Wall clock time and date at job start Mon Mar 30 2020 02:01:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86800 * 120.00005 * 2 1
4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1
6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1
7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1
9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2
11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7
12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9
13 13 C 1.47477 * 111.00075 * 74.02853 * 12 11 10
14 14 C 1.53510 * 87.93434 * 138.70391 * 13 12 11
15 15 C 1.53002 * 114.17242 * 220.33113 * 14 13 12
16 16 O 1.42900 * 109.46649 * 268.83763 * 15 14 13
17 17 C 1.47489 * 110.99919 * 169.99763 * 12 11 10
18 18 H 0.97002 * 119.99731 * 0.02562 * 1 2 3
19 19 H 1.09002 * 109.47120 * 59.99671 * 9 7 2
20 20 H 1.08998 * 109.46862 * 300.00473 * 9 7 2
21 21 H 1.09002 * 109.47153 * 59.99773 * 10 9 7
22 22 H 1.09001 * 109.46832 * 299.99964 * 10 9 7
23 23 H 1.09001 * 109.47194 * 299.99650 * 11 10 9
24 24 H 1.08992 * 109.47399 * 59.99823 * 11 10 9
25 25 H 1.09006 * 113.47280 * 253.46465 * 13 12 11
26 26 H 1.08995 * 113.48008 * 23.93226 * 13 12 11
27 27 H 1.09001 * 114.35108 * 87.63208 * 14 13 12
28 28 H 1.09000 * 109.47359 * 28.83256 * 15 14 13
29 29 H 1.09003 * 109.47481 * 148.83549 * 15 14 13
30 30 H 0.96705 * 113.99513 * 179.97438 * 16 15 14
31 31 H 1.09002 * 113.47515 * 336.06433 * 17 12 11
32 32 H 1.08999 * 113.47246 * 106.52749 * 17 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8905 2.3964 -1.2126
6 1 1.8904 2.3964 1.2124
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0005
11 6 1.4800 -4.9871 -0.0001
12 7 2.4346 -6.1037 0.0005
13 6 3.0651 -6.2593 1.3246
14 6 2.9145 -7.7777 1.1562
15 6 2.4912 -8.5105 2.4309
16 8 3.6542 -8.9278 3.1488
17 6 1.7472 -7.3866 0.2391
18 1 -0.4850 0.8401 -0.0004
19 1 0.6246 -2.5571 -0.8897
20 1 0.6240 -2.5566 0.8902
21 1 2.8718 -3.6044 0.8905
22 1 2.8718 -3.6044 -0.8895
23 1 0.8531 -5.0451 0.8897
24 1 0.8537 -5.0446 -0.8902
25 1 4.1027 -5.9265 1.3533
26 1 2.4682 -5.8516 2.1404
27 1 3.7462 -8.2573 0.6401
28 1 1.8995 -7.8412 3.0553
29 1 1.8943 -9.3836 2.1669
30 1 3.4608 -9.3999 3.9703
31 1 0.7986 -7.2796 0.7652
32 1 1.6679 -8.0089 -0.6522
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000084988760.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:01:05
Heat of formation + Delta-G solvation = -32.626831 kcal
Electronic energy + Delta-G solvation = -12494.419759 eV
Core-core repulsion = 10262.510984 eV
Total energy + Delta-G solvation = -2231.908774 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-40.13327 -36.70725 -34.18617 -32.14185 -29.70136 -26.70560 -25.87650 -24.13975
-21.64203 -19.94872 -19.71427 -17.46638 -16.32724 -15.81649 -15.36514 -15.06660
-14.41454 -13.95510 -13.59566 -13.08800 -12.48076 -12.28513 -11.95992 -11.39182
-11.18205 -10.95336 -10.79704 -10.66156 -10.42363 -10.36909 -10.03732 -9.64951
-9.29990 -9.01237 -8.65298 -8.32778 -5.97918 -3.99762 3.32886 3.40093
3.45178 3.91601 4.20597 4.47390 4.49595 4.97260 5.20624 5.23680
5.34091 5.37999 5.45613 5.51472 5.62019 5.71392 5.82429 5.97526
6.24012 6.29055 6.52091 6.73447 6.85958 7.17854 7.36323 7.43416
7.70530 7.84826 8.02590 8.46323 9.07594 9.64264 11.13660
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.069149 B = 0.005602 C = 0.005427
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 404.827263 B = 4997.345090 C = 5157.741238
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.055 3.945
3 Si 0.892 3.108
4 H -0.272 1.272
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.517 4.517
8 H 0.056 0.944
9 C 0.021 3.979
10 C -0.104 4.104
11 C 0.021 3.979
12 N -0.472 5.472
13 C 0.008 3.992
14 C -0.119 4.119
15 C 0.086 3.914
16 O -0.572 6.572
17 C 0.004 3.996
18 H 0.259 0.741
19 H 0.016 0.984
20 H 0.013 0.987
21 H 0.046 0.954
22 H 0.055 0.945
23 H 0.036 0.964
24 H 0.072 0.928
25 H 0.084 0.916
26 H 0.069 0.931
27 H 0.107 0.893
28 H 0.047 0.953
29 H 0.047 0.953
30 H 0.377 0.623
31 H 0.067 0.933
32 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.745 -16.027 4.507 16.874
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.537 5.537
2 C -0.145 4.145
3 Si 0.720 3.280
4 H -0.197 1.197
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.556 4.556
8 H 0.074 0.926
9 C -0.016 4.016
10 C -0.142 4.142
11 C -0.107 4.107
12 N -0.194 5.194
13 C -0.121 4.121
14 C -0.137 4.137
15 C 0.007 3.993
16 O -0.377 6.377
17 C -0.125 4.125
18 H 0.069 0.931
19 H 0.034 0.966
20 H 0.032 0.968
21 H 0.064 0.936
22 H 0.074 0.926
23 H 0.054 0.946
24 H 0.090 0.910
25 H 0.102 0.898
26 H 0.087 0.913
27 H 0.125 0.875
28 H 0.065 0.935
29 H 0.065 0.935
30 H 0.223 0.777
31 H 0.085 0.915
32 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 3.278 -15.469 3.371 16.168
hybrid contribution -0.583 0.736 1.162 1.494
sum 2.695 -14.733 4.533 15.649
Atomic orbital electron populations
1.69982 1.06071 1.26429 1.51214 1.25032 0.94849 0.99277 0.95381
0.86534 0.80173 0.83764 0.77546 1.19704 1.20996 1.21046 1.21298
0.93116 0.91033 1.50123 0.92615 1.19085 0.94018 0.91461 0.97068
1.21574 0.99102 0.92648 1.00827 1.22829 0.94646 0.92570 1.00648
1.68960 1.21320 1.01605 1.27528 1.23825 1.01845 0.94146 0.92244
1.22765 0.99892 0.95924 0.95155 1.22195 0.87154 0.97336 0.92574
1.86513 1.32908 1.78489 1.39788 1.23790 0.95953 0.93894 0.98911
0.93111 0.96584 0.96849 0.93552 0.92611 0.94591 0.90950 0.89773
0.91283 0.87518 0.93455 0.93454 0.77663 0.91459 0.89769
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16
2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16
3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16
4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16
8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16
9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16
10 C -0.10 -2.26 5.26 -26.73 -0.14 -2.40 16
11 C 0.02 0.38 4.82 -3.82 -0.02 0.36 16
12 N -0.47 -7.58 6.41 -244.62 -1.57 -9.15 16
13 C 0.01 0.12 6.57 -7.55 -0.05 0.07 16
14 C -0.12 -1.42 4.34 -90.09 -0.39 -1.82 16
15 C 0.09 0.84 6.96 37.16 0.26 1.10 16
16 O -0.57 -5.90 13.66 -35.23 -0.48 -6.38 16
17 C 0.00 0.05 7.29 -7.54 -0.05 -0.01 16
18 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
19 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16
20 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16
21 H 0.05 1.00 7.67 -51.93 -0.40 0.61 16
22 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16
23 H 0.04 0.64 7.56 -51.93 -0.39 0.24 16
24 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16
25 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16
26 H 0.07 1.00 7.43 -51.93 -0.39 0.62 16
27 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16
28 H 0.05 0.45 7.81 -51.93 -0.41 0.04 16
29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16
30 H 0.38 2.05 9.12 45.56 0.42 2.46 16
31 H 0.07 0.79 7.73 -51.93 -0.40 0.39 16
32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
LS Contribution 267.51 15.07 4.03 4.03
Total: -1.00 -32.26 267.51 -7.74 -40.00
By element:
Atomic # 1 Polarization: 1.79 SS G_CDS: -4.49 Total: -2.70 kcal
Atomic # 6 Polarization: -15.21 SS G_CDS: -0.95 Total: -16.15 kcal
Atomic # 7 Polarization: -35.03 SS G_CDS: -0.83 Total: -35.87 kcal
Atomic # 8 Polarization: -5.90 SS G_CDS: -0.48 Total: -6.38 kcal
Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal
Total LS contribution 4.03 Total: 4.03 kcal
Total: -32.26 -7.74 -40.00 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084988760.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.375 kcal
(2) G-P(sol) polarization free energy of solvation -32.260 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.886 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.627 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds