Wall clock time and date at job start Mon Mar 30 2020 02:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42901 * 109.47034 * 2 1 4 4 C 1.50705 * 109.47275 * 120.00246 * 2 1 3 5 5 H 1.07997 * 119.99508 * 120.00343 * 4 2 1 6 6 C 1.37872 * 119.99802 * 300.00356 * 4 2 1 7 7 N 1.31515 * 120.00267 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99988 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46750 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47026 * 119.99885 * 8 6 4 11 11 H 1.48495 * 109.47135 * 239.99816 * 8 6 4 12 12 C 1.53001 * 109.47345 * 240.00250 * 2 1 3 13 13 H 1.08996 * 109.54106 * 299.90385 * 12 2 1 14 14 C 1.53120 * 109.50234 * 60.00115 * 12 2 1 15 15 C 1.53119 * 109.16202 * 177.59979 * 14 12 2 16 16 C 1.53044 * 109.27589 * 302.34077 * 15 14 12 17 17 N 1.46847 * 109.51335 * 59.18419 * 16 15 14 18 18 C 1.46847 * 111.20163 * 298.24410 * 17 16 15 19 19 H 1.09007 * 109.47246 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47472 * 299.99252 * 1 2 3 21 21 H 1.09001 * 109.47270 * 59.99937 * 1 2 3 22 22 H 0.96703 * 113.99698 * 179.97438 * 3 2 1 23 23 H 0.96999 * 120.00046 * 180.02562 * 7 6 4 24 24 H 1.08993 * 109.52850 * 57.69063 * 14 12 2 25 25 H 1.09003 * 109.52252 * 297.50032 * 14 12 2 26 26 H 1.09000 * 109.50507 * 182.40742 * 15 14 12 27 27 H 1.08996 * 109.50916 * 62.28058 * 15 14 12 28 28 H 1.09002 * 109.46396 * 179.19729 * 16 15 14 29 29 H 1.08994 * 109.46485 * 299.17654 * 16 15 14 30 30 H 1.00902 * 110.99979 * 62.35429 * 17 16 15 31 31 H 1.09005 * 109.46836 * 301.74653 * 18 17 16 32 32 H 1.08995 * 109.45748 * 181.76188 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.1454 -2.2879 3.6036 10 1 3.1464 -0.1876 4.8165 11 1 1.1660 -1.5869 4.8160 12 6 2.0400 -0.7212 -1.2493 13 1 1.6787 -1.7495 -1.2496 14 6 1.5300 0.0001 -2.4999 15 6 2.0936 -0.6918 -3.7442 16 6 3.6225 -0.6888 -3.6751 17 7 4.0601 -1.3910 -2.4619 18 6 3.5704 -0.7173 -1.2525 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 2.9702 1.4236 0.0004 23 1 0.7094 1.1616 3.4845 24 1 1.8586 1.0392 -2.4807 25 1 0.4409 -0.0380 -2.5238 26 1 1.7687 -0.1571 -4.6366 27 1 1.7332 -1.7197 -3.7837 28 1 4.0267 -1.1934 -4.5526 29 1 3.9828 0.3395 -3.6493 30 1 3.7713 -2.3577 -2.4796 31 1 3.9309 0.3113 -1.2383 32 1 3.9367 -1.2428 -0.3706 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878011.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:33 Heat of formation + Delta-G solvation = -64.801374 kcal Electronic energy + Delta-G solvation = -13788.355072 eV Core-core repulsion = 11555.051105 eV Total energy + Delta-G solvation = -2233.303967 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.78804 -35.66668 -32.19413 -31.39757 -30.54071 -27.96526 -25.40496 -23.07826 -22.30622 -20.35468 -18.77758 -16.85598 -15.56940 -14.78564 -14.60010 -14.35262 -14.16706 -13.31555 -12.73353 -12.27159 -12.08268 -11.76029 -11.31550 -11.00233 -10.97914 -10.72081 -10.67525 -10.56788 -10.35785 -10.07826 -9.99259 -9.78892 -8.99880 -8.49283 -8.01957 -7.71608 -5.94130 -4.14489 3.27232 3.36254 3.39264 4.40046 4.77347 5.21551 5.27732 5.42056 5.49115 5.77954 5.89349 5.96096 6.09084 6.10735 6.22684 6.40232 6.54647 6.58976 6.72299 6.90551 7.01717 7.04645 7.12686 7.48955 7.63858 7.78927 7.83226 8.07140 8.32648 8.86203 9.41899 9.63554 11.04889 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049525 B = 0.011702 C = 0.010376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.240367 B = 2392.226175 C = 2697.806235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.258 3.742 3 O -0.561 6.561 4 C -0.558 4.558 5 H 0.056 0.944 6 C 0.080 3.920 7 N -0.857 5.857 8 Si 0.884 3.116 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 C -0.138 4.138 13 H 0.057 0.943 14 C -0.112 4.112 15 C -0.158 4.158 16 C 0.058 3.942 17 N -0.691 5.691 18 C 0.066 3.934 19 H 0.034 0.966 20 H 0.087 0.913 21 H 0.016 0.984 22 H 0.344 0.656 23 H 0.257 0.743 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.334 0.666 31 H 0.066 0.934 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.512 -2.763 -8.313 9.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.218 3.782 3 O -0.365 6.365 4 C -0.596 4.596 5 H 0.075 0.925 6 C -0.125 4.125 7 N -0.494 5.494 8 Si 0.712 3.288 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.158 4.158 13 H 0.076 0.924 14 C -0.149 4.149 15 C -0.197 4.197 16 C -0.072 4.072 17 N -0.318 5.318 18 C -0.063 4.063 19 H 0.053 0.947 20 H 0.106 0.894 21 H 0.035 0.965 22 H 0.189 0.811 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.150 0.850 31 H 0.084 0.916 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.406 -2.199 -8.171 8.797 hybrid contribution -0.190 -0.922 0.882 1.290 sum 2.216 -3.120 -7.289 8.232 Atomic orbital electron populations 1.21639 0.96498 0.98967 1.01097 1.18582 0.91219 0.79559 0.88803 1.86502 1.23439 1.29528 1.97009 1.21664 1.33422 1.13358 0.91164 0.92549 1.25001 0.94261 0.94411 0.98851 1.70016 1.34859 1.21672 1.22814 0.86686 0.78741 0.79865 0.83506 1.19768 1.20980 1.21066 1.22445 0.96597 0.99758 0.97048 0.92437 1.21598 0.99991 0.99806 0.93530 1.22302 0.97862 1.00591 0.98930 1.21965 0.92839 0.99520 0.92861 1.60800 1.62644 1.05936 1.02467 1.22054 0.93282 0.99346 0.91641 0.94690 0.89447 0.96541 0.81141 0.93239 0.91763 0.92461 0.92530 0.92765 0.91857 0.91357 0.85006 0.91601 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 8.27 37.15 0.31 -2.75 16 2 C 0.26 6.22 0.42 -91.77 -0.04 6.18 16 3 O -0.56 -14.08 11.62 -35.23 -0.41 -14.49 16 4 C -0.56 -14.70 7.50 -34.44 -0.26 -14.96 16 5 H 0.06 1.47 6.72 -52.49 -0.35 1.12 16 6 C 0.08 2.17 5.24 -17.82 -0.09 2.08 16 7 N -0.86 -24.42 10.87 55.43 0.60 -23.82 16 8 Si 0.88 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C -0.14 -2.76 1.71 -90.54 -0.16 -2.91 16 13 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.11 -2.01 4.74 -26.61 -0.13 -2.13 16 15 C -0.16 -2.31 6.08 -26.65 -0.16 -2.47 16 16 C 0.06 0.83 6.55 -3.83 -0.03 0.80 16 17 N -0.69 -10.98 6.87 -113.81 -0.78 -11.77 16 18 C 0.07 1.21 5.28 -3.83 -0.02 1.19 16 19 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 20 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 21 H 0.02 0.36 6.49 -51.93 -0.34 0.02 16 22 H 0.34 7.85 7.30 45.56 0.33 8.18 16 23 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.06 1.22 7.62 -51.93 -0.40 0.82 16 25 H 0.06 1.06 6.58 -51.93 -0.34 0.72 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.33 4.97 8.86 -39.29 -0.35 4.63 16 31 H 0.07 1.24 6.73 -51.93 -0.35 0.89 16 32 H 0.08 1.67 6.66 -51.93 -0.35 1.32 16 LS Contribution 246.21 15.07 3.71 3.71 Total: -1.00 -28.26 246.21 -6.59 -34.85 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -4.12 Total: 10.59 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -0.57 Total: -14.97 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.18 Total: -35.59 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.41 Total: -14.49 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.26 -6.59 -34.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878011.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.951 kcal (2) G-P(sol) polarization free energy of solvation -28.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds