Wall clock time and date at job start Mon Mar 30 2020 02:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47167 * 2 1 4 4 C 1.50704 * 109.46898 * 119.99657 * 2 1 3 5 5 H 1.07996 * 119.99898 * 119.99794 * 4 2 1 6 6 C 1.37879 * 120.00196 * 299.99878 * 4 2 1 7 7 N 1.31510 * 119.99732 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99969 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47212 * 90.00510 * 8 6 4 10 10 H 1.48499 * 109.47190 * 210.00141 * 8 6 4 11 11 H 1.48503 * 109.47539 * 330.00316 * 8 6 4 12 12 C 1.52991 * 109.47094 * 239.99696 * 2 1 3 13 13 H 1.09011 * 109.53706 * 179.90220 * 12 2 1 14 14 C 1.53123 * 109.50610 * 59.80583 * 12 2 1 15 15 C 1.53114 * 109.16198 * 182.40446 * 14 12 2 16 16 C 1.53032 * 109.28141 * 57.65126 * 15 14 12 17 17 N 1.46844 * 109.52527 * 300.82107 * 16 15 14 18 18 C 1.46846 * 111.19783 * 61.73901 * 17 16 15 19 19 H 1.09002 * 109.47377 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.47410 * 300.00159 * 1 2 3 21 21 H 1.08997 * 109.47107 * 60.00078 * 1 2 3 22 22 H 0.96702 * 114.00569 * 179.97438 * 3 2 1 23 23 H 0.97001 * 119.99999 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.52219 * 62.49616 * 14 12 2 25 25 H 1.08998 * 109.51778 * 302.31121 * 14 12 2 26 26 H 1.09000 * 109.50493 * 297.71120 * 15 14 12 27 27 H 1.09000 * 109.53426 * 177.61523 * 15 14 12 28 28 H 1.09000 * 109.46311 * 180.80335 * 16 15 14 29 29 H 1.09008 * 109.45233 * 60.83074 * 16 15 14 30 30 H 1.00904 * 111.00140 * 185.83454 * 17 16 15 31 31 H 1.09008 * 109.46456 * 58.27625 * 18 17 16 32 32 H 1.09003 * 109.46474 * 178.24130 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.6296 -0.5457 4.4125 10 1 1.3430 -0.9490 5.1121 11 1 2.4857 -2.5661 3.7121 12 6 2.0400 -0.7213 -1.2491 13 1 3.1301 -0.7204 -1.2511 14 6 1.5260 -0.0030 -2.4999 15 6 1.9907 -0.7652 -3.7439 16 6 1.4824 -2.2069 -3.6723 17 7 2.0021 -2.8508 -2.4592 18 6 1.5303 -2.1643 -1.2499 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 2.9703 1.4237 0.0004 23 1 0.7081 1.1610 3.4844 24 1 1.9221 1.0122 -2.5256 25 1 0.4367 0.0305 -2.4789 26 1 3.0799 -0.7650 -3.7851 27 1 1.5927 -0.2830 -4.6367 28 1 1.8237 -2.7563 -4.5497 29 1 0.3927 -2.2067 -3.6450 30 1 1.7593 -3.8300 -2.4371 31 1 0.4404 -2.1645 -1.2340 32 1 1.9063 -2.6827 -0.3678 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878003.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:29 Heat of formation + Delta-G solvation = -83.282756 kcal Electronic energy + Delta-G solvation = -13767.166354 eV Core-core repulsion = 11533.060974 eV Total energy + Delta-G solvation = -2234.105380 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.16997 -37.36711 -34.28023 -33.06084 -32.38440 -29.25857 -27.39565 -24.58497 -24.26415 -21.73269 -19.84023 -18.84723 -17.57687 -16.64478 -16.29362 -15.55782 -15.25272 -14.82716 -14.75180 -13.98951 -13.96702 -13.47021 -13.22581 -12.89486 -12.87990 -12.62986 -12.29692 -12.05663 -11.86920 -11.64077 -11.34842 -11.21258 -10.58971 -10.50373 -9.90349 -9.29215 -7.99164 -6.25539 1.40632 1.42800 1.51588 2.43239 3.18727 3.41071 3.99143 4.10505 4.12731 4.23731 4.46626 4.64388 4.69149 4.77212 4.85952 4.99273 5.05629 5.07160 5.14158 5.21732 5.33443 5.46404 5.56113 5.63008 5.81055 6.14017 6.16630 6.31596 6.62123 6.82533 7.42769 7.66378 8.98411 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049020 B = 0.011687 C = 0.010361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.057603 B = 2395.151518 C = 2701.917656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.245 3.755 3 O -0.579 6.579 4 C -0.566 4.566 5 H 0.054 0.946 6 C 0.032 3.968 7 N -0.889 5.889 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.268 1.268 12 C -0.090 4.090 13 H 0.048 0.952 14 C -0.111 4.111 15 C -0.113 4.113 16 C 0.058 3.942 17 N -0.697 5.697 18 C 0.081 3.919 19 H 0.044 0.956 20 H 0.054 0.946 21 H 0.027 0.973 22 H 0.354 0.646 23 H 0.256 0.744 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.026 0.974 30 H 0.348 0.652 31 H 0.022 0.978 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 -5.400 -9.492 10.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.206 3.794 3 O -0.383 6.383 4 C -0.604 4.604 5 H 0.072 0.928 6 C -0.170 4.170 7 N -0.527 5.527 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.109 4.109 13 H 0.067 0.933 14 C -0.148 4.148 15 C -0.151 4.151 16 C -0.071 4.071 17 N -0.329 5.329 18 C -0.049 4.049 19 H 0.063 0.937 20 H 0.073 0.927 21 H 0.046 0.954 22 H 0.198 0.802 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.044 0.956 30 H 0.166 0.834 31 H 0.040 0.960 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.663 -4.825 -9.395 10.582 hybrid contribution -0.120 -0.612 1.273 1.418 sum 0.543 -5.436 -8.121 9.788 Atomic orbital electron populations 1.21590 0.96877 0.99110 0.99919 1.18749 0.91169 0.79281 0.90212 1.86448 1.24313 1.30321 1.97171 1.21968 1.32880 1.13258 0.92279 0.92809 1.25711 0.94552 0.95101 1.01626 1.70152 1.36102 1.23169 1.23268 0.85782 0.78038 0.79349 0.79702 1.20407 1.21209 1.19252 1.21616 0.98941 0.94716 0.95652 0.93302 1.21569 0.99849 0.98798 0.94597 1.21597 1.01151 0.94947 0.97362 1.21977 0.96648 0.95560 0.92931 1.60287 1.63969 1.06612 1.02008 1.21750 0.96330 0.94650 0.92122 0.93698 0.92742 0.95409 0.80186 0.93452 0.92827 0.93226 0.91942 0.90072 0.88899 0.95591 0.83369 0.95982 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 7.91 71.98 0.57 -5.23 16 2 C 0.25 12.06 0.45 -11.54 -0.01 12.06 16 3 O -0.58 -29.88 11.76 -148.98 -1.75 -31.63 16 4 C -0.57 -30.29 7.49 25.60 0.19 -30.10 16 5 H 0.05 2.85 6.71 -2.91 -0.02 2.83 16 6 C 0.03 1.77 5.24 84.66 0.44 2.21 16 7 N -0.89 -51.66 10.87 21.45 0.23 -51.43 16 8 Si 0.95 43.29 29.54 68.60 2.03 45.31 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 C -0.09 -3.69 1.86 -10.74 -0.02 -3.71 16 13 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 14 C -0.11 -3.94 4.81 30.67 0.15 -3.79 16 15 C -0.11 -3.16 6.09 30.64 0.19 -2.97 16 16 C 0.06 1.51 6.55 86.32 0.57 2.07 16 17 N -0.70 -21.02 6.85 -514.01 -3.52 -24.54 16 18 C 0.08 3.02 5.24 86.33 0.45 3.48 16 19 H 0.04 2.08 6.41 -2.39 -0.02 2.07 16 20 H 0.05 3.04 6.07 -2.38 -0.01 3.03 16 21 H 0.03 1.25 6.38 -2.39 -0.02 1.24 16 22 H 0.35 16.49 9.04 -74.06 -0.67 15.83 16 23 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 24 H 0.05 1.98 7.77 -2.39 -0.02 1.96 16 25 H 0.05 1.82 6.31 -2.39 -0.02 1.81 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.35 8.79 8.90 -89.69 -0.80 7.99 16 31 H 0.02 0.85 6.39 -2.38 -0.02 0.83 16 32 H 0.06 2.58 6.65 -2.39 -0.02 2.57 16 Total: -1.00 -60.85 245.63 -0.82 -61.67 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -0.34 Total: 26.60 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 2.53 Total: -25.99 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -3.29 Total: -75.97 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -1.75 Total: -31.63 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -60.85 -0.82 -61.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878003.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.609 kcal (2) G-P(sol) polarization free energy of solvation -60.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds