Wall clock time and date at job start Mon Mar 30 2020 01:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 7 12 12 C 1.42899 * 113.99629 * 180.02562 * 11 10 9 13 13 C 1.53787 * 113.61455 * 249.13819 * 12 11 10 14 14 C 1.54049 * 86.98243 * 270.83906 * 13 12 11 15 15 C 1.53005 * 113.69739 * 220.00731 * 14 13 12 16 16 N 1.46903 * 109.47113 * 272.53853 * 15 14 13 17 17 C 1.53776 * 87.08027 * 334.56788 * 14 13 12 18 18 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 20 20 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 21 21 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 22 22 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 23 23 H 1.09003 * 112.85589 * 20.33638 * 12 11 10 24 24 H 1.08997 * 113.61519 * 25.43128 * 13 12 11 25 25 H 1.08994 * 113.61518 * 156.33895 * 13 12 11 26 26 H 1.08999 * 113.61689 * 89.11448 * 14 13 12 27 27 H 1.09002 * 109.46735 * 32.53683 * 15 14 13 28 28 H 1.09001 * 109.47419 * 152.53325 * 15 14 13 29 29 H 1.00898 * 111.00215 * 56.04238 * 16 15 14 30 30 H 1.00907 * 110.99490 * 179.97438 * 16 15 14 31 31 H 1.08998 * 113.61491 * 270.88269 * 17 14 13 32 32 H 1.08998 * 113.61749 * 139.98030 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 8 5.4505 -2.6366 -0.0009 12 6 6.0316 -3.9420 -0.0014 13 6 6.7406 -4.3013 1.3152 14 6 8.0109 -3.6774 0.7067 15 6 9.2895 -4.4574 1.0194 16 7 9.8452 -3.9945 2.2980 17 6 7.4138 -4.0008 -0.6730 18 1 -0.4850 0.8401 0.0004 19 1 3.8751 -0.6805 0.8889 20 1 3.8745 -0.6801 -0.8910 21 1 3.6584 -3.1503 0.8892 22 1 3.6578 -3.1506 -0.8908 23 1 5.3434 -4.7117 -0.3508 24 1 6.3572 -3.7591 2.1796 25 1 6.8213 -5.3742 1.4890 26 1 8.1087 -2.6092 0.9006 27 1 9.0590 -5.5206 1.0870 28 1 10.0184 -4.2935 0.2257 29 1 9.1649 -4.0761 3.0387 30 1 10.6907 -4.4952 2.5272 31 1 7.6782 -4.9918 -1.0418 32 1 7.5735 -3.2163 -1.4127 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084450414.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:24 Heat of formation + Delta-G solvation = -39.462689 kcal Electronic energy + Delta-G solvation = -12542.124460 eV Core-core repulsion = 10309.919261 eV Total energy + Delta-G solvation = -2232.205199 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.42489 -36.27293 -33.76530 -32.86544 -30.25446 -26.56896 -25.61540 -24.55894 -22.00772 -20.56024 -19.31355 -16.94960 -16.28672 -15.75346 -15.19659 -14.83329 -14.76945 -14.09581 -13.39950 -13.22792 -12.88579 -12.49892 -12.26219 -11.95120 -11.18731 -11.13298 -10.83616 -10.54003 -10.14497 -10.04524 -9.81168 -9.78050 -9.25048 -8.89012 -8.87347 -8.54772 -6.07087 -4.06626 3.33470 3.40269 3.47415 4.07009 4.34764 4.45528 4.66507 4.79675 4.94458 5.10449 5.27661 5.32116 5.50350 5.65585 5.66987 5.71520 5.90335 6.11688 6.16643 6.22051 6.33724 6.46202 6.67876 6.97625 7.14658 7.25046 7.38535 7.70052 7.93912 8.47792 8.94922 9.54497 11.05819 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.061722 B = 0.006214 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.535981 B = 4504.862773 C = 4706.649650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.010 4.010 10 C 0.076 3.924 11 O -0.372 6.372 12 C 0.067 3.933 13 C -0.162 4.162 14 C -0.102 4.102 15 C 0.071 3.929 16 N -0.851 5.851 17 C -0.138 4.138 18 H 0.264 0.736 19 H 0.024 0.976 20 H 0.020 0.980 21 H 0.041 0.959 22 H 0.042 0.958 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.342 0.658 30 H 0.337 0.663 31 H 0.085 0.915 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.359 -9.469 1.718 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.047 4.047 10 C 0.000 4.000 11 O -0.291 6.291 12 C 0.008 3.992 13 C -0.200 4.200 14 C -0.120 4.120 15 C -0.060 4.060 16 N -0.380 5.380 17 C -0.176 4.176 18 H 0.074 0.926 19 H 0.042 0.958 20 H 0.038 0.962 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.154 0.846 30 H 0.149 0.851 31 H 0.104 0.896 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.370 -8.470 1.351 18.480 hybrid contribution -0.040 -0.394 0.325 0.512 sum 16.329 -8.863 1.675 18.655 Atomic orbital electron populations 1.69905 1.06299 1.27077 1.50741 1.24954 0.94742 0.99213 0.94244 0.86748 0.80480 0.83275 0.78708 1.20136 1.21289 1.18739 1.20937 0.88798 0.94753 1.51711 0.90943 1.19542 0.96576 0.91108 0.97474 1.22713 0.77411 1.00784 0.99054 1.87893 1.22081 1.24789 1.94386 1.22824 0.93876 0.86815 0.95640 1.23623 0.97180 1.00169 0.99014 1.22561 0.92176 1.01056 0.96240 1.21820 0.96400 0.95685 0.92092 1.58707 1.09820 1.64112 1.05400 1.23202 0.95375 1.01964 0.97015 0.92583 0.95752 0.96175 0.94033 0.93994 0.91474 0.90751 0.90197 0.88020 0.95714 0.91190 0.84608 0.85133 0.89613 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.52 -15.26 9.66 -34.44 -0.33 -15.60 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.24 4.41 -27.88 -0.12 -0.36 16 10 C 0.08 1.63 5.72 37.16 0.21 1.84 16 11 O -0.37 -7.29 10.27 -35.23 -0.36 -7.65 16 12 C 0.07 1.01 4.36 -25.92 -0.11 0.90 16 13 C -0.16 -2.07 7.49 -25.77 -0.19 -2.26 16 14 C -0.10 -1.25 3.84 -89.67 -0.34 -1.60 16 15 C 0.07 0.70 6.63 -3.82 -0.03 0.68 16 16 N -0.85 -8.16 9.62 -10.36 -0.10 -8.26 16 17 C -0.14 -1.71 7.47 -25.92 -0.19 -1.90 16 18 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 19 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 20 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 21 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 26 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.02 0.22 7.85 -51.93 -0.41 -0.19 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.34 3.09 8.99 -39.29 -0.35 2.74 16 30 H 0.34 2.50 9.08 -39.29 -0.36 2.14 16 31 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 266.85 15.07 4.02 4.02 Total: -1.00 -31.29 266.85 -6.79 -38.08 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.25 Total: -0.18 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -1.21 Total: -16.32 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.67 Total: -35.48 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.36 Total: -7.65 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.29 -6.79 -38.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084450414.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.381 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds