Wall clock time and date at job start Mon Mar 30 2020 02:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.47477 * 111.00075 * 74.02853 * 12 11 10 14 14 C 1.53510 * 87.93434 * 138.70391 * 13 12 11 15 15 C 1.53002 * 114.17242 * 220.33113 * 14 13 12 16 16 O 1.42900 * 109.46649 * 268.83763 * 15 14 13 17 17 C 1.47489 * 110.99919 * 169.99763 * 12 11 10 18 18 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 20 20 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 21 21 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 22 22 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 23 23 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 24 24 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 25 25 H 1.09006 * 113.47280 * 253.46465 * 13 12 11 26 26 H 1.08995 * 113.48008 * 23.93226 * 13 12 11 27 27 H 1.09001 * 114.35108 * 87.63208 * 14 13 12 28 28 H 1.09000 * 109.47359 * 28.83256 * 15 14 13 29 29 H 1.09003 * 109.47481 * 148.83549 * 15 14 13 30 30 H 0.96705 * 113.99513 * 179.97438 * 16 15 14 31 31 H 1.09002 * 113.47515 * 336.06433 * 17 12 11 32 32 H 1.08999 * 113.47246 * 106.52749 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4346 -6.1037 0.0005 13 6 3.0651 -6.2593 1.3246 14 6 2.9145 -7.7777 1.1562 15 6 2.4912 -8.5105 2.4309 16 8 3.6542 -8.9278 3.1488 17 6 1.7472 -7.3866 0.2391 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5566 0.8902 21 1 2.8718 -3.6044 0.8905 22 1 2.8718 -3.6044 -0.8895 23 1 0.8531 -5.0451 0.8897 24 1 0.8537 -5.0446 -0.8902 25 1 4.1027 -5.9265 1.3533 26 1 2.4682 -5.8516 2.1404 27 1 3.7462 -8.2573 0.6401 28 1 1.8995 -7.8412 3.0553 29 1 1.8943 -9.3836 2.1669 30 1 3.4608 -9.3999 3.9703 31 1 0.7986 -7.2796 0.7652 32 1 1.6679 -8.0089 -0.6522 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084988760.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:05 Heat of formation + Delta-G solvation = -32.626831 kcal Electronic energy + Delta-G solvation = -12494.419759 eV Core-core repulsion = 10262.510984 eV Total energy + Delta-G solvation = -2231.908774 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.13327 -36.70725 -34.18617 -32.14185 -29.70136 -26.70560 -25.87650 -24.13975 -21.64203 -19.94872 -19.71427 -17.46638 -16.32724 -15.81649 -15.36514 -15.06660 -14.41454 -13.95510 -13.59566 -13.08800 -12.48076 -12.28513 -11.95992 -11.39182 -11.18205 -10.95336 -10.79704 -10.66156 -10.42363 -10.36909 -10.03732 -9.64951 -9.29990 -9.01237 -8.65298 -8.32778 -5.97918 -3.99762 3.32886 3.40093 3.45178 3.91601 4.20597 4.47390 4.49595 4.97260 5.20624 5.23680 5.34091 5.37999 5.45613 5.51472 5.62019 5.71392 5.82429 5.97526 6.24012 6.29055 6.52091 6.73447 6.85958 7.17854 7.36323 7.43416 7.70530 7.84826 8.02590 8.46323 9.07594 9.64264 11.13660 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.069149 B = 0.005602 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.827263 B = 4997.345090 C = 5157.741238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.104 4.104 11 C 0.021 3.979 12 N -0.472 5.472 13 C 0.008 3.992 14 C -0.119 4.119 15 C 0.086 3.914 16 O -0.572 6.572 17 C 0.004 3.996 18 H 0.259 0.741 19 H 0.016 0.984 20 H 0.013 0.987 21 H 0.046 0.954 22 H 0.055 0.945 23 H 0.036 0.964 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.377 0.623 31 H 0.067 0.933 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 -16.027 4.507 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.107 4.107 12 N -0.194 5.194 13 C -0.121 4.121 14 C -0.137 4.137 15 C 0.007 3.993 16 O -0.377 6.377 17 C -0.125 4.125 18 H 0.069 0.931 19 H 0.034 0.966 20 H 0.032 0.968 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.125 0.875 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.223 0.777 31 H 0.085 0.915 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.278 -15.469 3.371 16.168 hybrid contribution -0.583 0.736 1.162 1.494 sum 2.695 -14.733 4.533 15.649 Atomic orbital electron populations 1.69982 1.06071 1.26429 1.51214 1.25032 0.94849 0.99277 0.95381 0.86534 0.80173 0.83764 0.77546 1.19704 1.20996 1.21046 1.21298 0.93116 0.91033 1.50123 0.92615 1.19085 0.94018 0.91461 0.97068 1.21574 0.99102 0.92648 1.00827 1.22829 0.94646 0.92570 1.00648 1.68960 1.21320 1.01605 1.27528 1.23825 1.01845 0.94146 0.92244 1.22765 0.99892 0.95924 0.95155 1.22195 0.87154 0.97336 0.92574 1.86513 1.32908 1.78489 1.39788 1.23790 0.95953 0.93894 0.98911 0.93111 0.96584 0.96849 0.93552 0.92611 0.94591 0.90950 0.89773 0.91283 0.87518 0.93455 0.93454 0.77663 0.91459 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.10 -2.26 5.26 -26.73 -0.14 -2.40 16 11 C 0.02 0.38 4.82 -3.82 -0.02 0.36 16 12 N -0.47 -7.58 6.41 -244.62 -1.57 -9.15 16 13 C 0.01 0.12 6.57 -7.55 -0.05 0.07 16 14 C -0.12 -1.42 4.34 -90.09 -0.39 -1.82 16 15 C 0.09 0.84 6.96 37.16 0.26 1.10 16 16 O -0.57 -5.90 13.66 -35.23 -0.48 -6.38 16 17 C 0.00 0.05 7.29 -7.54 -0.05 -0.01 16 18 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 19 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 20 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 21 H 0.05 1.00 7.67 -51.93 -0.40 0.61 16 22 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 23 H 0.04 0.64 7.56 -51.93 -0.39 0.24 16 24 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.07 1.00 7.43 -51.93 -0.39 0.62 16 27 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.05 0.45 7.81 -51.93 -0.41 0.04 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.38 2.05 9.12 45.56 0.42 2.46 16 31 H 0.07 0.79 7.73 -51.93 -0.40 0.39 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 267.51 15.07 4.03 4.03 Total: -1.00 -32.26 267.51 -7.74 -40.00 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.49 Total: -2.70 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -0.95 Total: -16.15 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.83 Total: -35.87 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.48 Total: -6.38 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.26 -7.74 -40.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084988760.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.375 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds