Wall clock time and date at job start Mon Mar 30 2020 02:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47345 * 2 1 4 4 O 1.42906 * 113.38491 * 51.92179 * 3 2 1 5 5 C 1.53510 * 114.17166 * 184.99960 * 3 2 1 6 6 N 1.47472 * 87.93567 * 139.67088 * 5 3 2 7 7 C 1.46906 * 111.00187 * 221.29686 * 6 5 3 8 8 C 1.53000 * 109.47072 * 169.99961 * 7 6 5 9 9 C 1.50696 * 109.47198 * 180.02562 * 8 7 6 10 10 H 1.08008 * 119.99980 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00511 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99530 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00453 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47156 * 89.99325 * 13 11 9 15 15 H 1.48500 * 109.47207 * 209.99693 * 13 11 9 16 16 H 1.48502 * 109.46822 * 329.99438 * 13 11 9 17 17 C 1.47474 * 87.83857 * 332.99021 * 6 5 3 18 18 H 1.09007 * 109.47081 * 59.99816 * 1 2 3 19 19 H 1.08995 * 109.47744 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47444 * 300.00499 * 1 2 3 21 21 H 1.09006 * 109.46988 * 239.99389 * 2 1 3 22 22 H 1.09003 * 109.46783 * 120.00586 * 2 1 3 23 23 H 0.96699 * 113.99722 * 313.07914 * 4 3 2 24 24 H 1.08999 * 113.47644 * 24.90173 * 5 3 2 25 25 H 1.09005 * 113.47783 * 254.44028 * 5 3 2 26 26 H 1.08993 * 109.47164 * 289.99814 * 7 6 5 27 27 H 1.08996 * 109.46920 * 49.99848 * 7 6 5 28 28 H 1.09002 * 109.46936 * 299.99708 * 8 7 6 29 29 H 1.08996 * 109.47340 * 60.00144 * 8 7 6 30 30 H 0.97001 * 119.99851 * 180.02562 * 12 11 9 31 31 H 1.08998 * 113.48515 * 141.77227 * 17 6 5 32 32 H 1.09001 * 113.47583 * 272.24643 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.4664 2.2468 1.0325 5 6 3.5649 1.5699 -0.1221 6 7 3.3434 2.7124 -1.0279 7 6 4.2734 2.6712 -2.1644 8 6 3.8570 3.7155 -3.2021 9 6 4.8106 3.6729 -4.3682 10 1 5.6318 2.9714 -4.3689 11 6 4.6354 4.5301 -5.4339 12 7 3.6357 5.3846 -5.4328 13 14 5.8179 4.4777 -6.8790 14 1 5.3187 3.5138 -7.8924 15 1 5.9164 5.8289 -7.4872 16 1 7.1587 4.0488 -6.4061 17 6 2.0467 2.1068 -1.3839 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 1.8933 -0.5140 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 0.5058 2.1646 1.1072 24 1 4.0346 0.7149 -0.6083 25 1 4.0539 1.8451 0.8125 26 1 5.2830 2.8880 -1.8157 27 1 4.2503 1.6799 -2.6169 28 1 2.8473 3.4986 -3.5509 29 1 3.8801 4.7068 -2.7496 30 1 3.5122 5.9874 -6.1827 31 1 1.2488 2.8370 -1.5188 32 1 2.1112 1.3951 -2.2069 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084359194.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:59 Heat of formation + Delta-G solvation = -26.753306 kcal Electronic energy + Delta-G solvation = -12912.790315 eV Core-core repulsion = 10681.136236 eV Total energy + Delta-G solvation = -2231.654079 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.23343 -35.88464 -33.29539 -32.58303 -30.49385 -26.82353 -25.72831 -24.19485 -22.08379 -20.00500 -19.66606 -16.67255 -16.40460 -15.42794 -15.01878 -14.68099 -14.41193 -13.65419 -13.23208 -12.97164 -12.45223 -12.27583 -11.96948 -11.75719 -11.46867 -11.20965 -11.07173 -10.90577 -10.50561 -10.19308 -9.85025 -9.58121 -9.29503 -9.10008 -8.35826 -8.22187 -5.98705 -4.01720 3.32152 3.38314 3.41876 4.05688 4.41061 4.51380 4.65249 4.77307 5.06011 5.26332 5.36917 5.41140 5.63033 5.73360 5.78325 5.87548 5.90703 6.00929 6.08532 6.13387 6.27663 6.35067 6.84351 7.11223 7.49415 7.72943 7.77455 7.88946 8.08037 8.43122 9.05474 9.61941 11.12719 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.066095 B = 0.006722 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.530855 B = 4164.681268 C = 4201.803612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.140 4.140 3 C 0.098 3.902 4 O -0.529 6.529 5 C 0.007 3.993 6 N -0.461 5.461 7 C 0.026 3.974 8 C 0.030 3.970 9 C -0.523 4.523 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.016 4.016 18 H 0.060 0.940 19 H 0.058 0.942 20 H 0.055 0.945 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.372 0.628 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.027 0.973 28 H 0.015 0.985 29 H 0.024 0.976 30 H 0.261 0.739 31 H 0.083 0.917 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 -10.547 9.616 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.178 4.178 3 C 0.057 3.943 4 O -0.335 6.335 5 C -0.122 4.122 6 N -0.182 5.182 7 C -0.102 4.102 8 C -0.008 4.008 9 C -0.562 4.562 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.146 4.146 18 H 0.079 0.921 19 H 0.077 0.923 20 H 0.074 0.926 21 H 0.093 0.907 22 H 0.088 0.912 23 H 0.220 0.780 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.747 -9.517 9.816 14.472 hybrid contribution 0.121 -0.913 -1.441 1.710 sum -4.626 -10.430 8.375 14.154 Atomic orbital electron populations 1.21763 0.95478 1.02149 1.02045 1.22020 0.96617 0.96233 1.02963 1.22344 0.94724 0.88967 0.88303 1.86556 1.25322 1.67475 1.54135 1.23942 0.93924 0.94865 0.99489 1.69007 1.02972 1.33465 1.12801 1.22882 0.96021 0.99691 0.91601 1.19007 0.96491 0.93738 0.91542 1.21199 1.12476 1.19375 1.03115 0.92773 1.25010 0.95551 0.95343 0.98454 1.69981 1.30041 1.21803 1.31403 0.86580 0.81429 0.77287 0.82619 1.20704 1.21153 1.19865 1.24416 0.95899 0.98241 0.95995 0.92087 0.92276 0.92576 0.90667 0.91163 0.78046 0.90750 0.89715 0.91790 0.95461 0.96703 0.95742 0.92980 0.89850 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.49 37.16 0.35 -1.03 16 2 C -0.14 -1.49 5.66 -26.74 -0.15 -1.64 16 3 C 0.10 1.39 1.59 -90.09 -0.14 1.24 16 4 O -0.53 -7.63 13.54 -35.23 -0.48 -8.11 16 5 C 0.01 0.11 7.14 -7.56 -0.05 0.06 16 6 N -0.46 -9.19 6.41 -244.65 -1.57 -10.76 16 7 C 0.03 0.57 4.76 -3.82 -0.02 0.55 16 8 C 0.03 0.81 5.08 -27.88 -0.14 0.66 16 9 C -0.52 -15.20 9.11 -34.44 -0.31 -15.52 16 10 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 13 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 C -0.02 -0.28 6.41 -7.55 -0.05 -0.32 16 18 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 19 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 20 H 0.06 0.43 6.71 -51.93 -0.35 0.08 16 21 H 0.07 0.79 8.00 -51.93 -0.42 0.38 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.37 3.81 7.07 45.56 0.32 4.13 16 24 H 0.07 1.07 7.73 -51.93 -0.40 0.67 16 25 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 27 H 0.03 0.58 7.56 -51.93 -0.39 0.18 16 28 H 0.01 0.42 7.67 -51.93 -0.40 0.02 16 29 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.07 1.22 7.56 -51.93 -0.39 0.83 16 LS Contribution 264.14 15.07 3.98 3.98 Total: -1.00 -32.39 264.14 -7.49 -39.88 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.53 Total: -0.79 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -0.62 Total: -14.40 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.83 Total: -37.49 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.48 Total: -8.11 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.39 -7.49 -39.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084359194.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.129 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds