 4.82 86.30 0.42 1.64 16 7 C -0.08 -3.63 5.48 30.59 0.17 -3.46 16 8 C 0.02 1.36 4.97 29.85 0.15 1.50 16 9 C -0.55 -32.25 9.11 25.60 0.23 -32.01 16 10 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 11 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 12 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 13 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 C -0.03 -0.83 7.08 83.57 0.59 -0.24 16 18 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 19 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 20 H 0.07 1.35 7.92 -2.39 -0.02 1.34 16 21 H 0.40 4.29 9.04 -74.05 -0.67 3.62 16 22 H 0.10 2.34 8.12 -2.39 -0.02 2.32 16 23 H 0.07 1.83 7.91 -2.39 -0.02 1.81 16 24 H 0.07 2.48 8.08 -2.39 -0.02 2.46 16 25 H 0.04 1.40 7.30 -2.39 -0.02 1.38 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.07 1.86 7.42 -2.38 -0.02 1.85 16 32 H 0.09 2.27 8.12 -2.38 -0.02 2.25 16 Total: -1.00 -67.82 268.23 -1.72 -69.54 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 0.41 Total: 5.81 kcal Atomic # 6 Polarization: -34.11 SS G_CDS: 3.27 Total: -30.84 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -5.41 Total: -78.13 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -2.02 Total: -13.49 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -67.82 -1.72 -69.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084357657.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.477 kcal (2) G-P(sol) polarization free energy of solvation -67.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds