Wall clock time and date at job start Mon Mar 30 2020 01:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00003 * 2 1 4 4 H 1.48500 * 109.47213 * 270.00016 * 3 2 1 5 5 H 1.48500 * 109.47137 * 30.00210 * 3 2 1 6 6 H 1.48507 * 109.46714 * 149.99901 * 3 2 1 7 7 C 1.37879 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99999 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99852 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47061 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47284 * 179.97438 * 10 9 7 12 12 O 1.42891 * 109.47175 * 179.97438 * 11 10 9 13 13 C 1.42905 * 113.99873 * 179.97438 * 12 11 10 14 14 C 1.53786 * 113.61467 * 110.86351 * 13 12 11 15 15 C 1.53962 * 87.01719 * 89.22967 * 14 13 12 16 16 N 1.46897 * 113.66226 * 139.93465 * 15 14 13 17 17 C 1.53781 * 113.61505 * 208.47211 * 13 12 11 18 18 H 0.97004 * 120.00047 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47041 * 59.99703 * 9 7 2 20 20 H 1.09000 * 109.46860 * 299.99720 * 9 7 2 21 21 H 1.09001 * 109.47096 * 59.99592 * 10 9 7 22 22 H 1.08994 * 109.46845 * 300.00240 * 10 9 7 23 23 H 1.08999 * 109.46770 * 59.99614 * 11 10 9 24 24 H 1.09002 * 109.47149 * 300.00505 * 11 10 9 25 25 H 1.09002 * 112.84917 * 339.66862 * 13 12 11 26 26 H 1.08993 * 113.61491 * 203.75088 * 14 13 12 27 27 H 1.09000 * 113.61138 * 334.65426 * 14 13 12 28 28 H 1.09002 * 113.61454 * 270.79954 * 15 14 13 29 29 H 1.00900 * 111.00026 * 82.44380 * 16 15 14 30 30 H 1.00908 * 110.99751 * 206.39262 * 16 15 14 31 31 H 1.09001 * 113.61695 * 25.34840 * 17 13 12 32 32 H 1.08997 * 113.61223 * 156.25423 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5514 -2.6367 -0.0014 12 8 6.0277 -3.9839 -0.0021 13 6 7.4523 -4.0968 -0.0028 14 6 8.0274 -4.6462 1.3134 15 6 7.8646 -6.0509 0.7046 16 7 8.9819 -6.9564 1.0041 17 6 7.9683 -5.3799 -0.6753 18 1 -0.4850 0.8401 0.0004 19 1 3.8745 -0.6808 0.8905 20 1 3.8751 -0.6797 -0.8895 21 1 3.6584 -3.1495 -0.8920 22 1 3.6577 -3.1514 0.8878 23 1 5.9148 -2.1237 0.8890 24 1 5.9148 -2.1219 -0.8909 25 1 7.9484 -3.1911 -0.3517 26 1 9.0654 -4.3636 1.4879 27 1 7.3878 -4.4671 2.1777 28 1 6.8911 -6.5010 0.8992 29 1 8.8743 -7.3740 1.9163 30 1 9.0747 -7.6643 0.2910 31 1 7.2811 -5.7924 -1.4141 32 1 8.9902 -5.2982 -1.0453 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084450787.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:23 Heat of formation + Delta-G solvation = -63.691760 kcal Electronic energy + Delta-G solvation = -12416.662568 eV Core-core repulsion = 10183.406717 eV Total energy + Delta-G solvation = -2233.255851 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.47940 -37.65837 -35.68317 -33.73236 -32.32961 -28.95672 -26.67417 -24.66765 -24.20494 -21.94991 -20.32735 -18.97555 -17.63916 -16.89786 -16.49193 -16.35054 -16.27170 -15.89190 -14.83157 -14.74878 -14.37058 -13.63252 -13.30401 -13.09602 -12.81907 -12.58196 -12.42428 -11.86827 -11.67641 -11.66450 -11.37945 -11.37645 -11.31808 -10.77450 -10.38906 -9.68079 -8.30275 -6.35833 1.37027 1.39449 1.51525 2.36590 2.62527 3.04812 3.60036 3.64387 3.73729 3.86110 4.17565 4.19710 4.28125 4.44866 4.54904 4.73901 4.83859 4.85490 4.87909 5.00758 5.03858 5.19482 5.26514 5.44792 5.53888 5.62999 6.22529 6.26276 6.38552 6.58509 6.72309 7.28793 8.86854 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.085859 B = 0.005479 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.037190 B = 5109.408790 C = 5258.290367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.243 1.243 7 C -0.539 4.539 8 H 0.027 0.973 9 C -0.007 4.007 10 C -0.096 4.096 11 C 0.071 3.929 12 O -0.389 6.389 13 C 0.049 3.951 14 C -0.144 4.144 15 C 0.065 3.935 16 N -0.840 5.840 17 C -0.126 4.126 18 H 0.267 0.733 19 H 0.026 0.974 20 H 0.026 0.974 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.347 0.653 30 H 0.349 0.651 31 H 0.068 0.932 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.826 -8.324 0.568 21.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.577 4.577 8 H 0.046 0.954 9 C -0.045 4.045 10 C -0.133 4.133 11 C -0.005 4.005 12 O -0.309 6.309 13 C -0.009 4.009 14 C -0.183 4.183 15 C -0.047 4.047 16 N -0.371 5.371 17 C -0.163 4.163 18 H 0.076 0.924 19 H 0.044 0.956 20 H 0.044 0.956 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.105 0.895 26 H 0.124 0.876 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.086 0.914 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 20.011 -7.742 0.508 21.462 hybrid contribution -1.168 -0.019 0.106 1.173 sum 18.843 -7.761 0.614 20.388 Atomic orbital electron populations 1.70080 1.08475 1.28327 1.52460 1.26095 0.95693 1.03818 0.93851 0.85572 0.79534 0.77623 0.79402 1.18874 1.20904 1.16597 1.21477 0.92142 0.93157 1.50886 0.95414 1.19440 0.93936 0.93965 0.97115 1.21278 0.93103 0.97817 1.01149 1.22598 0.94297 0.82810 1.00774 1.87847 1.20882 1.27390 1.94766 1.23107 0.81071 0.99007 0.97731 1.23551 1.01901 0.95759 0.97056 1.22686 0.92346 0.92862 0.96806 1.58888 1.44458 1.25585 1.08136 1.23271 1.02207 0.94677 0.96187 0.92389 0.95564 0.95586 0.93190 0.93347 0.92584 0.92169 0.89453 0.87563 0.92191 0.93220 0.84028 0.83731 0.91360 0.86788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 2 C 0.00 0.12 5.47 84.66 0.46 0.58 16 3 Si 0.96 44.18 27.47 68.60 1.88 46.07 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 7 C -0.54 -32.01 9.66 25.60 0.25 -31.76 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 9 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 10 C -0.10 -3.97 5.52 30.59 0.17 -3.80 16 11 C 0.07 2.33 5.78 71.98 0.42 2.75 16 12 O -0.39 -12.37 10.27 -148.98 -1.53 -13.90 16 13 C 0.05 1.18 4.36 31.12 0.14 1.31 16 14 C -0.14 -3.11 7.73 31.18 0.24 -2.87 16 15 C 0.06 1.32 4.90 45.50 0.22 1.54 16 16 N -0.84 -13.20 9.58 -166.24 -1.59 -14.79 16 17 C -0.13 -2.53 7.70 31.12 0.24 -2.29 16 18 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 19 H 0.03 1.19 7.20 -2.39 -0.02 1.18 16 20 H 0.03 1.16 7.57 -2.39 -0.02 1.15 16 21 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 22 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 25 H 0.09 1.83 7.88 -2.39 -0.02 1.81 16 26 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.35 4.66 9.08 -89.69 -0.81 3.84 16 30 H 0.35 4.42 9.07 -89.69 -0.81 3.61 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -67.34 267.57 0.73 -66.61 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -0.59 Total: 11.29 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 2.26 Total: -34.75 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -1.29 Total: -75.31 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.53 Total: -13.90 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.07 kcal Total: -67.34 0.73 -66.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084450787.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.915 kcal (2) G-P(sol) polarization free energy of solvation -67.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds