Wall clock time and date at job start Mon Mar 30 2020 01:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 7 12 12 C 1.42899 * 113.99629 * 180.02562 * 11 10 9 13 13 C 1.53787 * 113.61455 * 249.13819 * 12 11 10 14 14 C 1.54049 * 86.98243 * 270.83906 * 13 12 11 15 15 C 1.53005 * 113.69739 * 220.00731 * 14 13 12 16 16 N 1.46903 * 109.47113 * 272.53853 * 15 14 13 17 17 C 1.53776 * 87.08027 * 334.56788 * 14 13 12 18 18 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 20 20 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 21 21 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 22 22 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 23 23 H 1.09003 * 112.85589 * 20.33638 * 12 11 10 24 24 H 1.08997 * 113.61519 * 25.43128 * 13 12 11 25 25 H 1.08994 * 113.61518 * 156.33895 * 13 12 11 26 26 H 1.08999 * 113.61689 * 89.11448 * 14 13 12 27 27 H 1.09002 * 109.46735 * 32.53683 * 15 14 13 28 28 H 1.09001 * 109.47419 * 152.53325 * 15 14 13 29 29 H 1.00898 * 111.00215 * 56.04238 * 16 15 14 30 30 H 1.00907 * 110.99490 * 179.97438 * 16 15 14 31 31 H 1.08998 * 113.61491 * 270.88269 * 17 14 13 32 32 H 1.08998 * 113.61749 * 139.98030 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 8 5.4505 -2.6366 -0.0009 12 6 6.0316 -3.9420 -0.0014 13 6 6.7406 -4.3013 1.3152 14 6 8.0109 -3.6774 0.7067 15 6 9.2895 -4.4574 1.0194 16 7 9.8452 -3.9945 2.2980 17 6 7.4138 -4.0008 -0.6730 18 1 -0.4850 0.8401 0.0004 19 1 3.8751 -0.6805 0.8889 20 1 3.8745 -0.6801 -0.8910 21 1 3.6584 -3.1503 0.8892 22 1 3.6578 -3.1506 -0.8908 23 1 5.3434 -4.7117 -0.3508 24 1 6.3572 -3.7591 2.1796 25 1 6.8213 -5.3742 1.4890 26 1 8.1087 -2.6092 0.9006 27 1 9.0590 -5.5206 1.0870 28 1 10.0184 -4.2935 0.2257 29 1 9.1649 -4.0761 3.0387 30 1 10.6907 -4.4952 2.5272 31 1 7.6782 -4.9918 -1.0418 32 1 7.5735 -3.2163 -1.4127 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084450414.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:24 Heat of formation + Delta-G solvation = -62.264194 kcal Electronic energy + Delta-G solvation = -12543.113208 eV Core-core repulsion = 10309.919261 eV Total energy + Delta-G solvation = -2233.193947 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.56080 -37.65128 -35.31364 -34.37408 -32.25051 -27.61076 -26.75407 -26.33652 -23.04297 -22.49579 -20.43371 -19.02684 -17.40372 -16.88628 -16.43853 -16.31389 -16.28711 -15.63485 -14.84134 -14.40033 -14.33612 -14.02455 -13.57870 -13.20664 -13.03317 -12.68337 -12.22183 -12.07784 -11.83520 -11.63280 -11.41771 -11.38680 -10.93856 -10.82066 -10.31542 -9.57533 -8.34871 -6.40755 1.35120 1.36579 1.50112 2.33496 2.72905 3.00281 3.50910 3.68383 3.86029 3.89510 4.13225 4.33521 4.38317 4.46892 4.53818 4.71898 4.76841 4.81408 4.87524 4.91594 5.13500 5.17466 5.29921 5.38474 5.47296 5.57210 6.17788 6.28256 6.43764 6.63290 6.65179 7.24692 8.81241 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.061722 B = 0.006214 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.535981 B = 4504.862773 C = 4706.649650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.537 4.537 8 H 0.039 0.961 9 C -0.007 4.007 10 C 0.089 3.911 11 O -0.390 6.390 12 C 0.042 3.958 13 C -0.153 4.153 14 C -0.099 4.099 15 C 0.077 3.923 16 N -0.864 5.864 17 C -0.126 4.126 18 H 0.270 0.730 19 H 0.021 0.979 20 H 0.021 0.979 21 H 0.041 0.959 22 H 0.045 0.955 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.108 0.892 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.344 0.656 30 H 0.350 0.650 31 H 0.118 0.882 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.437 -9.863 1.675 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.773 3.227 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.575 4.575 8 H 0.058 0.942 9 C -0.045 4.045 10 C 0.013 3.987 11 O -0.310 6.310 12 C -0.016 4.016 13 C -0.190 4.190 14 C -0.118 4.118 15 C -0.054 4.054 16 N -0.395 5.395 17 C -0.164 4.164 18 H 0.079 0.921 19 H 0.039 0.961 20 H 0.040 0.960 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.094 0.906 24 H 0.076 0.924 25 H 0.127 0.873 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.156 0.844 30 H 0.163 0.837 31 H 0.136 0.864 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.470 -8.886 1.309 20.539 hybrid contribution -0.697 -0.366 0.346 0.860 sum 17.773 -9.252 1.655 20.105 Atomic orbital electron populations 1.70032 1.08090 1.28457 1.51857 1.25894 0.95617 1.03301 0.93686 0.85666 0.79308 0.78343 0.79421 1.18889 1.20307 1.17766 1.21211 0.90928 0.93741 1.51612 0.94221 1.19421 0.94087 0.93794 0.97158 1.22331 0.78944 0.98202 0.99212 1.87834 1.20472 1.27935 1.94724 1.23268 0.95158 0.85030 0.98131 1.23615 0.96623 1.01683 0.97105 1.22442 0.93428 0.99725 0.96165 1.21740 0.95162 0.96115 0.92389 1.58678 1.10576 1.64762 1.05450 1.23227 0.93083 1.03406 0.96669 0.92127 0.96093 0.96024 0.94040 0.93719 0.90553 0.92436 0.87350 0.90955 0.93900 0.90724 0.84375 0.83674 0.86392 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.52 13.96 21.45 0.30 -59.22 16 2 C 0.01 0.77 5.47 84.66 0.46 1.23 16 3 Si 0.95 45.54 27.47 68.60 1.88 47.43 16 4 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.25 -11.71 6.54 99.48 0.65 -11.06 16 7 C -0.54 -31.83 9.66 25.60 0.25 -31.59 16 8 H 0.04 2.53 7.99 -2.91 -0.02 2.51 16 9 C -0.01 -0.36 4.41 29.85 0.13 -0.23 16 10 C 0.09 3.82 5.72 71.98 0.41 4.23 16 11 O -0.39 -15.03 10.27 -148.98 -1.53 -16.56 16 12 C 0.04 1.20 4.36 31.12 0.14 1.33 16 13 C -0.15 -3.60 7.49 31.21 0.23 -3.36 16 14 C -0.10 -2.25 3.84 -10.18 -0.04 -2.29 16 15 C 0.08 1.30 6.63 86.30 0.57 1.88 16 16 N -0.86 -14.66 9.62 -186.70 -1.80 -16.45 16 17 C -0.13 -2.83 7.47 31.12 0.23 -2.59 16 18 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 19 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 20 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 21 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.08 2.01 7.88 -2.39 -0.02 2.00 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.11 1.94 7.91 -2.39 -0.02 1.92 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.04 0.60 7.85 -2.39 -0.02 0.58 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.34 5.56 8.99 -89.70 -0.81 4.76 16 30 H 0.35 4.34 9.08 -89.69 -0.81 3.52 16 31 H 0.12 1.90 8.10 -2.39 -0.02 1.88 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -67.23 266.85 0.67 -66.57 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -0.58 Total: 9.63 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 2.39 Total: -31.39 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -1.50 Total: -75.67 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -1.53 Total: -16.56 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.43 kcal Total: -67.23 0.67 -66.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084450414.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.302 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds