Wall clock time and date at job start Mon Mar 30 2020 02:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.47477 * 111.00075 * 74.02853 * 12 11 10 14 14 C 1.53510 * 87.93434 * 138.70391 * 13 12 11 15 15 C 1.53002 * 114.17242 * 220.33113 * 14 13 12 16 16 O 1.42900 * 109.46649 * 268.83763 * 15 14 13 17 17 C 1.47489 * 110.99919 * 169.99763 * 12 11 10 18 18 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 20 20 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 21 21 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 22 22 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 23 23 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 24 24 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 25 25 H 1.09006 * 113.47280 * 253.46465 * 13 12 11 26 26 H 1.08995 * 113.48008 * 23.93226 * 13 12 11 27 27 H 1.09001 * 114.35108 * 87.63208 * 14 13 12 28 28 H 1.09000 * 109.47359 * 28.83256 * 15 14 13 29 29 H 1.09003 * 109.47481 * 148.83549 * 15 14 13 30 30 H 0.96705 * 113.99513 * 179.97438 * 16 15 14 31 31 H 1.09002 * 113.47515 * 336.06433 * 17 12 11 32 32 H 1.08999 * 113.47246 * 106.52749 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4346 -6.1037 0.0005 13 6 3.0651 -6.2593 1.3246 14 6 2.9145 -7.7777 1.1562 15 6 2.4912 -8.5105 2.4309 16 8 3.6542 -8.9278 3.1488 17 6 1.7472 -7.3866 0.2391 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5566 0.8902 21 1 2.8718 -3.6044 0.8905 22 1 2.8718 -3.6044 -0.8895 23 1 0.8531 -5.0451 0.8897 24 1 0.8537 -5.0446 -0.8902 25 1 4.1027 -5.9265 1.3533 26 1 2.4682 -5.8516 2.1404 27 1 3.7462 -8.2573 0.6401 28 1 1.8995 -7.8412 3.0553 29 1 1.8943 -9.3836 2.1669 30 1 3.4608 -9.3999 3.9703 31 1 0.7986 -7.2796 0.7652 32 1 1.6679 -8.0089 -0.6522 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084988760.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:05 Heat of formation + Delta-G solvation = -58.208507 kcal Electronic energy + Delta-G solvation = -12495.529063 eV Core-core repulsion = 10262.510984 eV Total energy + Delta-G solvation = -2233.018079 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.25511 -37.52452 -36.09641 -34.05393 -31.16748 -28.29560 -26.97226 -25.74013 -23.22801 -21.68521 -20.71793 -18.51460 -18.22134 -16.87588 -16.72679 -16.34665 -16.27649 -15.23987 -14.90451 -14.41449 -14.00485 -13.71917 -13.53810 -13.18498 -12.79436 -12.62020 -12.30475 -12.02303 -11.92840 -11.70342 -11.44411 -11.34982 -11.05035 -10.80611 -10.58066 -9.87275 -8.22597 -6.33831 1.38719 1.39080 1.52948 2.39530 3.01920 3.10414 3.14711 3.55757 4.00919 4.10757 4.21732 4.29959 4.40853 4.46776 4.56368 4.64394 4.68568 4.74115 4.81973 4.89389 5.06569 5.15840 5.28953 5.39531 5.49276 5.70309 5.82153 6.06878 6.24669 6.82366 6.93935 7.35562 8.89598 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.069149 B = 0.005602 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.827263 B = 4997.345090 C = 5157.741238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.026 3.974 10 C -0.089 4.089 11 C 0.033 3.967 12 N -0.492 5.492 13 C 0.000 4.000 14 C -0.106 4.106 15 C 0.089 3.911 16 O -0.593 6.593 17 C 0.008 3.992 18 H 0.265 0.735 19 H -0.007 1.007 20 H -0.007 1.007 21 H 0.045 0.955 22 H 0.047 0.953 23 H 0.040 0.960 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.398 0.602 31 H 0.080 0.920 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.269 -16.695 4.939 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.127 4.127 11 C -0.096 4.096 12 N -0.214 5.214 13 C -0.129 4.129 14 C -0.124 4.124 15 C 0.011 3.989 16 O -0.401 6.401 17 C -0.120 4.120 18 H 0.073 0.927 19 H 0.011 0.989 20 H 0.011 0.989 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.121 0.879 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.248 0.752 31 H 0.098 0.902 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.806 -16.165 3.818 17.040 hybrid contribution -0.750 0.901 1.043 1.569 sum 3.056 -15.263 4.861 16.307 Atomic orbital electron populations 1.70100 1.07762 1.27792 1.51662 1.25984 0.95812 1.03366 0.94576 0.85376 0.78957 0.78623 0.77965 1.18820 1.20138 1.20096 1.21705 0.93436 0.92495 1.50658 0.92563 1.18976 0.94330 0.92976 0.94879 1.21321 0.97999 0.93114 1.00301 1.22577 0.94519 0.91706 1.00751 1.68932 1.21542 1.02213 1.28685 1.23905 1.01049 0.96430 0.91493 1.22660 0.99408 0.94185 0.96196 1.22145 0.87123 0.98126 0.91539 1.86451 1.33480 1.79000 1.41210 1.23856 0.96457 0.91827 0.99874 0.92668 0.98852 0.98874 0.93636 0.93403 0.94194 0.91185 0.90839 0.91359 0.87893 0.93047 0.91096 0.75243 0.90218 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -32.25 9.11 25.60 0.23 -32.02 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.09 -3.96 5.26 30.59 0.16 -3.80 16 11 C 0.03 1.19 4.82 86.30 0.42 1.61 16 12 N -0.49 -15.30 6.41 -927.84 -5.95 -21.26 16 13 C 0.00 0.01 6.57 83.58 0.55 0.55 16 14 C -0.11 -2.33 4.34 -10.45 -0.05 -2.37 16 15 C 0.09 1.51 6.96 71.98 0.50 2.01 16 16 O -0.59 -10.84 13.66 -148.98 -2.04 -12.87 16 17 C 0.01 0.19 7.29 83.57 0.61 0.80 16 18 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 19 H -0.01 -0.41 8.14 -2.39 -0.02 -0.42 16 20 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 21 H 0.04 1.99 7.67 -2.39 -0.02 1.97 16 22 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.04 1.40 7.56 -2.39 -0.02 1.38 16 24 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.07 1.92 7.43 -2.39 -0.02 1.91 16 27 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.05 0.84 7.81 -2.39 -0.02 0.82 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.40 3.32 9.12 -74.05 -0.68 2.65 16 31 H 0.08 1.66 7.73 -2.39 -0.02 1.64 16 32 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -68.68 267.51 -2.23 -70.92 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 0.41 Total: 4.51 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 3.03 Total: -31.17 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -5.67 Total: -78.64 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -2.04 Total: -12.87 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -68.68 -2.23 -70.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084988760.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.708 kcal (2) G-P(sol) polarization free energy of solvation -68.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds