Wall clock time and date at job start Mon Mar 30 2020 02:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47258 * 2 1 4 4 C 1.50700 * 109.47552 * 239.99729 * 2 1 3 5 5 H 1.07998 * 120.00008 * 240.00363 * 4 2 1 6 6 C 1.37880 * 119.99795 * 60.00149 * 4 2 1 7 7 N 1.31512 * 119.99941 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99777 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47076 * 90.00092 * 8 6 4 10 10 H 1.48505 * 109.46825 * 210.00265 * 8 6 4 11 11 H 1.48501 * 109.47183 * 330.00000 * 8 6 4 12 12 C 1.53006 * 109.47055 * 119.99662 * 2 1 3 13 13 H 1.09007 * 109.49622 * 59.92006 * 12 2 1 14 14 C 1.53203 * 109.49217 * 299.82847 * 12 2 1 15 15 C 1.53123 * 109.11533 * 182.41941 * 14 12 2 16 16 C 1.53039 * 109.31189 * 57.63615 * 15 14 12 17 17 N 1.46856 * 109.51787 * 300.79882 * 16 15 14 18 18 C 1.46846 * 111.19871 * 61.74404 * 17 16 15 19 19 H 1.09000 * 109.47617 * 300.00479 * 1 2 3 20 20 H 1.09001 * 109.46664 * 60.00048 * 1 2 3 21 21 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 22 22 H 0.96701 * 114.00459 * 179.97438 * 3 2 1 23 23 H 0.97000 * 119.99997 * 180.02562 * 7 6 4 24 24 H 1.08994 * 109.57907 * 62.50732 * 14 12 2 25 25 H 1.08997 * 109.51203 * 302.28996 * 14 12 2 26 26 H 1.09002 * 109.50371 * 297.67165 * 15 14 12 27 27 H 1.09003 * 109.50070 * 177.59325 * 15 14 12 28 28 H 1.09000 * 109.46148 * 60.81334 * 16 15 14 29 29 H 1.09002 * 109.46208 * 180.79044 * 16 15 14 30 30 H 1.00903 * 110.99558 * 185.83726 * 17 16 15 31 31 H 1.09004 * 109.46012 * 58.27074 * 18 17 16 32 32 H 1.08994 * 109.46057 * 178.23653 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3216 -1.1204 -4.0078 9 1 1.3430 -2.1617 -4.4117 10 1 2.4869 -0.1414 -5.1121 11 1 3.6295 -1.7584 -3.7119 12 6 2.0400 -0.7212 1.2493 13 1 1.6757 -1.7486 1.2505 14 6 1.5331 0.0032 2.5005 15 6 2.0976 -0.6893 3.7441 16 6 3.6263 -0.6906 3.6727 17 7 4.0602 -1.3954 2.4595 18 6 3.5703 -0.7217 1.2502 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 2.9703 1.4237 0.0004 23 1 0.7091 1.1613 -3.4844 24 1 0.4440 -0.0318 2.5268 25 1 1.8647 1.0413 2.4796 26 1 1.7342 -1.7161 3.7853 27 1 1.7754 -0.1532 4.6369 28 1 3.9894 0.3368 3.6454 29 1 4.0304 -1.1955 4.5501 30 1 5.0643 -1.4928 2.4376 31 1 3.9338 0.3058 1.2343 32 1 3.9338 -1.2490 0.3683 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878007.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:31 Heat of formation + Delta-G solvation = -62.394533 kcal Electronic energy + Delta-G solvation = -13770.263581 eV Core-core repulsion = 11537.063983 eV Total energy + Delta-G solvation = -2233.199599 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.58844 -35.60192 -32.17078 -31.63093 -30.49100 -27.96070 -25.39558 -23.11686 -22.33967 -19.96067 -18.51275 -16.89378 -16.09582 -14.63370 -14.54702 -14.22643 -13.50962 -13.21615 -13.15334 -12.57368 -12.17579 -11.97912 -11.34390 -10.96145 -10.88118 -10.66461 -10.63303 -10.32166 -10.12922 -10.04663 -9.82233 -9.70844 -8.68533 -8.44397 -7.99913 -7.95810 -5.91433 -4.11474 3.29737 3.37162 3.39541 4.42112 4.66117 5.29815 5.33700 5.41041 5.56507 5.81053 5.92805 6.08764 6.09891 6.14218 6.31183 6.47564 6.57449 6.58472 6.80571 6.95869 7.06808 7.15902 7.19821 7.51430 7.68322 7.78794 7.86439 8.11474 8.36310 8.89355 9.43818 9.66051 11.07551 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049187 B = 0.011704 C = 0.010353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.118599 B = 2391.731801 C = 2703.768208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.254 3.746 3 O -0.562 6.562 4 C -0.558 4.558 5 H 0.057 0.943 6 C 0.080 3.920 7 N -0.858 5.858 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.099 4.099 13 H 0.066 0.934 14 C -0.114 4.114 15 C -0.118 4.118 16 C 0.060 3.940 17 N -0.694 5.694 18 C 0.068 3.932 19 H 0.016 0.984 20 H 0.086 0.914 21 H 0.036 0.964 22 H 0.343 0.657 23 H 0.258 0.742 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.023 0.977 29 H 0.062 0.938 30 H 0.332 0.668 31 H 0.023 0.977 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.734 -1.943 8.316 9.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.215 3.785 3 O -0.365 6.365 4 C -0.596 4.596 5 H 0.075 0.925 6 C -0.125 4.125 7 N -0.494 5.494 8 Si 0.712 3.288 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.118 4.118 13 H 0.085 0.915 14 C -0.152 4.152 15 C -0.156 4.156 16 C -0.069 4.069 17 N -0.324 5.324 18 C -0.060 4.060 19 H 0.035 0.965 20 H 0.105 0.895 21 H 0.055 0.945 22 H 0.187 0.813 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.149 0.851 31 H 0.041 0.959 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.460 -2.133 8.205 8.828 hybrid contribution 1.518 0.097 -0.937 1.786 sum 3.978 -2.035 7.269 8.533 Atomic orbital electron populations 1.21630 0.96271 0.99128 1.01095 1.18665 0.91362 0.79469 0.89025 1.86503 1.23264 1.29705 1.97034 1.21656 1.33454 1.13314 0.91162 0.92507 1.25005 0.94321 0.94399 0.98817 1.70008 1.34907 1.21657 1.22865 0.86743 0.79374 0.79528 0.83132 1.20666 1.21303 1.19930 1.21840 0.93605 1.00125 0.96239 0.91525 1.21636 1.00076 0.99382 0.94056 1.21619 0.94698 1.01063 0.98171 1.21863 0.96485 0.95803 0.92778 1.60366 1.15971 1.53537 1.02523 1.21979 0.96742 0.95870 0.91415 0.96464 0.89483 0.94496 0.81347 0.93222 0.92228 0.92245 0.91822 0.92697 0.95837 0.91946 0.85118 0.95888 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 8.27 37.16 0.31 -2.76 16 2 C 0.25 6.23 0.42 -91.77 -0.04 6.19 16 3 O -0.56 -14.24 11.61 -35.23 -0.41 -14.65 16 4 C -0.56 -14.89 7.49 -34.44 -0.26 -15.14 16 5 H 0.06 1.51 6.71 -52.49 -0.35 1.15 16 6 C 0.08 2.18 5.24 -17.82 -0.09 2.09 16 7 N -0.86 -24.57 10.87 55.43 0.60 -23.97 16 8 Si 0.88 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 12 C -0.10 -2.06 1.73 -90.50 -0.16 -2.21 16 13 H 0.07 1.47 8.14 -51.92 -0.42 1.05 16 14 C -0.11 -2.11 4.75 -26.56 -0.13 -2.24 16 15 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 16 C 0.06 0.88 6.55 -3.83 -0.03 0.86 16 17 N -0.69 -11.20 6.85 -113.81 -0.78 -11.98 16 18 C 0.07 1.29 5.28 -3.84 -0.02 1.27 16 19 H 0.02 0.38 6.49 -51.93 -0.34 0.04 16 20 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 21 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.34 7.91 7.31 45.56 0.33 8.24 16 23 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.06 1.12 6.58 -51.93 -0.34 0.77 16 25 H 0.06 1.15 7.62 -51.93 -0.40 0.75 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.33 4.59 8.90 -39.29 -0.35 4.24 16 31 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 32 H 0.08 1.68 6.65 -51.93 -0.35 1.33 16 LS Contribution 246.25 15.07 3.71 3.71 Total: -1.00 -28.81 246.25 -6.59 -35.41 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -4.12 Total: 9.40 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -0.57 Total: -13.93 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.18 Total: -35.94 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.41 Total: -14.65 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.81 -6.59 -35.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878007.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.988 kcal (2) G-P(sol) polarization free energy of solvation -28.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds